Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9FEE	50339	2024-09-24	2024-05-19	3.03	3.26	3.12	3.3	0.004	0.58	0.0	0.05	15.80	0.00	2.225	4.99	0.20	7.5	92.5	0.0	-1.40	0.76	0.87	2.79	3.3	0.003	0.61	0.0	0.05	16.17	0.00	2.558	4.46	3.22	7.2	92.8	0.0	0.06	0.91	0.75	0.86	2.61	9112	1236	4	0	0	0	0	logfile
✔	9FEF	50340	2024-09-25	2024-05-19	2.98	3.19	3.00	3.2	0.008	0.83	1.0	0.05	16.73	0.01	2.173	6.86	0.58	5.7	94.0	0.3	0.09	0.74	0.86	2.49	3.2	0.003	0.64	0.0	0.04	16.75	0.00	2.565	5.01	2.65	6.1	93.9	0.0	0.61	0.93	0.65	0.86	2.44	11192	1502	5	0	0	0	0	logfile
✔	8ZL9	38897	2024-09-24	2024-05-17	4.36	4.49	4.31	4.4	0.005	1.01	1.0	0.06	14.25	0.01	2.243	9.31	0.14	7.6	92.0	0.4	-2.34	0.56	0.51	—	4.4	0.003	0.70	0.0	0.05	14.30	0.01	2.400	16.62	0.00	8.0	91.9	0.1	-1.94	1.26	0.57	0.52	—	6644	838	5	0	0	0	0	logfile
✔	9FCJ	50317	2024-09-23	2024-05-15	2.7	2.89	2.64	2.9	0.003	0.55	0.0	0.04	16.44	0.00	2.213	4.76	0.56	1.6	98.4	0.0	0.06	0.59	0.86	3.47	2.9	0.003	0.58	0.0	0.04	17.25	0.00	2.569	4.60	1.68	2.4	97.6	0.0	1.37	0.46	0.52	0.85	2.92	3174	389	5	0	2	29	0	logfile
✔	8ZJE	60142	2024-09-24	2024-05-14	3.07	3.62	3.23	3.6	0.005	0.71	0.0	0.05	14.59	0.01	2.202	5.20	0.33	3.9	96.1	0.0	1.20	0.57	0.80	3.04	3.6	0.002	0.57	0.0	0.04	15.77	0.00	2.494	5.32	2.74	2.9	97.1	0.0	1.19	0.47	0.54	0.77	2.19	8743	1135	7	0	3	0	0	logfile
✔	8ZJF	60143	2024-09-25	2024-05-14	2.7	2.89	2.81	2.9	0.003	0.65	0.0	0.04	16.73	0.00	2.127	9.93	2.50	7.2	92.8	0.0	-1.43	0.59	0.69	1.29	2.9	0.004	0.71	0.0	0.05	16.75	0.00	2.082	7.19	3.17	7.1	92.9	0.0	-1.22	1.68	0.70	0.82	2.37	10917	1419	4	0	6	0	0	logfile
✔	8ZJD	60141	2024-09-24	2024-05-14	3.06	3.48	3.18	3.4	0.004	0.67	0.0	0.05	14.50	0.00	2.200	6.08	0.54	3.3	96.7	0.0	0.74	0.63	0.83	2.57	3.4	0.003	0.63	0.0	0.04	15.69	0.00	2.425	6.14	2.27	3.6	96.4	0.0	1.02	0.85	0.60	0.81	2.21	8820	1144	6	0	0	0	0	logfile
✔	9BRZ	44846	2024-09-30	2024-05-12	3.8	4.20	3.95	4.1	0.006	0.92	0.0	0.04	16.83	0.01	2.117	5.44	3.59	4.7	95.3	0.0	-0.20	0.61	0.74	1.07	4.1	0.004	0.80	0.0	0.04	17.50	0.00	2.330	13.27	6.84	4.7	95.3	0.0	0.85	0.63	0.64	0.77	0.92	25204	3277	22	0	12	0	0	logfile
✔	9BRY	44845	2024-09-29	2024-05-12	3.6	3.97	3.81	4.0	0.005	0.88	0.0	0.04	16.14	0.01	2.423	5.08	2.88	4.2	95.8	0.0	-0.33	0.59	0.66	0.71	4.0	0.004	0.78	0.0	0.04	17.08	0.00	2.503	12.44	5.11	4.9	95.1	0.0	0.37	4.47	0.59	0.67	0.65	23530	3066	20	0	12	0	0	logfile
✔	9BRA	44839	2024-09-27	2024-05-11	4.3	4.67	4.38	4.3	0.005	0.81	1.0	0.05	13.34	0.01	2.297	4.23	0.10	5.2	94.8	0.0	-0.52	0.70	0.71	—	4.3	0.004	0.73	0.0	0.04	13.79	0.00	2.345	15.74	0.00	5.1	94.9	0.0	0.38	1.26	0.73	0.81	—	66852	8554	33	0	0	0	0	logfile
✔	8ZHM	60108	2024-09-25	2024-05-11	3.39	3.86	3.40	3.4	0.003	0.57	0.0	0.05	14.34	0.00	2.181	6.31	0.80	3.7	96.3	0.0	-1.04	0.81	0.75	1.35	3.5	0.005	0.66	0.0	0.04	15.05	0.00	2.288	10.28	2.40	5.1	94.8	0.1	-0.87	0.74	0.83	0.82	1.57	45273	5829	30	0	57	0	0	logfile
✔	9BRR	44841	2024-09-27	2024-05-11	4.5	3.78	4.55	4.0	0.005	0.84	3.0	0.05	12.84	0.01	2.279	3.84	0.42	5.0	94.7	0.4	0.03	0.48	0.67	—	3.9	0.004	0.74	0.0	0.04	13.72	0.00	2.220	12.39	0.04	5.4	94.5	0.1	0.27	1.32	0.49	0.68	—	65594	8393	32	0	0	0	0	logfile
✔	8ZHN	60109	2024-09-24	2024-05-11	4.12	4.26	4.04	3.8	0.003	0.65	0.0	0.05	12.78	0.01	2.211	6.61	0.66	4.0	96.0	0.0	-1.31	0.71	0.65	—	3.9	0.003	0.67	0.0	0.04	12.56	0.00	2.414	12.07	0.02	5.9	94.1	0.0	-0.99	1.67	0.75	0.77	—	45273	5829	30	0	57	0	0	logfile
✔	9BRS	44842	2024-09-27	2024-05-11	4.4	3.80	4.47	4.0	0.005	0.81	1.0	0.05	12.95	0.01	2.234	3.89	0.09	5.9	94.0	0.1	-0.74	0.47	0.56	—	4.0	0.004	0.72	0.0	0.04	13.67	0.00	2.089	13.41	0.01	5.0	94.9	0.0	0.01	0.68	0.51	0.68	—	65548	8388	32	0	0	0	0	logfile
✔	9BRU	44844	2024-09-27	2024-05-11	4.4	3.70	4.47	4.1	0.004	0.77	0.0	0.04	12.90	0.01	2.222	2.88	0.04	5.2	94.7	0.1	-0.37	0.43	0.53	—	4.1	0.003	0.66	0.0	0.04	13.73	0.00	2.341	10.44	0.06	4.5	95.5	0.0	0.37	0.66	0.48	0.63	—	65548	8388	32	0	0	0	0	logfile
✔	9BRQ	44840	2024-09-27	2024-05-11	4.3	4.97	4.53	4.4	0.004	0.83	0.0	0.05	13.74	0.01	2.339	3.94	0.15	5.5	94.4	0.1	-0.58	0.72	0.77	—	4.4	0.003	0.71	0.0	0.04	13.94	0.00	2.311	14.49	0.00	5.0	94.9	0.1	0.30	0.58	0.73	0.83	—	67167	8590	33	0	0	0	0	logfile
✔	8ZHo	60110	2024-09-26	2024-05-11	3.54	3.81	3.50	3.8	0.003	0.54	0.0	0.04	15.24	0.00	2.273	4.14	0.62	3.8	96.2	0.0	-0.09	0.68	0.66	1.28	3.7	0.003	0.61	0.0	0.04	15.76	0.00	2.429	7.83	3.28	4.9	95.1	0.0	-0.07	1.13	0.68	0.64	1.83	11423	1498	6	0	1	0	0	logfile
✔	9BRT	44843	2024-09-27	2024-05-11	4.3	4.74	4.42	4.4	0.004	0.73	0.0	0.04	12.08	0.01	2.370	2.43	0.01	4.9	95.1	0.0	-0.02	0.71	0.73	—	4.4	0.003	0.63	0.0	0.04	13.03	0.00	2.347	10.94	0.00	4.2	95.8	0.0	1.03	1.21	0.73	0.81	—	66930	8563	33	0	0	0	0	logfile
✔	9FAA	50270	2024-09-24	2024-05-10	3.6	3.34	3.60	3.9	0.010	1.10	0.0	0.05	11.73	0.01	2.020	10.96	0.00	1.7	98.3	0.0	-4.21	0.52	0.75	3.32	3.9	0.003	0.66	0.0	0.05	13.28	0.00	2.471	6.73	1.84	6.2	93.8	0.0	-4.00	1.11	0.52	0.75	2.81	8695	590	10	0	5	0	4235	logfile
✔	9FAB	50271	2024-09-24	2024-05-10	3.9	3.54	3.80	3.6	0.010	1.57	0.0	0.07	11.24	0.01	2.042	7.97	0.00	1.7	98.3	0.0	-4.50	0.44	0.68	2.55	3.7	0.003	0.68	0.0	0.05	14.74	0.00	2.507	6.81	2.68	9.4	90.6	0.0	-5.27	1.34	0.45	0.70	2.06	8595	585	10	0	5	0	4190	logfile

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