Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SHo	40490	2024-10-14	2023-04-14	3.0	3.47	3.07	3.3	0.006	0.57	0.0	0.04	14.70	0.00	1.924	7.41	0.01	3.8	96.2	0.0	1.54	0.83	0.88	2.71	3.3	0.003	0.59	0.0	0.04	15.86	0.00	1.303	6.24	0.75	3.7	96.3	0.0	1.50	1.52	0.83	0.89	2.48	67725	8791	50	0	48	19	0	logfile
✔	8J28	35947	2024-10-09	2023-04-14	3.7	4.43	3.42	4.2	0.006	0.92	0.0	0.04	17.63	0.00	2.213	16.94	2.28	6.3	93.7	0.0	-1.56	0.53	0.75	0.95	4.3	0.004	0.93	0.0	0.05	18.58	0.00	2.336	14.74	4.18	4.0	96.0	0.0	-0.35	2.56	0.51	0.76	1.45	2499	315	5	0	1	0	0	logfile
✔	8SHS	40493	2024-10-13	2023-04-14	2.66	3.50	2.78	3.3	0.002	0.42	0.0	0.04	8.94	0.00	2.309	5.02	0.50	1.2	98.8	0.0	1.56	0.85	0.81	3.60	3.3	0.003	0.49	0.0	0.04	13.66	0.00	2.491	3.09	0.32	1.9	98.1	0.0	1.61	0.46	0.78	0.84	3.63	15156	1976	4	0	0	0	0	logfile
✔	8SHT	40494	2024-10-14	2023-04-14	3.0	3.48	3.06	3.3	0.004	0.53	0.0	0.04	14.55	0.00	1.962	7.19	0.01	3.3	96.7	0.0	1.54	0.84	0.88	2.68	3.3	0.003	0.58	0.0	0.04	15.66	0.00	1.835	6.34	0.58	3.6	96.4	0.0	1.55	0.28	0.81	0.87	2.39	68272	8859	50	0	48	19	0	logfile
✔	8J22	35942	2024-10-11	2023-04-14	3.2	2.24	3.18	2.1	0.003	0.64	3.0	0.06	17.81	0.00	2.029	7.45	0.00	2.4	97.2	0.4	1.17	0.75	0.75	1.62	2.0	0.004	0.62	0.0	0.04	18.07	0.00	2.512	5.98	4.08	3.9	95.9	0.2	0.83	0.44	0.77	0.78	1.78	8856	1132	6	0	1	0	0	logfile
✔	8J23	35943	2024-10-10	2023-04-14	3.2	2.25	3.17	2.1	0.002	0.57	2.0	0.06	17.34	0.01	2.116	7.78	0.43	3.3	96.5	0.2	0.73	0.74	0.74	1.18	2.1	0.004	0.63	0.0	0.04	17.31	0.01	2.583	8.45	4.53	3.8	96.2	0.0	0.59	1.65	0.75	0.76	1.96	8596	1101	5	0	0	0	0	logfile
✔	8SiB	40505	2024-10-09	2023-04-14	2.62	3.44	2.68	3.3	0.007	1.30	0.0	0.06	11.70	0.01	2.265	4.20	0.78	12.9	85.8	1.3	-5.28	0.73	0.84	3.54	3.3	0.003	0.90	0.0	0.05	15.76	0.00	2.459	9.52	2.33	13.1	86.2	0.7	-1.44	2.03	0.71	0.83	2.66	3544	454	1	0	0	0	0	logfile
✘	8J26	35945	2024-10-09	2023-04-14	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5406	427	6	90	1	0	0	logfile
✔	8oRM	17129	2024-10-09	2023-04-14	1.9	1.83	1.88	1.9	0.004	0.58	0.0	0.04	16.75	0.00	2.236	3.99	0.90	1.6	98.2	0.2	1.88	0.70	0.81	5.96	1.9	0.003	0.61	0.0	0.04	16.69	0.01	2.606	4.68	1.62	1.1	98.7	0.2	1.66	0.21	0.70	0.82	5.77	5341	632	7	0	2	210	0	logfile
✔	8J2F	35948	2024-10-10	2023-04-14	3.07	3.19	2.97	3.2	0.005	1.21	2.0	0.09	10.87	0.00	2.473	2.70	0.63	1.6	98.4	0.0	3.43	0.66	0.86	4.25	3.2	0.004	0.59	0.0	0.04	14.91	0.00	2.462	3.84	2.19	1.6	98.4	0.0	2.50	1.84	0.68	0.90	3.98	6164	768	4	0	6	0	0	logfile
✔	8J2M	35950	2024-10-10	2023-04-14	3.4	4.10	3.44	4.0	0.009	1.36	10.0	0.08	18.83	0.01	2.121	8.77	2.91	3.3	96.7	0.0	-2.01	0.59	0.75	2.41	4.0	0.003	0.85	0.0	0.04	17.66	0.00	2.493	12.49	4.07	2.3	97.7	0.0	1.34	1.40	0.52	0.79	1.64	6574	848	4	0	2	0	0	logfile
✔	8J24	35944	2024-10-10	2023-04-14	2.6	2.10	2.66	1.8	0.002	0.55	2.0	0.06	18.15	0.00	2.131	6.42	3.11	1.9	97.9	0.2	1.18	0.80	0.79	2.75	1.6	0.002	0.56	0.0	0.04	18.15	0.00	2.417	6.31	3.76	3.6	96.4	0.0	1.29	1.10	0.81	0.82	2.80	8626	1105	6	0	1	0	0	logfile
✔	8SH2	40477	2024-10-14	2023-04-13	3.74	3.89	3.81	3.9	0.006	1.20	0.0	0.06	13.35	0.01	2.321	14.58	0.35	4.8	95.2	0.0	-2.82	0.58	0.42	0.91	3.9	0.004	0.83	0.0	0.05	15.52	0.00	2.452	19.72	2.84	5.5	94.5	0.0	-1.88	1.22	0.64	0.50	1.07	18038	2254	12	0	0	0	0	logfile
✔	8oRD	17120	2024-10-13	2023-04-13	3.9	4.04	3.89	4.1	0.005	0.92	0.0	0.05	17.82	0.01	2.109	19.32	0.58	2.3	97.7	0.0	-0.41	0.55	0.81	1.69	4.0	0.004	0.82	0.0	0.05	18.01	0.01	2.463	14.86	4.50	2.5	97.5	0.0	0.14	1.56	0.56	0.82	1.50	14590	1850	10	0	10	0	0	logfile
✔	8SGZ	40474	2024-10-10	2023-04-13	3.2	2.69	3.12	3.1	0.004	0.79	0.0	0.05	13.30	0.00	2.154	15.29	1.21	7.4	92.6	0.1	-1.59	0.68	0.74	2.17	2.9	0.002	0.59	0.0	0.04	15.45	0.00	2.532	6.94	2.03	4.1	95.9	0.0	-0.67	1.35	0.72	0.82	2.11	53430	6876	18	0	6	0	0	logfile
✔	8oRG	17123	2024-10-09	2023-04-13	2.3	2.70	2.18	2.6	0.010	1.26	0.0	0.08	11.92	0.01	2.462	0.00	0.00	2.4	97.6	0.0	-2.52	0.32	0.76	4.82	2.6	0.004	0.61	0.0	0.05	16.55	0.00	2.396	1.01	2.63	1.6	98.4	0.0	-2.90	1.13	0.37	0.82	4.32	3966	258	3	0	0	0	2025	logfile
✔	8oRF	17122	2024-10-09	2023-04-13	2.5	2.71	2.32	2.7	0.010	1.27	0.0	0.07	11.76	0.01	2.508	0.00	0.00	5.1	94.9	0.0	-2.82	0.31	0.74	5.59	2.7	0.005	0.63	0.0	0.05	16.00	0.00	2.415	3.44	1.89	5.4	94.6	0.0	-3.53	1.09	0.38	0.82	5.36	4653	303	3	0	0	0	2382	logfile
✔	8J1N	35928	2024-10-09	2023-04-13	2.51	2.65	2.47	2.7	0.009	1.01	0.0	0.05	15.98	0.00	2.219	8.99	0.00	2.9	97.1	0.0	1.72	0.60	0.79	3.77	2.7	0.003	0.59	0.0	0.04	17.31	0.00	2.489	6.71	2.37	2.2	97.8	0.0	3.15	0.49	0.64	0.88	3.42	3292	414	3	0	4	0	0	logfile
✘	8J1Q	35930	2024-10-09	2023-04-13	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5447	427	6	90	1	0	0	logfile
✔	8SGW	40470	2024-10-11	2023-04-13	2.5	2.88	2.51	2.8	0.004	0.69	0.0	0.24	21.89	0.01	1.492	13.07	0.00	5.0	95.0	0.0	0.83	0.64	0.77	3.15	2.8	0.003	0.65	0.0	0.04	16.24	0.00	2.370	10.30	1.82	6.0	93.9	0.2	1.13	2.15	0.60	0.77	2.33	10414	1226	4	0	38	0	0	logfile

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