Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SGL	40461	2024-10-13	2023-04-12	2.9	3.44	2.97	3.2	0.005	0.55	0.0	0.04	14.21	0.00	1.932	6.95	0.00	3.5	96.5	0.0	1.62	0.84	0.89	2.74	3.2	0.004	0.60	0.0	0.04	15.58	0.00	1.506	6.14	0.75	3.4	96.6	0.0	1.64	1.09	0.82	0.88	2.52	67432	8762	49	0	48	19	0	logfile
✔	8oR2	17115	2024-10-14	2023-04-12	3.2	2.36	3.12	3.0	0.007	0.76	13.0	0.06	14.65	0.00	1.805	7.23	1.24	3.3	96.7	0.0	1.99	0.72	0.66	0.70	2.0	0.004	0.68	0.0	0.04	16.73	0.00	2.031	6.57	2.90	3.2	96.8	0.0	0.98	1.24	0.78	0.75	1.66	16558	2072	5	0	3	0	0	logfile
✔	8J1A	35915	2024-10-10	2023-04-12	3.24	3.58	3.34	3.6	0.004	0.62	0.0	0.04	15.32	0.00	1.976	5.61	0.63	3.8	96.2	0.0	0.36	0.61	0.82	2.87	3.6	0.003	0.56	0.0	0.04	16.04	0.00	2.527	5.10	1.99	3.2	96.8	0.0	0.38	0.39	0.56	0.81	2.69	8845	1137	5	0	0	0	0	logfile
✔	8oR0	17114	2024-10-14	2023-04-12	3.1	2.37	2.99	1.7	0.004	0.64	1.0	0.04	15.61	0.00	1.149	6.33	0.51	3.9	96.1	0.0	0.59	0.64	0.56	0.20	1.5	0.003	0.71	0.0	0.04	16.63	0.00	2.062	10.28	2.41	4.2	95.8	0.0	0.06	1.27	0.69	0.64	0.70	18823	2489	8	0	3	0	0	logfile
✔	8J1E	35920	2024-10-10	2023-04-12	3.84	3.91	3.88	3.9	0.004	0.79	0.0	0.05	14.02	0.01	2.310	5.99	0.00	1.9	98.1	0.0	0.90	0.70	0.82	2.42	3.9	0.003	0.59	0.0	0.04	15.37	0.00	2.617	4.04	0.77	2.0	98.0	0.0	1.54	0.92	0.70	0.82	2.19	7590	954	6	0	9	0	0	logfile
✔	8SGJ	40457	2024-10-10	2023-04-12	3.1	3.60	3.20	3.5	0.004	0.70	0.0	0.05	12.73	0.01	1.994	5.39	0.00	2.6	97.4	0.0	-0.02	0.64	0.84	3.47	3.5	0.003	0.55	0.0	0.04	14.94	0.00	2.213	4.60	2.06	2.1	97.8	0.1	1.21	0.97	0.55	0.81	3.09	7667	982	4	0	9	1	0	logfile
✔	8SGQ	40464	2024-10-12	2023-04-12	3.7	4.22	3.84	3.6	0.003	0.64	0.0	0.04	14.79	0.00	2.031	16.53	0.00	5.3	94.6	0.0	0.13	0.80	0.73	0.49	3.7	0.004	0.74	0.0	0.04	16.33	0.00	2.348	16.21	1.11	5.8	94.2	0.0	-0.18	0.43	0.81	0.76	0.41	62187	8093	32	0	16	0	0	logfile
✔	8oQi	17111	2024-10-09	2023-04-12	3.1	3.09	2.34	3.3	0.013	2.01	0.0	0.11	18.29	0.01	2.465	9.18	2.63	0.0	100.0	0.0	0.22	0.51	0.84	3.31	3.3	0.003	0.58	0.0	0.05	17.02	0.00	2.641	3.75	4.21	2.2	97.8	0.0	-1.72	1.22	0.52	0.87	4.11	3810	560	10	0	0	0	0	logfile
✘	8SG9	40453	2024-10-13	2023-04-12	2.9	3.49	2.92	3.2	0.004	0.53	0.0	0.04	13.77	0.00	1.928	6.71	0.00	3.1	96.9	0.0	1.67	0.85	0.88	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65583	8522	49	0	48	19	0	logfile
✔	8SGC	40454	2024-10-13	2023-04-12	2.9	3.49	2.93	3.2	0.004	0.51	0.0	0.04	14.02	0.00	1.975	7.01	0.00	3.2	96.8	0.0	1.91	0.85	0.87	2.55	3.3	0.003	0.61	0.0	0.04	15.48	0.00	1.312	6.14	0.75	3.2	96.8	0.0	1.66	2.38	0.84	0.88	2.43	66737	8668	50	0	48	19	0	logfile
✔	8SGK	40458	2024-10-10	2023-04-12	3.7	3.91	3.67	3.8	0.002	0.56	0.0	0.04	17.41	0.00	2.269	9.42	0.26	0.4	99.6	0.0	0.76	0.81	0.78	0.79	3.8	0.004	0.95	1.0	0.05	17.74	0.00	2.303	9.16	2.71	1.1	98.9	0.0	1.11	0.92	0.82	0.79	1.07	7622	986	4	0	2	0	0	logfile
✔	8SGP	40463	2024-10-12	2023-04-12	2.69	3.37	2.71	3.2	0.004	0.51	0.0	0.04	11.58	0.00	2.171	4.08	1.33	1.8	98.2	0.0	2.13	0.82	0.80	5.29	3.2	0.002	0.47	0.0	0.04	13.86	0.00	2.599	5.32	1.58	2.1	97.9	0.0	2.22	0.47	0.80	0.90	4.65	12100	1540	8	0	4	0	0	logfile
✔	8SFJ	40443	2024-10-11	2023-04-11	3.6	4.77	3.67	4.0	0.005	1.19	0.0	0.07	22.09	0.01	2.182	7.41	0.22	2.3	97.7	0.0	-0.53	0.87	0.72	1.68	4.0	0.003	0.66	0.0	0.04	22.33	0.00	2.493	9.98	2.02	2.6	97.4	0.0	0.92	0.98	0.92	0.86	1.80	10207	1001	4	97	0	0	0	logfile
✔	8oQA	17110	2024-10-13	2023-04-11	2.9	2.48	2.90	2.9	0.003	0.59	0.0	0.06	10.52	0.00	2.070	3.88	0.61	0.9	99.1	0.0	2.11	0.68	0.85	4.55	2.8	0.004	0.88	1.0	0.05	15.97	0.00	2.052	3.47	3.03	1.2	98.8	0.0	1.28	1.72	0.67	0.86	4.33	13762	1650	10	0	36	0	0	logfile
✔	8SG4	40451	2024-10-12	2023-04-11	3.11	3.67	3.27	3.6	0.004	0.66	0.0	0.04	12.03	0.01	2.302	0.80	0.00	1.9	98.1	0.0	0.44	0.61	0.78	2.80	3.6	0.003	0.53	0.0	0.04	14.17	0.00	2.395	4.18	0.70	2.3	97.7	0.0	2.05	1.59	0.64	0.81	2.22	11715	1469	1	0	0	0	0	logfile
✔	8J0N	35906	2024-10-14	2023-04-11	3.47	4.45	3.63	7.0	0.007	0.83	0.0	0.04	18.25	0.01	2.136	9.82	0.75	8.2	91.5	0.3	-1.04	0.53	0.23	0.17	4.1	0.007	1.19	1.0	0.06	17.91	0.01	2.238	26.01	3.30	9.8	89.8	0.4	-2.01	2.08	0.73	0.72	0.44	18475	2301	12	0	9	0	0	logfile
✔	8SG1	40450	2024-10-11	2023-04-11	2.94	3.40	3.06	3.4	0.005	0.89	2.0	0.06	13.73	0.01	2.235	6.41	1.78	2.3	97.7	0.0	0.06	0.52	0.80	3.35	3.4	0.002	0.58	0.0	0.04	15.06	0.00	2.588	4.31	2.20	2.8	97.2	0.0	0.71	0.36	0.54	0.81	2.97	8846	1127	7	0	3	0	0	logfile
✘	8oQ8	17108	2024-10-13	2023-04-11	2.9	2.64	2.80	2.8	0.014	0.97	0.0	0.08	11.03	0.01	2.175	2.36	0.84	2.3	97.7	0.0	1.82	0.64	0.87	4.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14432	1680	15	0	46	132	0	logfile
✔	8SFF	40440	2024-10-13	2023-04-11	3.2	3.48	3.08	3.3	0.004	0.55	0.0	0.04	14.50	0.00	1.599	7.13	0.00	3.2	96.8	0.0	1.72	0.84	0.89	2.47	3.3	0.004	0.58	0.0	0.04	15.53	0.00	1.206	5.96	0.72	3.5	96.5	0.0	1.80	0.26	0.83	0.89	2.30	66750	8667	49	0	48	19	0	logfile
✔	8oQ7	17107	2024-10-13	2023-04-11	2.2	2.13	2.08	2.2	0.007	0.87	0.0	0.09	10.81	0.01	2.290	1.40	0.33	1.5	98.5	0.0	2.27	0.73	0.85	5.65	2.1	0.005	0.74	0.0	0.05	14.30	0.01	2.604	1.40	1.79	2.0	98.0	0.0	1.73	1.01	0.73	0.87	5.84	14702	1680	15	0	57	505	0	logfile

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