Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SXJ	40854	2024-10-14	2023-05-22	4.0	4.15	4.01	4.2	0.019	1.76	7.0	0.09	13.38	0.02	2.555	0.19	1.10	7.0	92.3	0.7	-1.09	0.63	0.78	—	4.2	0.005	0.76	0.0	0.05	16.06	0.00	2.459	9.06	2.71	5.6	94.3	0.0	-0.50	0.78	0.66	0.80	—	19050	2415	12	0	0	0	0	logfile
✔	8SXN	40855	2024-10-14	2023-05-22	4.04	4.34	4.06	4.1	0.012	1.26	0.0	0.06	12.20	0.01	2.369	2.31	0.05	3.0	95.8	1.1	-0.38	0.87	0.82	—	4.1	0.003	0.65	0.0	0.04	14.12	0.00	2.413	8.49	0.00	5.5	94.1	0.4	0.21	1.87	0.87	0.82	—	17708	2200	6	0	4	0	0	logfile
✔	8SXF	40850	2024-10-12	2023-05-22	3.92	4.19	3.95	4.0	0.002	0.48	0.0	0.04	15.08	0.00	2.063	9.57	0.00	3.7	96.3	0.0	1.25	0.79	0.72	0.88	4.0	0.003	0.60	0.0	0.04	16.70	0.00	2.476	9.21	2.26	2.9	97.1	0.0	1.12	0.57	0.80	0.73	0.65	11321	1471	5	0	6	0	0	logfile
✔	8SXH	40852	2024-10-15	2023-05-22	3.94	4.17	3.93	4.1	0.003	0.46	0.0	0.04	13.70	0.00	1.996	7.04	0.00	4.2	95.8	0.0	1.11	0.80	0.77	1.36	4.1	0.003	0.65	0.0	0.04	15.65	0.00	2.465	7.75	1.38	3.4	96.6	0.0	0.86	0.51	0.80	0.77	1.16	19719	2604	12	0	21	0	0	logfile
✔	8SXG	40851	2024-10-12	2023-05-22	4.14	4.41	4.12	4.2	0.002	0.50	0.0	0.04	14.01	0.00	1.889	8.99	0.00	3.3	96.7	0.0	0.78	0.83	0.74	—	4.2	0.007	0.78	0.0	0.05	14.72	0.01	2.406	15.62	0.00	5.3	94.7	0.0	0.10	0.49	0.83	0.77	—	11372	1477	5	0	6	0	0	logfile
✔	8SXE	40849	2024-10-10	2023-05-22	3.55	3.79	3.56	3.8	0.002	0.47	0.0	0.04	14.58	0.00	2.089	6.48	0.00	3.6	96.4	0.0	0.44	0.75	0.76	1.64	3.8	0.004	0.62	0.0	0.04	16.61	0.00	2.483	6.90	2.50	4.5	95.5	0.0	0.51	0.51	0.76	0.77	1.21	8285	1094	6	0	7	0	0	logfile
✔	8SXB	40830	2024-10-14	2023-05-20	2.9	3.19	2.99	3.2	0.006	0.83	0.0	0.06	12.61	0.01	2.288	0.97	0.00	2.0	98.0	0.0	-0.86	0.61	0.81	2.92	3.1	0.003	0.53	0.0	0.04	14.65	0.00	2.458	3.60	1.00	2.3	97.7	0.0	1.84	1.15	0.58	0.80	2.09	18604	1152	2	0	1	1	9405	logfile
✔	8JGB	36229	2024-10-10	2023-05-20	2.84	2.28	2.92	2.0	0.010	1.22	2.0	0.07	15.63	0.01	2.230	7.27	2.89	6.4	93.6	0.0	-2.42	0.83	0.82	3.66	2.0	0.004	0.69	0.0	0.04	16.63	0.00	2.544	4.23	3.67	3.8	96.2	0.0	-0.19	0.53	0.83	0.83	3.65	7796	1062	6	0	0	0	0	logfile
✔	8SX8	40827	2024-10-15	2023-05-20	3.5	3.82	3.45	3.7	0.005	0.84	0.0	0.06	12.22	0.01	2.132	0.95	0.10	2.0	98.0	0.0	-1.93	0.62	0.79	2.30	3.7	0.004	0.58	0.0	0.04	14.37	0.00	2.338	5.04	0.98	1.7	98.3	0.0	1.50	1.17	0.63	0.79	1.24	19025	1175	2	0	1	1	9610	logfile
✔	8JGA	36228	2024-10-09	2023-05-20	3.68	3.83	3.25	3.8	0.005	0.81	0.0	0.05	14.34	0.01	2.230	16.80	1.24	7.0	92.5	0.5	-2.18	0.58	0.81	2.54	3.8	0.003	0.71	0.0	0.05	16.28	0.00	2.634	10.01	2.48	5.0	95.0	0.0	-1.06	0.43	0.57	0.80	2.22	1516	202	1	0	0	0	0	logfile
✔	8JGF	36232	2024-10-10	2023-05-20	2.7	2.39	2.58	3.0	0.008	0.86	1.0	0.05	15.55	0.00	2.221	9.14	0.58	4.3	95.7	0.0	0.21	0.81	0.78	3.15	3.0	0.003	0.67	0.0	0.04	17.04	0.00	2.451	8.59	3.25	2.8	97.2	0.0	1.39	1.64	0.80	0.82	2.95	8338	1101	6	0	0	0	0	logfile
✔	8JGC	36230	2024-10-09	2023-05-20	3.44	3.77	3.05	3.8	0.008	1.05	0.0	0.07	15.17	0.01	2.251	23.58	4.35	9.0	90.0	1.0	-3.45	0.55	0.78	2.82	3.8	0.003	0.61	0.0	0.05	15.99	0.00	2.609	5.17	2.48	4.5	95.5	0.0	-0.08	1.31	0.54	0.79	2.63	1516	202	1	0	0	0	0	logfile
✔	8SX7	40826	2024-10-15	2023-05-20	2.7	3.18	2.98	3.2	0.005	0.70	0.0	0.06	12.40	0.01	2.180	2.39	0.39	2.5	97.5	0.0	-1.48	0.54	0.65	1.29	3.2	0.004	0.60	0.0	0.04	15.61	0.00	2.251	4.58	1.55	2.0	98.0	0.0	1.60	1.38	0.55	0.77	1.94	19237	1188	2	0	1	3	9719	logfile
✘	8SXA	40829	2024-10-14	2023-05-20	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18596	1153	1	0	0	0	9418	logfile
✔	8JGG	36233	2024-10-10	2023-05-20	3.0	3.29	3.17	3.2	0.006	0.94	0.0	0.05	14.77	0.00	2.288	9.81	1.05	5.8	94.2	0.0	-1.51	0.60	0.81	3.17	3.2	0.003	0.57	0.0	0.04	15.53	0.00	2.543	3.93	3.29	2.9	97.1	0.0	0.18	0.38	0.62	0.83	2.71	7889	1076	6	0	0	0	0	logfile
✘	8SX9	40828	2024-10-14	2023-05-20	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18596	1153	1	0	0	0	9418	logfile
✔	8SWW	40823	2024-10-13	2023-05-19	3.4	3.55	3.37	3.5	0.021	1.69	0.0	0.12	10.73	0.01	2.231	0.95	0.00	2.7	97.3	0.0	0.60	0.60	0.80	3.83	3.5	0.003	0.65	0.0	0.04	14.42	0.00	2.414	6.65	2.78	3.3	96.7	0.0	-0.22	1.63	0.58	0.82	2.66	14799	1657	20	0	267	0	0	logfile
✔	8P49	17402	2024-10-14	2023-05-19	2.79	3.50	2.98	3.4	0.002	0.44	0.0	0.04	11.69	0.00	2.233	3.77	0.95	1.8	98.2	0.0	1.58	0.78	0.85	2.78	3.4	0.003	0.60	0.0	0.04	14.08	0.00	2.469	4.84	1.15	1.4	98.6	0.0	1.48	0.94	0.76	0.82	2.63	17914	2192	6	0	0	0	0	logfile
✘	8SWV	40822	2024-10-13	2023-05-19	3.37	3.49	3.26	3.5	0.022	1.65	0.0	0.13	11.21	0.01	2.201	0.94	0.21	2.0	97.9	0.1	0.72	0.64	0.82	3.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14870	1626	21	0	290	0	0	logfile
✔	8SWX	40824	2024-10-13	2023-05-19	3.9	4.01	3.79	4.0	0.022	1.69	0.0	0.14	11.07	0.01	2.272	1.27	0.41	2.4	97.5	0.1	0.79	0.59	0.80	2.83	4.0	0.003	0.70	0.0	0.05	14.95	0.00	2.526	6.54	4.26	3.9	96.0	0.1	-0.08	0.81	0.56	0.81	1.99	15170	1658	20	0	278	0	0	logfile

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