Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SH2	40477	2024-10-14	2023-04-13	3.74	3.89	3.81	3.9	0.006	1.20	0.0	0.06	13.35	0.01	2.321	14.58	0.35	4.8	95.2	0.0	-2.82	0.58	0.42	0.91	3.9	0.004	0.83	0.0	0.05	15.52	0.00	2.452	19.72	2.84	5.5	94.5	0.0	-1.88	1.22	0.64	0.50	1.07	18038	2254	12	0	0	0	0	logfile
✔	8SH9	40481	2024-10-13	2023-04-13	2.7	3.31	2.75	3.1	0.004	0.52	0.0	0.04	14.49	0.00	1.955	6.08	0.00	3.4	96.6	0.0	1.77	0.83	0.88	3.18	3.0	0.003	0.59	1.0	0.04	15.64	0.00	0.986	5.47	0.51	3.2	96.8	0.0	1.74	0.26	0.82	0.87	2.98	67197	8725	50	0	48	19	0	logfile
✔	8SHD	40484	2024-10-13	2023-04-13	2.9	3.43	2.96	3.2	0.004	0.54	0.0	0.04	13.80	0.00	1.928	6.69	0.00	3.3	96.7	0.0	1.61	0.84	0.88	3.07	3.2	0.004	0.59	0.0	0.04	15.43	0.00	0.929	6.08	1.01	3.3	96.7	0.0	1.64	0.29	0.84	0.90	2.77	66069	8588	49	0	48	19	0	logfile
✔	8SH3	40479	2024-10-11	2023-04-13	2.8	3.07	2.82	3.1	0.004	0.65	0.0	0.17	21.60	0.01	2.186	10.80	0.00	4.8	95.2	0.0	1.02	0.59	0.79	4.25	3.1	0.003	0.60	0.0	0.04	15.62	0.00	2.387	9.32	2.01	4.8	95.0	0.2	1.09	0.38	0.61	0.82	3.88	10386	1226	4	0	38	0	0	logfile
✔	8SGR	40465	2024-10-12	2023-04-13	2.84	3.51	2.98	3.3	0.006	0.61	0.0	0.04	11.94	0.00	2.143	5.61	0.64	2.0	98.0	0.0	2.16	0.80	0.78	4.42	3.4	0.004	0.51	0.0	0.04	13.91	0.00	2.565	4.63	0.24	2.6	97.4	0.0	2.52	0.93	0.78	0.88	3.85	12252	1572	8	0	4	0	0	logfile
✔	8J1P	35929	2024-10-12	2023-04-13	3.31	3.00	3.43	3.3	0.003	0.81	0.0	0.05	12.57	0.00	2.158	15.88	0.00	5.2	94.7	0.1	-1.52	0.79	0.70	0.78	3.3	0.003	0.72	0.0	0.04	15.59	0.00	2.487	11.61	1.83	5.0	94.9	0.1	-0.69	1.18	0.79	0.71	0.42	11523	1458	4	0	0	0	0	logfile
✔	8J1R	35931	2024-10-10	2023-04-13	3.52	3.54	3.52	3.4	0.004	0.57	0.0	0.04	12.84	0.00	2.200	14.16	6.09	4.7	95.2	0.1	0.26	0.79	0.74	1.50	3.3	0.003	0.66	0.0	0.04	14.99	0.00	2.494	10.99	3.04	3.6	96.4	0.0	0.29	1.16	0.79	0.73	0.55	6497	823	2	0	0	0	0	logfile
✔	8oRG	17123	2024-10-09	2023-04-13	2.3	2.70	2.18	2.6	0.010	1.26	0.0	0.08	11.92	0.01	2.462	0.00	0.00	2.4	97.6	0.0	-2.52	0.32	0.76	4.82	2.6	0.004	0.61	0.0	0.05	16.55	0.00	2.396	1.01	2.63	1.6	98.4	0.0	-2.90	1.13	0.37	0.82	4.32	3966	258	3	0	0	0	2025	logfile
✔	8SGT	40467	2024-10-10	2023-04-13	3.6	3.99	3.64	3.7	0.005	0.75	0.0	0.05	13.35	0.01	2.090	4.53	0.00	2.2	97.8	0.0	-1.14	0.57	0.67	1.72	3.7	0.008	0.74	0.0	0.05	15.65	0.01	2.128	11.83	2.22	4.0	96.0	0.0	0.38	1.49	0.59	0.76	1.68	7119	918	4	0	6	0	0	logfile
✔	8oRD	17120	2024-10-13	2023-04-13	3.9	4.04	3.89	4.1	0.005	0.92	0.0	0.05	17.82	0.01	2.109	19.32	0.58	2.3	97.7	0.0	-0.41	0.55	0.81	1.69	4.0	0.004	0.82	0.0	0.05	18.01	0.01	2.463	14.86	4.50	2.5	97.5	0.0	0.14	1.56	0.56	0.82	1.50	14590	1850	10	0	10	0	0	logfile
✔	8oRF	17122	2024-10-09	2023-04-13	2.5	2.71	2.32	2.7	0.010	1.27	0.0	0.07	11.76	0.01	2.508	0.00	0.00	5.1	94.9	0.0	-2.82	0.31	0.74	5.59	2.7	0.005	0.63	0.0	0.05	16.00	0.00	2.415	3.44	1.89	5.4	94.6	0.0	-3.53	1.09	0.38	0.82	5.36	4653	303	3	0	0	0	2382	logfile
✔	8SGW	40470	2024-10-11	2023-04-13	2.5	2.88	2.51	2.8	0.004	0.69	0.0	0.24	21.89	0.01	1.492	13.07	0.00	5.0	95.0	0.0	0.83	0.64	0.77	3.15	2.8	0.003	0.65	0.0	0.04	16.24	0.00	2.370	10.30	1.82	6.0	93.9	0.2	1.13	2.15	0.60	0.77	2.33	10414	1226	4	0	38	0	0	logfile
✔	8SHC	40483	2024-10-11	2023-04-13	3.0	3.12	2.90	3.2	0.005	0.70	0.0	0.17	21.90	0.01	2.197	6.87	0.19	5.9	94.1	0.0	1.04	0.67	0.78	2.59	3.2	0.003	0.61	0.0	0.04	16.95	0.01	2.368	5.03	2.49	5.7	94.3	0.0	1.45	0.41	0.67	0.82	2.61	10464	1226	4	0	40	0	0	logfile
✘	8SGS	40466	2024-10-12	2023-04-13	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11720	1524	8	0	8	0	0	logfile
✔	8SGV	40469	2024-10-14	2023-04-13	2.58	3.25	2.64	3.1	0.007	0.80	0.0	0.05	9.84	0.00	2.260	3.91	0.23	3.4	96.6	0.0	0.82	0.87	0.86	6.07	3.1	0.003	0.57	0.0	0.04	13.03	0.00	2.524	4.56	0.47	3.2	96.8	0.0	0.92	0.94	0.79	0.89	6.16	16409	1993	8	0	8	0	0	logfile
✔	8SH7	40480	2024-10-10	2023-04-13	2.8	3.11	2.79	3.1	0.008	0.92	0.0	0.06	14.91	0.01	1.939	2.16	0.00	2.7	97.3	0.0	-1.35	0.54	0.89	3.74	3.1	0.003	0.59	0.0	0.04	17.10	0.00	2.101	3.36	1.77	1.5	98.5	0.0	0.69	1.49	0.55	0.88	2.90	6819	862	4	1	2	0	0	logfile
✔	8SHA	40482	2024-10-13	2023-04-13	3.0	3.49	3.11	3.3	0.006	0.60	0.0	0.04	14.84	0.00	1.897	7.05	0.00	4.1	95.9	0.0	1.34	0.84	0.89	2.68	3.3	0.004	0.67	1.0	0.04	15.97	0.00	0.882	6.36	0.99	3.7	96.3	0.0	1.37	1.08	0.83	0.89	2.49	67155	8717	50	0	48	19	0	logfile
✔	8SHE	40485	2024-10-13	2023-04-13	2.8	3.49	2.89	3.2	0.005	0.56	0.0	0.04	14.08	0.00	1.875	6.81	0.00	3.6	96.4	0.0	1.64	0.86	0.89	2.88	3.2	0.005	0.62	0.0	0.04	15.31	0.00	1.342	5.67	0.87	3.5	96.5	0.0	1.74	0.25	0.84	0.87	2.56	66179	8601	49	0	48	19	0	logfile
✔	8SGC	40454	2024-10-13	2023-04-12	2.9	3.49	2.93	3.2	0.004	0.51	0.0	0.04	14.02	0.00	1.975	7.01	0.00	3.2	96.8	0.0	1.91	0.85	0.87	2.55	3.3	0.003	0.61	0.0	0.04	15.48	0.00	1.312	6.14	0.75	3.2	96.8	0.0	1.66	2.38	0.84	0.88	2.43	66737	8668	50	0	48	19	0	logfile
✘	8SG9	40453	2024-10-13	2023-04-12	2.9	3.49	2.92	3.2	0.004	0.53	0.0	0.04	13.77	0.00	1.928	6.71	0.00	3.1	96.9	0.0	1.67	0.85	0.88	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65583	8522	49	0	48	19	0	logfile

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