Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J3W	35967	2024-10-11	2023-04-18	3.07	3.28	3.11	3.3	0.004	0.68	0.0	0.04	13.93	0.00	1.891	16.07	0.00	3.8	96.2	0.0	-1.89	0.58	0.76	2.14	3.3	0.004	0.64	0.0	0.04	15.50	0.00	2.527	9.73	1.69	1.4	98.6	0.0	0.52	1.24	0.56	0.78	1.35	9739	1218	2	0	1	0	0	logfile
✔	8oSG	17152	2024-10-13	2023-04-18	3.8	4.13	3.92	4.0	0.004	0.74	0.0	0.04	18.75	0.00	2.009	9.70	0.19	8.1	91.8	0.1	-1.30	0.80	0.83	0.89	4.0	0.003	0.65	0.0	0.04	18.73	0.00	1.993	6.42	3.95	6.4	93.6	0.0	-1.00	0.36	0.80	0.82	0.75	14536	1833	12	0	10	0	0	logfile
✔	8oSH	17153	2024-10-10	2023-04-18	4.9	5.59	5.45	4.9	0.006	0.94	0.0	0.06	3.38	0.00	2.299	5.83	0.00	11.2	88.7	0.1	-0.55	0.82	0.82	—	4.9	0.003	0.63	0.0	0.04	4.47	0.00	2.431	3.78	0.00	14.2	85.8	0.0	-0.91	0.54	0.83	0.85	—	6770	1372	5	0	0	0	0	logfile
✔	8SK6	40556	2024-10-12	2023-04-18	2.96	3.57	3.01	3.4	0.002	0.44	0.0	0.04	8.10	0.00	2.218	5.79	0.86	0.4	99.6	0.0	0.87	0.84	0.88	4.80	3.4	0.005	0.61	0.0	0.04	12.68	0.00	2.515	5.40	1.15	1.4	98.6	0.0	0.81	0.46	0.83	0.88	4.30	12858	1686	6	0	0	0	0	logfile
✔	8oSF	17151	2024-10-13	2023-04-18	4.0	4.35	4.17	4.2	0.003	0.70	0.0	0.04	19.45	0.00	2.045	12.56	0.44	9.9	90.1	0.0	-1.80	0.80	0.77	—	4.2	0.003	0.72	0.0	0.04	19.10	0.00	1.903	10.85	4.58	11.3	88.7	0.0	-1.53	2.79	0.80	0.77	—	14529	1829	12	0	11	0	0	logfile
✘	8oRS	17131	2024-10-11	2023-04-17	4.3	3.48	3.31	3.3	0.003	0.55	0.0	0.05	13.61	0.00	2.121	7.43	0.00	4.5	95.5	0.0	0.02	0.49	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10124	1298	4	0	2	0	0	logfile
✔	8SiY	40522	2024-10-13	2023-04-17	2.9	3.59	2.98	3.2	0.006	0.64	0.0	0.05	26.20	0.01	1.993	5.69	1.38	2.8	97.2	0.0	1.37	0.87	0.83	3.33	3.2	0.003	0.64	0.0	0.04	27.08	0.00	2.507	8.19	2.44	3.4	96.5	0.1	2.02	0.64	0.87	0.89	2.37	14844	1118	12	294	0	0	0	logfile
✔	8SiK	40508	2024-10-13	2023-04-16	2.9	3.14	2.92	3.2	0.003	0.51	0.0	0.04	15.67	0.00	2.206	6.55	0.96	1.7	98.3	0.0	2.43	0.56	0.79	4.00	3.2	0.004	0.54	0.0	0.04	16.09	0.00	2.232	4.97	2.53	1.8	98.2	0.0	2.29	0.21	0.64	0.85	3.77	15832	1984	12	0	8	0	0	logfile
✔	8SiE	40507	2024-10-11	2023-04-16	2.7	2.88	2.78	2.9	0.005	0.67	0.0	0.17	21.89	0.01	1.491	5.47	0.19	3.7	96.3	0.0	1.29	0.63	0.84	2.81	2.9	0.003	0.54	0.0	0.04	16.08	0.00	2.385	5.09	1.91	3.6	96.4	0.0	1.40	0.33	0.62	0.86	2.66	10398	1226	4	0	38	0	0	logfile
✔	8SHG	40487	2024-10-14	2023-04-14	2.8	3.46	2.87	3.2	0.004	0.52	0.0	0.04	13.86	0.00	1.958	6.91	0.00	3.2	96.7	0.0	1.72	0.85	0.87	2.79	3.2	0.003	0.57	0.0	0.04	15.17	0.00	1.669	5.74	0.59	3.2	96.8	0.0	1.81	0.27	0.83	0.87	2.56	67663	8787	50	0	48	19	0	logfile
✔	8J20	35940	2024-10-11	2023-04-14	3.2	2.23	3.26	2.1	0.006	0.71	2.0	0.06	17.90	0.00	2.197	10.83	0.62	4.4	95.0	0.5	0.12	0.74	0.73	1.15	2.0	0.004	0.72	0.0	0.05	18.03	0.00	2.460	11.25	6.35	5.4	94.2	0.4	-0.53	1.15	0.75	0.76	1.58	8832	1125	6	0	2	0	0	logfile
✔	8SHP	40491	2024-10-14	2023-04-14	3.0	3.53	3.00	3.3	0.005	0.55	0.0	0.04	14.05	0.00	1.905	7.29	0.00	3.7	96.3	0.0	1.58	0.85	0.88	2.71	3.3	0.003	0.59	0.0	0.04	15.45	0.00	1.322	6.22	0.71	3.5	96.5	0.0	1.60	0.29	0.86	0.89	2.39	68049	8834	50	0	48	19	0	logfile
✘	8SHN	40489	2024-10-13	2023-04-14	2.8	3.49	2.91	3.2	0.004	0.53	0.0	0.04	13.80	0.00	1.936	7.01	0.00	3.0	97.0	0.0	1.72	0.86	0.89	2.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	66003	8578	49	0	48	19	0	logfile
✔	8SiB	40505	2024-10-09	2023-04-14	2.62	3.44	2.68	3.3	0.007	1.30	0.0	0.06	11.70	0.01	2.265	4.20	0.78	12.9	85.8	1.3	-5.28	0.73	0.84	3.54	3.3	0.003	0.90	0.0	0.05	15.76	0.00	2.459	9.52	2.33	13.1	86.2	0.7	-1.44	2.03	0.71	0.83	2.66	3544	454	1	0	0	0	0	logfile
✔	8SHF	40486	2024-10-14	2023-04-14	3.0	3.54	3.05	3.3	0.004	0.55	0.0	0.04	14.21	0.00	1.934	7.12	0.00	3.3	96.7	0.0	1.57	0.85	0.88	2.62	3.3	0.004	0.61	0.0	0.04	15.55	0.00	1.046	6.21	1.02	3.7	96.3	0.0	1.60	0.27	0.85	0.89	2.39	67730	8797	50	0	48	19	0	logfile
✔	8SHL	40488	2024-10-13	2023-04-14	3.0	3.53	3.01	3.3	0.004	0.53	0.0	0.04	14.11	0.00	1.935	7.02	0.00	3.5	96.5	0.0	1.71	0.85	0.88	2.64	3.3	0.004	0.62	0.0	0.04	15.53	0.00	1.871	6.07	0.92	3.8	96.2	0.0	1.50	0.28	0.86	0.90	2.39	67546	8771	50	0	48	19	0	logfile
✔	8SHQ	40492	2024-10-14	2023-04-14	2.9	3.47	2.91	3.2	0.004	0.51	0.0	0.04	14.16	0.00	1.938	6.37	0.00	3.3	96.7	0.0	1.83	0.87	0.89	2.72	3.2	0.002	0.57	0.0	0.04	15.31	0.00	1.898	6.00	0.37	2.9	97.0	0.0	1.96	1.09	0.87	0.89	2.32	68007	8828	50	0	48	19	0	logfile
✔	8SHT	40494	2024-10-14	2023-04-14	3.0	3.48	3.06	3.3	0.004	0.53	0.0	0.04	14.55	0.00	1.962	7.19	0.01	3.3	96.7	0.0	1.54	0.84	0.88	2.68	3.3	0.003	0.58	0.0	0.04	15.66	0.00	1.835	6.34	0.58	3.6	96.4	0.0	1.55	0.28	0.81	0.87	2.39	68272	8859	50	0	48	19	0	logfile
✔	8SHo	40490	2024-10-14	2023-04-14	3.0	3.47	3.07	3.3	0.006	0.57	0.0	0.04	14.70	0.00	1.924	7.41	0.01	3.8	96.2	0.0	1.54	0.83	0.88	2.71	3.3	0.003	0.59	0.0	0.04	15.86	0.00	1.303	6.24	0.75	3.7	96.3	0.0	1.50	1.52	0.83	0.89	2.48	67725	8791	50	0	48	19	0	logfile
✘	8J26	35945	2024-10-09	2023-04-14	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5406	427	6	90	1	0	0	logfile

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