Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZBQ	39907	2024-09-24	2024-04-27	3.03	3.22	3.02	3.2	0.006	0.92	2.0	0.05	16.51	0.01	2.261	24.87	6.41	9.8	90.2	0.0	-2.05	0.66	0.78	2.44	3.2	0.003	0.64	0.0	0.04	17.04	0.00	2.475	12.59	4.08	6.7	93.3	0.0	-0.95	1.28	0.66	0.80	2.32	6346	779	2	0	0	0	0	logfile
✔	8ZBE	39901	2024-09-24	2024-04-26	3.24	3.44	3.22	3.4	0.005	0.90	0.0	0.05	15.39	0.00	2.276	11.65	0.00	6.2	93.8	0.0	-2.05	0.60	0.66	0.71	3.4	0.003	0.63	0.0	0.04	16.15	0.00	2.550	8.10	5.82	5.2	94.8	0.0	-0.93	0.44	0.61	0.67	1.04	7489	1113	7	0	1	0	0	logfile
✔	9F45	50184	2024-09-25	2024-04-26	3.74	4.61	—	3.8	0.003	0.50	0.0	0.04	11.49	0.00	2.145	8.38	2.01	2.6	97.3	0.1	2.22	0.90	0.81	0.74	3.8	0.003	0.67	0.0	0.04	13.64	0.00	2.331	11.71	1.52	2.9	97.1	0.0	1.71	1.49	0.91	0.83	0.91	56848	7140	10	0	2	0	0	logfile
✘	9F43	50182	2024-09-24	2024-04-26	3.49	3.69	3.45	3.7	0.002	0.49	0.0	0.04	14.27	0.00	2.074	5.62	0.21	2.3	97.7	0.0	1.09	0.63	0.77	1.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8465	1061	2	0	0	0	0	logfile
✔	8ZB9	39898	2024-09-23	2024-04-26	3.31	3.44	3.32	3.5	0.007	0.87	0.0	0.05	16.83	0.01	2.267	16.36	0.37	14.2	85.8	0.0	-3.11	0.73	0.86	3.12	3.5	0.003	0.62	0.0	0.04	17.55	0.00	2.534	6.92	5.16	9.3	90.7	0.0	-2.10	0.43	0.72	0.84	3.11	4904	622	2	0	0	0	0	logfile
✔	9F42	50181	2024-09-24	2024-04-26	3.27	3.49	3.23	3.5	0.002	0.48	0.0	0.04	12.23	0.00	2.189	6.92	1.81	3.0	97.0	0.0	0.35	0.59	0.74	2.02	3.5	0.003	0.58	0.0	0.04	15.14	0.00	2.580	10.58	3.20	3.9	96.1	0.0	0.07	1.42	0.55	0.74	2.15	8465	1061	2	0	0	0	0	logfile
✔	8ZBA	39899	2024-09-25	2024-04-26	3.57	3.81	3.60	3.8	0.003	0.59	0.0	0.04	13.82	0.00	2.234	8.37	0.00	10.7	89.3	0.0	-2.46	0.70	0.76	2.09	3.8	0.004	0.69	0.0	0.05	16.70	0.00	2.433	9.24	3.08	10.9	89.0	0.1	-2.51	2.02	0.72	0.79	1.88	9973	1267	4	0	0	0	0	logfile
✔	9F44	50183	2024-09-25	2024-04-26	3.68	4.36	3.71	3.9	0.003	0.51	0.0	0.04	13.42	0.00	2.161	7.02	1.65	2.7	97.3	0.0	2.01	0.90	0.80	0.86	4.0	0.003	0.65	0.0	0.04	14.84	0.00	2.443	10.04	1.74	2.7	97.2	0.1	1.72	0.56	0.90	0.82	0.97	56848	7140	10	0	2	0	0	logfile
✘	8ZAP	39883	2024-09-24	2024-04-25	2.6	2.77	2.58	2.8	0.003	0.60	0.0	0.04	16.03	0.01	1.487	8.32	4.19	2.6	97.4	0.0	1.24	0.71	0.89	4.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6442	776	9	0	27	36	0	logfile
✘	8ZAN	39881	2024-09-23	2024-04-25	2.4	2.80	2.50	2.7	0.003	0.65	0.0	0.04	17.05	0.01	2.309	9.70	2.96	5.3	93.4	1.2	1.81	0.65	0.89	4.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3938	492	4	0	2	0	0	logfile
✘	8ZAM	39880	2024-09-23	2024-04-25	2.5	2.87	2.53	2.8	0.007	0.87	0.0	0.04	22.82	0.01	2.265	9.50	2.46	5.3	94.7	0.0	1.70	0.60	0.88	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4000	492	4	0	2	0	0	logfile
✘	8ZAQ	39884	2024-09-24	2024-04-25	2.6	2.80	2.62	2.8	0.003	0.59	0.0	0.04	16.95	0.01	1.092	8.94	2.39	2.6	97.4	0.0	1.48	0.69	0.89	4.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6449	776	9	0	27	36	0	logfile
✘	8ZAo	39882	2024-09-24	2024-04-25	2.6	3.07	2.73	3.0	0.003	0.57	0.0	0.04	15.64	0.01	1.601	7.52	1.64	1.2	98.8	0.0	1.98	0.53	0.85	5.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6432	777	9	0	18	30	0	logfile
✔	8Z9Z	39873	2024-09-26	2024-04-24	3.5	3.90	3.63	3.8	0.002	0.48	0.0	0.04	18.14	0.00	2.209	9.03	0.29	2.5	97.5	0.0	3.18	0.61	0.77	1.29	3.8	0.003	0.49	0.0	0.04	18.32	0.00	2.441	7.82	3.77	2.3	97.7	0.0	3.23	0.28	0.61	0.79	1.33	12648	1519	8	0	6	0	0	logfile
✔	9BiS	44600	2024-09-25	2024-04-24	3.2	3.55	3.16	3.4	0.004	0.78	0.0	0.04	18.67	0.00	1.376	7.08	0.40	8.7	91.3	0.0	0.07	0.59	0.82	2.90	3.4	0.003	0.57	0.0	0.04	18.34	0.00	2.278	4.65	1.60	7.0	93.0	0.0	0.77	0.78	0.61	0.84	3.10	9444	595	3	0	1	0	4734	logfile
✔	9BiU	44602	2024-09-25	2024-04-24	2.9	3.33	2.90	3.2	0.003	0.56	0.0	0.04	17.10	0.00	2.204	4.85	2.00	7.0	93.0	0.0	0.77	0.63	0.84	2.63	3.2	0.003	0.59	0.0	0.04	17.16	0.00	2.278	5.49	2.59	6.5	93.5	0.0	0.80	0.83	0.62	0.85	2.50	9458	595	3	0	1	0	4738	logfile
✔	9BiT	44601	2024-09-25	2024-04-24	3.1	3.27	3.05	3.2	0.003	0.60	0.0	0.04	18.48	0.01	2.073	6.13	1.60	6.8	93.2	0.0	-0.05	0.60	0.83	2.75	3.2	0.003	0.57	0.0	0.04	18.31	0.00	2.248	4.97	2.80	6.8	93.2	0.0	0.47	0.32	0.63	0.85	2.60	9448	595	3	0	1	0	4734	logfile
✔	8Z9M	39863	2024-09-29	2024-04-23	3.3	2.26	—	2.0	0.002	0.51	1.0	0.04	14.42	0.00	2.228	4.73	0.24	3.5	96.5	0.0	0.06	0.78	0.77	1.95	2.1	0.005	0.65	0.0	0.04	16.64	0.01	2.495	3.92	1.67	4.8	95.2	0.0	-0.24	0.50	0.82	0.83	2.75	22016	2786	4	0	0	0	0	logfile
✔	9F2K	50149	2024-09-27	2024-04-23	2.48	2.66	2.53	2.7	0.004	0.64	0.0	0.04	16.42	0.00	2.026	10.48	1.14	2.2	97.8	0.0	-0.09	0.65	0.83	4.08	2.7	0.005	0.68	0.0	0.05	16.61	0.00	2.495	6.14	2.63	2.0	98.0	0.0	0.58	0.89	0.66	0.84	4.91	16184	2052	8	0	4	0	0	logfile
✔	8Z9Q	39867	2024-09-26	2024-04-23	2.33	2.83	2.42	2.7	0.003	0.53	0.0	0.04	13.21	0.00	2.117	8.28	0.00	3.5	96.5	0.0	0.58	0.70	0.83	4.40	2.7	0.003	0.58	0.0	0.04	15.99	0.00	2.492	6.78	1.11	3.4	96.6	0.0	0.79	0.37	0.71	0.85	4.10	12362	1505	4	9	1	0	0	logfile

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