Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SYN	40885	2024-10-11	2023-05-25	2.94	2.38	2.98	2.0	0.004	0.62	0.0	0.04	13.19	0.00	2.182	9.38	0.00	2.7	97.3	0.0	0.88	0.71	0.70	2.87	2.0	0.005	0.74	0.0	0.05	16.33	0.00	2.468	9.98	1.42	2.2	97.8	0.0	1.35	1.16	0.74	0.75	2.78	10069	1259	3	0	0	0	0	logfile
✔	8P5X	17456	2024-10-11	2023-05-24	2.29	2.20	2.36	1.9	0.013	1.76	0.0	0.09	14.21	0.00	2.250	0.66	0.21	3.1	96.9	0.0	-1.93	0.89	0.90	4.98	2.0	0.002	0.54	0.0	0.04	16.34	0.00	1.990	2.25	0.93	2.0	98.0	0.0	1.39	0.96	0.87	0.87	4.07	55346	7110	18	0	12	0	0	logfile
✔	8SXT	40858	2024-10-10	2023-05-24	3.3	2.61	3.32	3.0	0.003	0.60	0.0	0.04	17.79	0.00	2.039	11.35	0.45	3.7	96.1	0.1	0.31	0.74	0.76	2.14	2.2	0.003	0.65	0.0	0.04	18.41	0.00	2.016	9.63	3.47	4.2	95.8	0.0	0.66	0.62	0.75	0.79	2.16	6382	726	5	18	2	0	0	logfile
✔	8SXU	40859	2024-10-10	2023-05-24	3.66	2.81	3.70	3.8	0.003	0.57	0.0	0.04	18.38	0.00	2.187	15.99	0.15	5.4	94.6	0.0	-0.09	0.64	0.66	0.42	2.0	0.003	0.74	0.0	0.04	18.18	0.00	2.409	14.15	3.92	4.7	95.3	0.0	-0.25	0.64	0.65	0.64	0.42	6207	726	2	10	0	0	0	logfile
✔	8P5T	17452	2024-10-10	2023-05-24	2.17	2.19	2.21	1.9	0.011	1.21	0.0	0.08	13.97	0.01	2.125	1.04	0.42	3.2	96.8	0.0	-2.13	0.91	0.92	5.21	1.9	0.005	0.64	0.0	0.05	16.51	0.00	1.948	1.85	0.89	2.5	97.5	0.0	1.12	0.39	0.89	0.89	4.39	52590	6714	12	0	18	0	0	logfile
✘	8P5U	17453	2024-10-10	2023-05-24	2.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52878	6714	12	0	24	0	0	logfile
✔	8P5E	17449	2024-10-10	2023-05-24	3.9	4.01	3.97	3.7	0.003	0.55	0.0	0.04	14.56	0.00	1.929	7.86	0.00	4.7	95.2	0.0	-0.06	0.86	0.79	1.15	3.6	0.005	0.67	0.0	0.04	16.28	0.00	1.907	8.36	1.36	5.6	94.3	0.0	0.00	0.46	0.86	0.80	1.06	53414	6633	22	26	16	0	0	logfile
✔	8P4T	17428	2024-10-11	2023-05-23	2.96	3.61	2.92	3.4	0.002	0.54	0.0	0.04	11.92	0.00	2.027	7.87	0.00	2.5	97.5	0.0	0.32	0.81	0.80	3.12	3.4	0.003	0.68	0.0	0.04	14.59	0.00	2.280	7.21	2.76	1.5	98.5	0.0	1.54	1.15	0.75	0.85	2.73	9976	1122	24	0	64	0	0	logfile
✔	8JHi	36266	2024-10-10	2023-05-23	3.2	3.84	3.46	3.8	0.004	0.71	0.0	0.05	14.30	0.01	2.158	7.15	0.00	5.4	94.6	0.0	-0.87	0.65	0.79	1.91	3.8	0.003	0.71	0.0	0.04	16.02	0.00	2.360	10.03	2.91	5.6	94.4	0.0	-0.21	0.96	0.63	0.81	1.87	8562	1077	5	0	0	0	0	logfile
✘	8P50	17435	2024-10-13	2023-05-23	4.04	5.40	4.05	3.9	0.004	0.88	0.0	0.05	14.21	0.01	1.901	6.41	0.00	4.7	95.3	0.0	-1.98	0.62	0.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13714	1735	3	0	2	0	0	logfile
✘	8P4X	17429	2024-10-11	2023-05-23	2.57	2.74	2.57	2.8	0.004	0.56	0.0	0.04	13.12	0.00	2.112	1.65	0.00	3.6	96.4	0.0	-0.11	0.74	0.85	5.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8756	1052	6	0	4	84	0	logfile
✔	8P51	17436	2024-10-12	2023-05-23	3.55	4.39	3.63	4.0	0.006	0.83	0.0	0.05	13.50	0.01	2.113	4.21	0.00	4.4	95.6	0.0	-1.93	0.82	0.71	2.07	4.0	0.003	0.69	0.0	0.04	14.93	0.00	2.526	6.09	0.98	2.7	97.2	0.1	1.16	1.70	0.88	0.85	1.44	12389	1574	1	0	0	0	0	logfile
✔	8JHF	36264	2024-10-13	2023-05-23	3.68	3.48	3.63	3.5	0.004	0.61	0.0	0.03	27.23	0.00	2.111	8.03	0.70	4.8	95.2	0.0	0.59	0.80	0.82	1.35	3.5	0.004	0.59	0.0	0.03	27.72	0.00	2.477	7.20	2.11	4.7	95.3	0.0	1.01	0.39	0.80	0.83	0.98	14703	1029	12	320	2	0	0	logfile
✔	8JHC	36262	2024-10-10	2023-05-23	3.3	2.39	3.35	2.1	0.004	0.70	0.0	0.05	14.17	0.01	2.227	5.42	0.00	5.7	94.3	0.0	-1.38	0.75	0.76	2.45	2.1	0.003	0.65	0.0	0.04	16.06	0.01	2.488	9.57	3.22	5.6	94.4	0.0	0.03	0.48	0.75	0.76	1.67	7563	986	4	0	0	0	0	logfile
✔	8JHB	36261	2024-10-10	2023-05-23	3.3	2.35	3.35	2.1	0.003	0.75	0.0	0.05	14.03	0.00	2.146	6.34	0.11	4.7	95.3	0.0	-0.77	0.72	0.71	1.81	2.0	0.003	0.64	0.0	0.04	16.44	0.00	2.490	8.03	2.25	4.5	95.5	0.0	0.06	0.45	0.72	0.73	1.99	8648	1093	5	0	0	0	0	logfile
✔	8JHG	36265	2024-10-13	2023-05-23	3.58	3.41	3.62	3.4	0.004	0.59	0.0	0.03	26.86	0.00	2.152	8.47	0.92	5.4	94.6	0.0	0.29	0.81	0.83	1.74	3.4	0.004	0.60	0.0	0.03	26.74	0.00	2.471	7.69	0.92	5.8	94.2	0.0	0.87	1.34	0.81	0.84	1.08	14829	1040	12	320	2	0	0	logfile
✔	8P53	17445	2024-10-14	2023-05-23	2.7	2.29	2.79	2.0	0.004	0.65	0.0	0.04	13.22	0.00	1.943	8.14	0.11	3.2	96.8	0.0	-0.24	0.79	0.81	3.54	2.0	0.003	0.80	0.0	0.04	16.66	0.00	1.699	7.87	2.17	3.5	96.5	0.0	0.56	0.45	0.80	0.82	2.95	16299	2071	8	0	4	0	0	logfile
✔	8SXJ	40854	2024-10-14	2023-05-22	4.0	4.15	4.01	4.2	0.019	1.76	7.0	0.09	13.38	0.02	2.555	0.19	1.10	7.0	92.3	0.7	-1.09	0.63	0.78	—	4.2	0.005	0.76	0.0	0.05	16.06	0.00	2.459	9.06	2.71	5.6	94.3	0.0	-0.50	0.78	0.66	0.80	—	19050	2415	12	0	0	0	0	logfile
✔	8JH5	36254	2024-10-10	2023-05-22	3.7	3.92	3.73	3.9	0.006	0.96	0.0	0.05	9.93	0.01	2.031	3.06	0.00	5.9	94.1	0.0	-5.76	0.61	0.83	2.59	3.9	0.003	0.70	0.0	0.04	14.34	0.00	2.454	5.36	3.14	2.7	97.3	0.0	-0.33	0.73	0.60	0.82	1.19	7734	988	6	0	2	0	0	logfile
✔	8SXE	40849	2024-10-10	2023-05-22	3.55	3.79	3.56	3.8	0.002	0.47	0.0	0.04	14.58	0.00	2.089	6.48	0.00	3.6	96.4	0.0	0.44	0.75	0.76	1.64	3.8	0.004	0.62	0.0	0.04	16.61	0.00	2.483	6.90	2.50	4.5	95.5	0.0	0.51	0.51	0.76	0.77	1.21	8285	1094	6	0	7	0	0	logfile

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