Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9FAA	50270	2024-09-24	2024-05-10	3.6	3.34	3.60	3.9	0.010	1.10	0.0	0.05	11.73	0.01	2.020	10.96	0.00	1.7	98.3	0.0	-4.21	0.52	0.75	3.32	3.9	0.003	0.66	0.0	0.05	13.28	0.00	2.471	6.73	1.84	6.2	93.8	0.0	-4.00	1.11	0.52	0.75	2.81	8695	590	10	0	5	0	4235	logfile
✔	9BQV	44825	2024-09-28	2024-05-10	3.2	3.93	3.27	3.7	0.021	1.35	2.0	0.07	14.53	0.01	2.156	7.50	0.00	5.9	93.9	0.2	-2.27	0.86	0.82	2.67	3.7	0.003	0.56	0.0	0.04	15.77	0.00	2.521	5.43	1.31	2.5	97.3	0.2	1.78	1.19	0.88	0.86	2.05	18697	2316	2	0	0	0	0	logfile
✔	9FAC	50272	2024-09-24	2024-05-10	3.9	3.38	3.90	4.3	0.007	1.17	0.0	0.07	11.94	0.01	2.226	11.78	0.00	3.8	96.2	0.0	-4.35	0.47	0.63	2.06	3.8	0.005	1.18	1.0	0.05	15.32	0.01	2.431	14.20	2.68	9.2	90.8	0.0	-4.40	1.96	0.48	0.66	1.70	8595	585	10	0	5	0	4190	logfile
✔	8ZHG	60102	2024-09-23	2024-05-10	3.51	3.69	3.44	3.7	0.003	0.66	0.0	0.04	17.55	0.01	2.273	4.79	1.11	4.3	95.7	0.0	-1.47	0.61	0.72	1.21	3.6	0.002	0.60	0.0	0.04	17.36	0.00	2.563	6.18	4.99	4.3	95.7	0.0	-0.90	1.97	0.64	0.77	1.26	3326	425	4	0	2	0	0	logfile
✔	9F9Y	50263	2024-09-30	2024-05-09	2.8	3.34	2.80	3.1	0.004	0.52	0.0	0.04	10.39	0.00	2.261	5.28	0.52	2.3	97.7	0.0	0.45	0.82	0.90	3.88	3.1	0.003	0.55	0.0	0.04	12.09	0.00	2.567	5.34	1.31	2.3	97.7	0.0	0.56	0.39	0.82	0.90	3.31	24810	3078	15	0	57	0	0	logfile
✔	8ZGT	60090	2024-09-24	2024-05-09	2.96	3.17	2.99	3.2	0.004	0.79	0.0	0.05	18.71	0.01	2.251	2.24	4.14	4.9	95.0	0.1	-0.71	0.65	0.81	3.12	3.2	0.003	0.61	0.0	0.05	17.25	0.00	2.442	3.48	2.83	4.6	95.3	0.1	1.01	0.32	0.63	0.80	2.90	8915	1077	13	0	14	0	0	logfile
✔	8ZGS	60089	2024-09-24	2024-05-09	3.04	3.27	3.08	3.3	0.007	0.75	0.0	0.05	18.16	0.01	2.217	6.51	0.61	4.3	95.7	0.0	0.87	0.62	0.79	2.99	3.3	0.004	0.58	0.0	0.04	17.12	0.00	2.434	3.42	3.94	4.3	95.7	0.0	1.36	0.33	0.65	0.82	2.69	8915	1077	13	0	14	0	0	logfile
✘	8ZFM	60065	2024-09-27	2024-05-08	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17120	2060	25	0	30	10	0	logfile
✔	8ZFL	60064	2024-09-27	2024-05-08	2.61	2.71	2.56	2.8	0.003	0.51	0.0	0.04	16.53	0.00	2.236	3.12	0.69	2.1	97.9	0.0	1.07	0.69	0.87	4.20	2.8	0.002	0.60	0.0	0.05	16.89	0.00	2.628	2.95	1.71	2.0	98.0	0.0	2.43	0.55	0.73	0.90	4.31	17070	2060	20	0	25	0	0	logfile
✔	9BP6	44762	2024-09-26	2024-05-07	3.1	3.37	3.02	3.3	0.005	0.88	0.0	0.05	16.03	0.01	1.963	3.03	0.14	2.7	97.3	0.0	0.29	0.66	0.75	3.00	3.3	0.003	0.58	0.0	0.04	17.08	0.00	1.926	5.58	2.75	2.2	97.8	0.0	0.64	0.67	0.74	0.83	3.09	13631	1732	8	0	8	0	0	logfile
✔	8ZFJ	60062	2024-09-24	2024-05-07	3.1	3.31	3.11	3.3	0.003	0.58	0.0	0.04	16.99	0.00	2.131	11.54	0.62	3.4	96.6	0.0	0.74	0.55	0.73	2.85	3.3	0.003	0.58	0.0	0.04	17.32	0.00	2.546	7.92	3.54	3.3	96.7	0.0	1.08	0.56	0.65	0.81	2.02	8903	1132	5	0	0	0	0	logfile
✔	8ZEE	60026	2024-09-28	2024-05-06	2.9	2.66	2.99	3.3	0.007	1.19	0.0	0.04	18.03	0.01	2.080	5.25	0.00	2.7	97.2	0.1	1.55	0.78	0.82	2.75	3.3	0.004	0.61	0.0	0.04	16.89	0.00	2.334	5.69	1.53	3.5	96.5	0.0	1.59	0.41	0.79	0.85	2.47	20218	2101	26	0	70	0	0	logfile
✔	9F6K	50227	2024-09-25	2024-05-01	4.2	4.50	4.10	4.4	0.003	0.66	0.0	0.04	16.57	0.01	2.304	2.22	0.10	2.1	97.9	0.0	-1.36	0.74	0.79	—	4.3	0.003	0.61	0.0	0.04	16.27	0.00	2.480	4.85	0.00	2.1	97.9	0.0	0.95	1.65	0.76	0.81	—	9637	1118	4	26	1	0	0	logfile
✔	9F6J	50226	2024-09-25	2024-05-01	3.9	4.11	3.87	4.0	0.003	0.64	0.0	0.04	16.08	0.01	2.253	1.83	0.00	1.1	98.9	0.0	-1.09	0.75	0.79	1.83	4.0	0.003	0.62	0.0	0.04	17.92	0.00	2.525	4.86	2.12	2.2	97.8	0.0	0.64	1.68	0.76	0.81	1.61	9751	1118	4	32	1	0	0	logfile
✔	9F6L	50228	2024-09-25	2024-05-01	3.9	4.20	3.90	4.1	0.003	0.67	0.0	0.04	16.41	0.01	2.141	1.48	0.00	1.9	98.1	0.0	-1.02	0.75	0.80	1.37	4.1	0.002	0.61	0.0	0.04	17.93	0.00	2.339	4.32	1.11	1.5	98.5	0.0	1.49	0.69	0.76	0.82	0.71	9639	1118	4	26	3	0	0	logfile
✔	8ZCJ	39931	2024-09-24	2024-04-29	3.09	3.33	3.11	3.4	0.007	0.93	1.0	0.05	16.04	0.01	2.258	9.36	0.44	5.3	94.6	0.1	-1.54	0.62	0.69	1.51	3.3	0.003	0.69	0.0	0.04	16.47	0.00	2.245	9.43	3.67	4.7	95.3	0.0	-1.15	1.14	0.63	0.70	1.96	7808	1126	7	0	1	0	0	logfile
✔	9BKK	44643	2024-09-24	2024-04-29	2.51	2.85	2.68	2.9	0.012	1.75	2.0	0.10	12.29	0.01	2.388	6.33	2.54	4.5	94.6	0.9	-1.67	0.46	0.61	2.41	2.9	0.003	0.61	0.0	0.04	16.12	0.00	2.424	5.36	2.25	2.3	97.7	0.0	1.51	1.15	0.56	0.73	2.12	6809	890	6	0	1	0	0	logfile
✘	9BKJ	44642	2024-09-24	2024-04-29	2.59	2.90	2.70	2.9	0.005	0.75	0.0	0.05	12.93	0.00	2.260	9.17	0.71	2.0	97.8	0.2	1.02	0.61	0.68	3.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6795	891	6	0	1	0	0	logfile
✔	8ZC1	39919	2024-09-23	2024-04-28	4.17	4.43	4.20	4.3	0.003	0.75	0.0	0.05	13.38	0.01	2.313	5.92	0.00	4.3	95.7	0.0	-1.66	0.73	0.72	—	4.3	0.003	0.65	0.0	0.05	13.45	0.00	2.494	9.72	0.00	5.8	94.2	0.0	-1.44	0.60	0.74	0.74	—	4570	597	3	0	0	0	0	logfile
✔	8ZC5	39923	2024-09-24	2024-04-28	3.91	4.07	3.86	4.0	0.004	0.76	0.0	0.05	13.55	0.01	2.258	4.88	0.00	4.4	95.6	0.0	-1.55	0.74	0.78	2.73	4.0	0.003	0.67	0.0	0.05	14.99	0.00	2.515	8.18	1.71	4.4	95.6	0.0	-0.90	1.46	0.74	0.79	2.49	6515	830	8	0	2	0	0	logfile

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