The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8iZ7 | 35834 | 2024-10-11 | 2023-04-06 | 3.8 | 4.27 | 3.88 | 4.1 | 0.004 | 0.77 | 0.0 | 0.04 | 13.69 | 0.00 | 2.220 | 6.53 | 0.00 | 5.2 | 94.8 | 0.0 | -4.30 | 0.58 | 0.67 | 0.95 | 4.1 | 0.002 | 0.64 | 0.0 | 0.04 | 15.91 | 0.00 | 2.579 | 4.22 | 1.78 | 6.3 | 93.7 | 0.0 | -1.19 | 1.28 | 0.67 | 0.80 | 0.85 | 9830 | 1229 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8iYW | 35831 | 2024-10-10 | 2023-04-06 | 3.45 | 3.86 | 3.54 | 3.8 | 0.005 | 0.84 | 0.0 | 0.05 | 12.73 | 0.01 | 2.252 | 5.71 | 1.45 | 3.3 | 96.7 | 0.0 | 0.09 | 0.68 | 0.79 | 3.77 | 3.9 | 0.002 | 0.61 | 0.0 | 0.04 | 13.93 | 0.00 | 2.461 | 3.74 | 2.32 | 2.6 | 97.4 | 0.0 | 0.95 | 0.38 | 0.63 | 0.75 | 3.10 | 7849 | 1118 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8oP9 | 17045 | 2024-10-13 | 2023-04-06 | 3.36 | 3.32 | 3.35 | 3.6 | 0.003 | 0.55 | 0.0 | 0.04 | 8.96 | 0.00 | 2.012 | 3.97 | 0.34 | 0.3 | 99.7 | 0.0 | 2.02 | 0.61 | 0.78 | 2.96 | 3.6 | 0.003 | 0.58 | 0.0 | 0.04 | 13.65 | 0.00 | 2.452 | 3.16 | 2.76 | 1.8 | 98.2 | 0.0 | 1.08 | 1.77 | 0.64 | 0.84 | 3.90 | 13811 | 1660 | 15 | 0 | 36 | 10 | 0 | logfile |
✔ | 8ooY | 17033 | 2024-10-10 | 2023-04-06 | 4.0 | 3.79 | 3.92 | 3.7 | 0.004 | 0.68 | 0.0 | 0.04 | 20.02 | 0.00 | 2.016 | 12.57 | 0.79 | 5.1 | 94.9 | 0.0 | -0.97 | 0.81 | 0.77 | — | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 21.22 | 0.00 | 2.099 | 9.72 | 1.77 | 4.5 | 95.5 | 0.0 | 0.10 | 0.45 | 0.81 | 0.77 | — | 5828 | 604 | 5 | 51 | 1 | 0 | 0 | logfile |
✔ | 8SDA | 40350 | 2024-10-10 | 2023-04-06 | 3.32 | 3.41 | 3.16 | 3.4 | 0.008 | 1.11 | 0.0 | 0.04 | 15.99 | 0.00 | 2.225 | 15.46 | 0.00 | 2.7 | 97.3 | 0.0 | 1.62 | 0.63 | 0.81 | 2.02 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 16.06 | 0.00 | 2.557 | 7.63 | 1.63 | 2.0 | 98.0 | 0.0 | 3.09 | 0.95 | 0.65 | 0.85 | 1.67 | 7414 | 939 | 8 | 0 | 19 | 0 | 0 | logfile |
✔ | 8oP2 | 17038 | 2024-10-12 | 2023-04-06 | 2.8 | 2.98 | 2.90 | 3.0 | 0.017 | 1.06 | 0.0 | 0.05 | 16.53 | 0.00 | 2.165 | 8.68 | 5.19 | 3.0 | 97.0 | 0.0 | 0.82 | 0.75 | 0.83 | 2.44 | 3.0 | 0.012 | 0.69 | 0.0 | 0.04 | 17.71 | 0.00 | 2.426 | 5.47 | 2.05 | 2.6 | 97.4 | 0.0 | 1.81 | 1.24 | 0.75 | 0.84 | 2.38 | 60280 | 7380 | 22 | 140 | 0 | 0 | 0 | logfile |
✔ | 8oP1 | 17035 | 2024-10-13 | 2023-04-06 | 3.5 | 3.75 | 3.42 | 3.7 | 0.006 | 0.75 | 0.0 | 0.05 | 15.51 | 0.00 | 2.154 | 12.80 | 0.00 | 6.3 | 93.7 | 0.0 | -0.39 | 0.65 | 0.79 | 1.94 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 17.12 | 0.00 | 2.357 | 8.44 | 2.03 | 3.3 | 96.7 | 0.0 | 1.04 | 0.44 | 0.64 | 0.77 | 1.27 | 15415 | 1890 | 10 | 35 | 0 | 0 | 0 | logfile |
✔ | 8SCZ | 40347 | 2024-10-10 | 2023-04-06 | 3.4 | 3.48 | 3.27 | 3.5 | 0.004 | 0.82 | 0.0 | 0.04 | 19.41 | 0.01 | 1.836 | 11.63 | 0.35 | 6.2 | 93.6 | 0.2 | -2.21 | 0.60 | 0.66 | 1.04 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 19.62 | 0.00 | 2.525 | 12.12 | 2.63 | 4.9 | 95.1 | 0.0 | 0.14 | 1.14 | 0.61 | 0.69 | 1.46 | 6411 | 635 | 3 | 59 | 2 | 0 | 0 | logfile |
✘ | 8SD3 | 40349 | 2024-10-13 | 2023-04-06 | 2.95 | 3.05 | 3.06 | 3.2 | 0.010 | 1.08 | 0.0 | 0.04 | 16.42 | 0.01 | 2.187 | 9.06 | 0.00 | 1.3 | 98.7 | 0.0 | 1.86 | 0.54 | 0.76 | 3.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14656 | 948 | 8 | 0 | 28 | 0 | 6824 | logfile |
✔ | 8ooU | 17031 | 2024-10-12 | 2023-04-06 | 2.9 | 3.00 | 2.93 | 2.9 | 0.021 | 1.03 | 0.0 | 0.04 | 14.49 | 0.00 | 2.203 | 9.12 | 0.00 | 2.4 | 97.6 | 0.0 | 0.71 | 0.80 | 0.85 | 3.26 | 2.9 | 0.003 | 0.54 | 0.0 | 0.04 | 16.45 | 0.00 | 2.557 | 7.40 | 1.80 | 1.4 | 98.6 | 0.0 | 1.72 | 0.36 | 0.82 | 0.87 | 2.78 | 61800 | 7560 | 22 | 140 | 0 | 0 | 0 | logfile |
✔ | 8iYQ | 35827 | 2024-10-12 | 2023-04-05 | 2.46 | 2.22 | 2.69 | 2.0 | 0.003 | 0.52 | 0.0 | 0.04 | 18.29 | 0.00 | 2.305 | 4.17 | 0.54 | 4.4 | 95.6 | 0.0 | 0.39 | 0.70 | 0.73 | 3.86 | 2.0 | 0.005 | 0.58 | 0.0 | 0.04 | 19.19 | 0.00 | 2.449 | 4.70 | 1.54 | 4.6 | 95.3 | 0.1 | 0.03 | 0.41 | 0.83 | 0.83 | 3.70 | 13081 | 1198 | 4 | 147 | 0 | 0 | 0 | logfile |
✔ | 8SCX | 40346 | 2024-10-10 | 2023-04-05 | 2.7 | 3.26 | 2.76 | 3.1 | 0.006 | 0.70 | 0.0 | 0.04 | 14.97 | 0.00 | 2.240 | 5.56 | 0.18 | 1.9 | 98.1 | 0.0 | 1.27 | 0.69 | 0.85 | 4.05 | 3.1 | 0.003 | 0.57 | 0.0 | 0.04 | 16.53 | 0.00 | 2.398 | 5.30 | 1.97 | 2.1 | 97.9 | 0.0 | 2.51 | 0.42 | 0.64 | 0.83 | 3.12 | 5753 | 760 | 7 | 0 | 2 | 0 | 0 | logfile |
✔ | 8ooF | 17012 | 2024-10-09 | 2023-04-05 | 2.9 | 1.91 | 3.05 | 2.8 | 0.004 | 0.71 | 0.0 | 0.05 | 13.65 | 0.01 | 2.043 | 2.60 | 0.00 | 2.9 | 97.1 | 0.0 | -0.80 | 0.84 | 0.83 | 4.92 | 2.8 | 0.003 | 0.64 | 0.0 | 0.04 | 16.34 | 0.00 | 1.995 | 5.08 | 2.36 | 3.1 | 96.9 | 0.0 | 0.59 | 1.96 | 0.85 | 0.84 | 4.32 | 4479 | 556 | 3 | 0 | 2 | 0 | 0 | logfile |
✔ | 8ooS | 17027 | 2024-10-12 | 2023-04-05 | 3.29 | 1.76 | 3.20 | 3.1 | 0.007 | 1.29 | 0.0 | 0.05 | 24.79 | 0.01 | 1.879 | 4.57 | 0.00 | 3.2 | 96.8 | 0.0 | -2.38 | 0.71 | 0.73 | 2.66 | 3.1 | 0.004 | 0.79 | 0.0 | 0.04 | 25.72 | 0.00 | 1.061 | 8.30 | 1.79 | 3.1 | 96.9 | 0.0 | 0.87 | 1.59 | 0.74 | 0.74 | 1.64 | 12307 | 966 | 10 | 217 | 3 | 0 | 0 | logfile |
✔ | 8ooT | 17028 | 2024-10-09 | 2023-04-05 | 2.85 | 3.10 | 2.87 | 2.8 | 0.003 | 0.64 | 0.0 | 0.05 | 13.62 | 0.01 | 1.743 | 2.03 | 0.00 | 3.5 | 96.5 | 0.0 | -0.61 | 0.89 | 0.87 | 5.43 | 2.8 | 0.004 | 0.67 | 0.0 | 0.04 | 15.22 | 0.00 | 1.953 | 4.97 | 1.93 | 2.4 | 97.6 | 0.0 | 0.81 | 0.76 | 0.89 | 0.88 | 4.40 | 4479 | 556 | 3 | 0 | 2 | 0 | 0 | logfile |
✔ | 8SC2 | 40335 | 2024-10-09 | 2023-04-04 | 3.36 | 3.56 | 3.32 | 3.5 | 0.003 | 0.55 | 0.0 | 0.04 | 8.52 | 0.00 | 2.258 | 3.93 | 0.00 | 1.3 | 98.7 | 0.0 | 2.79 | 0.58 | 0.81 | 1.97 | 3.5 | 0.003 | 0.66 | 0.0 | 0.04 | 13.56 | 0.00 | 2.537 | 6.74 | 2.12 | 2.0 | 98.0 | 0.0 | 2.70 | 1.03 | 0.58 | 0.82 | 1.19 | 3534 | 453 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8oo9 | 17007 | 2024-10-09 | 2023-04-04 | 3.2 | 2.32 | 3.17 | 3.1 | 0.010 | 1.70 | 0.0 | 0.06 | 20.61 | 0.01 | 1.879 | 4.84 | 0.00 | 2.3 | 97.7 | 0.0 | -2.21 | 0.81 | 0.78 | 3.72 | 3.1 | 0.004 | 1.04 | 0.0 | 0.04 | 22.24 | 0.00 | 1.232 | 6.46 | 1.76 | 2.6 | 97.4 | 0.0 | -0.67 | 1.37 | 0.83 | 0.81 | 2.20 | 4516 | 439 | 4 | 42 | 3 | 0 | 0 | logfile |
✔ | 8iYD | 35818 | 2024-10-10 | 2023-04-04 | 3.1 | 3.64 | 3.35 | 3.5 | 0.004 | 0.81 | 1.0 | 0.05 | 17.22 | 0.01 | 2.090 | 19.17 | 0.98 | 9.5 | 89.8 | 0.8 | -2.30 | 0.73 | 0.77 | 2.04 | 3.5 | 0.004 | 0.75 | 1.0 | 0.05 | 17.32 | 0.01 | 2.285 | 11.50 | 6.61 | 7.0 | 92.6 | 0.4 | -1.76 | 0.32 | 0.73 | 0.78 | 1.86 | 49344 | 6639 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 8iY5 | 35814 | 2024-10-11 | 2023-04-04 | 2.8 | 2.81 | 2.81 | 3.0 | 0.003 | 0.68 | 0.0 | 0.04 | 13.17 | 0.00 | 2.166 | 11.68 | 0.00 | 3.9 | 95.9 | 0.3 | -0.34 | 0.47 | 0.57 | 1.96 | 3.0 | 0.003 | 0.74 | 0.0 | 0.05 | 15.64 | 0.00 | 2.209 | 9.76 | 1.89 | 4.1 | 95.6 | 0.3 | 0.06 | 0.49 | 0.46 | 0.65 | 1.91 | 9176 | 1177 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8SC6 | 40339 | 2024-10-09 | 2023-04-04 | 3.13 | 3.36 | 3.12 | 3.4 | 0.003 | 0.50 | 0.0 | 0.03 | 8.71 | 0.00 | 2.273 | 3.28 | 0.81 | 0.9 | 99.1 | 0.0 | 2.80 | 0.58 | 0.82 | 2.08 | 3.4 | 0.002 | 0.48 | 0.0 | 0.04 | 12.50 | 0.00 | 2.625 | 3.28 | 2.43 | 0.9 | 99.1 | 0.0 | 3.08 | 0.47 | 0.53 | 0.80 | 2.18 | 3479 | 447 | 2 | 0 | 1 | 0 | 0 | logfile |