Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SC4	40337	2024-10-09	2023-04-04	3.46	3.65	3.43	3.6	0.004	0.68	0.0	0.04	10.98	0.03	2.296	2.80	0.00	2.9	97.1	0.0	-0.96	0.57	0.77	2.57	3.6	0.003	0.77	0.0	0.04	15.26	0.00	2.536	10.08	3.42	2.2	97.8	0.0	2.66	1.20	0.57	0.79	2.93	3544	456	2	0	1	0	0	logfile
✔	8iY5	35814	2024-10-11	2023-04-04	2.8	2.81	2.81	3.0	0.003	0.68	0.0	0.04	13.17	0.00	2.166	11.68	0.00	3.9	95.9	0.3	-0.34	0.47	0.57	1.96	3.0	0.003	0.74	0.0	0.05	15.64	0.00	2.209	9.76	1.89	4.1	95.6	0.3	0.06	0.49	0.46	0.65	1.91	9176	1177	6	0	0	0	0	logfile
✔	8SC2	40335	2024-10-09	2023-04-04	3.36	3.56	3.32	3.5	0.003	0.55	0.0	0.04	8.52	0.00	2.258	3.93	0.00	1.3	98.7	0.0	2.79	0.58	0.81	1.97	3.5	0.003	0.66	0.0	0.04	13.56	0.00	2.537	6.74	2.12	2.0	98.0	0.0	2.70	1.03	0.58	0.82	1.19	3534	453	2	0	1	0	0	logfile
✔	8SC6	40339	2024-10-09	2023-04-04	3.13	3.36	3.12	3.4	0.003	0.50	0.0	0.03	8.71	0.00	2.273	3.28	0.81	0.9	99.1	0.0	2.80	0.58	0.82	2.08	3.4	0.002	0.48	0.0	0.04	12.50	0.00	2.625	3.28	2.43	0.9	99.1	0.0	3.08	0.47	0.53	0.80	2.18	3479	447	2	0	1	0	0	logfile
✔	8iY6	35815	2024-10-09	2023-04-04	3.13	3.04	3.19	3.1	0.003	0.55	0.0	0.04	12.05	0.00	2.168	6.91	0.00	2.3	97.7	0.0	1.84	0.42	0.61	2.08	3.1	0.003	0.65	0.0	0.04	14.66	0.00	2.530	9.47	1.77	1.3	98.7	0.0	2.40	0.53	0.42	0.63	1.34	2495	314	2	0	0	0	0	logfile
✔	8ooA	17008	2024-10-10	2023-04-04	3.18	1.83	3.09	2.8	0.008	1.08	0.0	0.06	27.96	0.01	2.299	5.05	0.00	1.5	98.5	0.0	-2.10	0.75	0.76	3.22	2.8	0.004	0.60	0.0	0.04	28.26	0.00	2.558	8.11	2.03	1.2	98.8	0.0	2.01	1.03	0.77	0.76	2.63	8405	529	8	204	0	0	0	logfile
✔	8iYH	35822	2024-10-10	2023-04-04	3.3	3.51	3.29	3.5	0.004	0.72	0.0	0.05	13.48	0.01	2.204	5.25	1.08	2.3	97.7	0.0	0.53	0.69	0.80	3.40	3.5	0.004	0.59	0.0	0.04	14.78	0.00	2.518	4.20	4.33	2.3	97.7	0.0	0.57	0.39	0.69	0.82	3.38	8035	1119	6	0	1	0	0	logfile
✔	8iY9	35817	2024-10-10	2023-04-04	3.37	3.65	3.39	3.7	0.005	0.90	1.0	0.05	12.94	0.01	2.123	3.88	1.07	3.1	96.9	0.0	-0.48	0.70	0.79	3.58	3.7	0.003	0.60	0.0	0.04	14.29	0.00	2.536	4.40	2.93	2.3	97.7	0.0	0.51	0.44	0.70	0.82	3.01	8121	1130	6	0	1	0	0	logfile
✔	8SBD	40305	2024-10-10	2023-04-03	3.2	3.26	4.77	3.7	0.003	0.73	0.0	0.04	12.98	0.00	2.028	18.83	5.97	6.2	93.8	0.0	-4.19	0.70	0.71	2.96	3.7	0.004	0.71	0.0	0.05	15.68	0.00	2.354	22.44	3.92	12.7	87.3	0.0	-5.30	0.74	0.72	0.74	3.76	8864	584	32	0	0	0	4280	logfile
✔	8SBB	40303	2024-10-09	2023-04-03	3.59	4.04	3.46	3.9	0.016	1.33	0.0	0.07	15.68	0.01	2.146	19.11	3.99	14.9	85.1	0.0	-5.32	0.64	0.80	2.32	3.9	0.003	0.74	0.0	0.04	16.43	0.01	2.177	5.96	2.58	5.5	94.5	0.0	-0.88	1.30	0.65	0.81	2.03	4049	499	3	0	3	0	0	logfile
✔	8oNT	17000	2024-10-09	2023-04-03	3.66	3.95	3.45	3.9	0.006	0.67	0.0	0.04	16.92	0.01	1.908	33.89	0.87	6.7	93.3	0.0	1.63	0.63	0.79	0.81	3.9	0.003	0.59	0.0	0.04	15.90	0.00	2.525	7.19	3.04	5.6	94.4	0.0	1.84	0.36	0.63	0.77	1.08	4316	558	3	0	1	1	0	logfile
✔	8SAY	40284	2024-10-15	2023-04-02	3.4	3.65	3.40	3.6	0.006	1.03	0.0	0.06	16.67	0.01	1.984	3.04	0.00	6.5	93.2	0.3	-2.14	0.70	0.74	2.38	3.6	0.006	0.86	0.0	0.05	16.09	0.00	2.478	9.87	3.65	7.4	92.3	0.3	-1.66	1.38	0.72	0.78	2.11	19902	2459	24	0	64	0	0	logfile
✘	8SAX	40283	2024-10-15	2023-04-02	4.0	4.49	4.01	4.3	0.004	0.65	0.0	0.06	13.45	0.00	2.035	2.64	2.12	2.7	97.0	0.4	-0.49	0.77	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19860	2496	24	0	51	0	0	logfile
✔	8SAZ	40285	2024-10-15	2023-04-02	3.9	4.14	3.89	4.1	0.006	0.98	0.0	0.05	17.30	0.01	2.168	2.47	0.14	5.4	94.5	0.1	-1.89	0.72	0.76	2.12	4.1	0.003	0.78	0.0	0.05	15.55	0.00	2.473	6.90	2.81	4.4	95.3	0.2	-0.85	1.44	0.76	0.81	2.20	19960	2466	24	0	65	0	0	logfile
✘	8SB4	40290	2024-10-15	2023-04-02	3.6	3.84	3.60	3.8	0.006	0.93	0.0	0.05	16.32	0.01	2.071	2.69	0.00	4.8	94.8	0.3	-1.55	0.69	0.76	2.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20041	2490	24	0	56	0	0	logfile
✔	8SAU	40280	2024-10-15	2023-04-02	3.3	3.58	3.36	3.5	0.006	0.99	0.0	0.05	16.97	0.01	2.063	3.23	0.05	7.2	92.5	0.3	-2.22	0.69	0.74	2.37	3.6	0.003	0.73	0.0	0.05	16.10	0.00	2.362	6.35	3.10	4.7	95.2	0.2	-1.22	0.84	0.71	0.79	1.92	19884	2466	24	0	57	0	0	logfile
✔	8SB0	40286	2024-10-15	2023-04-02	4.2	4.27	3.94	4.2	0.006	0.95	0.0	0.05	15.00	0.01	2.050	2.37	0.05	6.4	93.3	0.2	-1.76	0.73	0.77	—	4.2	0.006	0.80	0.0	0.05	14.03	0.01	2.404	8.34	0.00	7.5	92.3	0.2	-1.67	1.26	0.74	0.79	—	19741	2445	24	0	57	0	0	logfile
✔	8SB1	40287	2024-10-15	2023-04-02	4.3	4.23	4.16	4.2	0.007	1.00	0.0	0.05	16.34	0.01	2.035	3.18	0.00	7.1	92.7	0.2	-2.33	0.70	0.76	—	4.2	0.003	0.74	0.0	0.05	13.76	0.00	2.441	8.76	0.05	5.3	94.5	0.2	-1.83	0.55	0.70	0.76	—	19979	2466	24	0	67	0	0	logfile
✔	8iXL	35795	2024-10-11	2023-04-01	3.5	3.61	3.45	3.6	0.012	1.48	0.0	0.10	11.65	0.00	2.568	2.07	0.00	0.4	99.6	0.0	2.40	0.71	0.84	1.08	3.6	0.003	0.46	0.0	0.04	15.97	0.00	2.582	5.21	2.81	0.5	99.5	0.0	5.61	1.12	0.68	0.84	1.00	10970	1455	35	0	0	0	0	logfile
✔	8SAL	40273	2024-10-14	2023-04-01	4.9	5.54	4.74	5.0	0.005	0.89	0.0	0.05	13.67	0.01	2.065	4.56	0.00	8.4	91.4	0.1	-2.31	0.76	0.70	—	5.0	0.003	0.80	0.0	0.05	13.32	0.01	2.365	16.56	0.00	8.0	91.9	0.1	-1.88	2.47	0.79	0.77	—	18435	2343	12	0	0	0	0	logfile

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