Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9B4F	44179	2024-10-09	2024-03-20	3.27	3.55	3.32	3.6	0.003	0.57	2.0	0.04	12.09	0.00	2.032	7.44	1.68	9.1	90.9	0.0	-2.07	0.58	0.80	3.31	3.6	0.002	0.52	0.0	0.04	14.26	0.00	2.565	4.12	2.52	7.1	92.9	0.0	1.27	0.84	0.51	0.78	3.02	5612	670	4	0	2	0	0	logfile
✔	9B3T	44155	2024-10-14	2024-03-20	3.53	4.31	3.67	4.1	0.003	0.62	0.0	0.04	18.61	0.00	2.215	11.95	2.81	3.3	96.7	0.0	0.30	0.83	0.76	1.34	4.1	0.003	0.75	0.0	0.04	18.54	0.00	2.337	11.19	3.30	3.2	96.8	0.0	2.13	1.50	0.84	0.82	1.05	16389	2049	8	0	0	0	0	logfile
✘	9EQ5	19897	2024-10-13	2024-03-20	2.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15796	2052	8	0	0	0	0	logfile
✔	8YQQ	39502	2024-10-09	2024-03-19	3.95	2.96	3.87	3.4	0.008	1.28	0.0	0.07	17.14	0.04	1.447	16.88	8.03	9.9	87.3	2.8	-3.12	0.87	0.83	2.44	3.4	0.003	0.71	0.0	0.05	15.59	0.00	2.017	7.39	2.97	6.2	93.8	0.0	-1.41	0.96	0.87	0.83	2.52	5141	649	4	0	6	0	0	logfile
✔	9B34	44125	2024-10-09	2024-03-18	3.58	3.87	3.58	3.9	0.007	1.47	0.0	0.08	12.86	0.01	2.121	8.00	0.49	23.6	74.5	1.9	-5.95	0.68	0.68	1.73	3.8	0.006	1.49	1.0	0.06	16.83	0.01	2.041	20.49	6.17	23.0	76.0	1.1	-4.29	2.01	0.72	0.73	0.92	3619	474	4	0	4	0	0	logfile
✔	9B35	44128	2024-10-13	2024-03-18	3.4	3.76	3.53	3.7	0.008	1.24	0.0	0.06	10.75	0.01	2.030	5.09	0.65	11.7	87.4	0.9	-5.51	0.68	0.81	3.08	3.7	0.003	0.75	0.0	0.04	14.52	0.00	2.455	9.58	1.74	10.8	89.1	0.1	-0.74	1.59	0.67	0.81	1.89	14132	1780	8	0	0	0	0	logfile
✔	9B33	44124	2024-10-09	2024-03-18	4.07	4.25	4.00	4.2	0.007	1.56	0.0	0.08	13.12	0.01	2.141	8.98	0.49	23.2	75.3	1.5	-6.09	0.63	0.62	—	4.1	0.004	1.00	0.0	0.05	12.87	0.01	2.033	18.94	0.00	22.1	77.0	0.9	-4.65	1.21	0.69	0.69	—	3619	474	4	0	4	0	0	logfile
✔	9EoG	19854	2024-10-09	2024-03-14	3.0	3.00	2.79	3.2	0.009	1.63	6.0	0.10	12.85	0.01	2.445	5.03	4.48	6.7	93.3	0.0	-4.10	0.39	0.90	4.14	3.2	0.006	0.82	0.0	0.05	15.52	0.00	2.554	9.64	1.00	5.1	94.9	0.0	-1.95	1.09	0.37	0.88	3.73	3522	462	6	0	0	0	0	logfile
✔	9Eo4	19845	2024-10-11	2024-03-14	2.66	2.89	2.68	3.0	0.006	0.72	0.0	0.04	15.98	0.02	1.915	5.57	0.87	1.8	98.2	0.0	1.45	0.49	0.83	4.04	3.0	0.003	0.49	0.0	0.04	14.95	0.00	2.079	4.68	0.66	0.7	99.3	0.0	1.55	0.82	0.56	0.87	4.55	8781	546	2	0	7	4	4322	logfile
✔	9EoH	19855	2024-10-09	2024-03-14	2.8	3.08	2.71	3.1	0.009	1.45	6.0	0.09	11.76	0.01	2.465	4.31	0.00	9.7	90.3	0.0	-3.95	0.48	0.89	6.19	3.1	0.004	0.82	0.0	0.05	17.16	0.00	2.553	8.04	2.31	4.6	95.4	0.0	-2.68	1.15	0.42	0.88	6.13	3414	444	6	0	0	0	0	logfile
✔	9Eo7	19846	2024-10-09	2024-03-14	2.8	2.99	2.48	3.0	0.009	1.59	1.0	0.10	12.22	0.01	2.583	3.31	1.47	6.7	93.3	0.0	-4.16	0.28	0.88	5.19	3.0	0.004	0.60	0.0	0.05	14.11	0.00	2.525	6.71	1.47	1.3	98.7	0.0	-1.88	0.68	0.27	0.88	3.98	595	77	1	0	0	0	0	logfile
✔	9EoE	19852	2024-10-09	2024-03-14	2.3	2.15	2.26	2.2	0.009	1.54	2.0	0.10	14.88	0.01	2.621	4.14	4.41	8.0	92.0	0.0	-3.08	0.21	0.80	6.35	2.2	0.004	0.72	0.0	0.05	16.64	0.01	2.632	2.51	2.94	5.3	94.7	0.0	-1.85	1.25	0.27	0.83	7.06	595	77	1	0	0	0	0	logfile
✔	8YoY	39460	2024-10-09	2024-03-14	3.21	4.39	3.38	4.0	0.003	0.50	0.0	0.04	14.42	0.00	2.189	7.69	0.00	3.7	96.3	0.0	-1.35	0.72	0.43	0.88	3.9	0.003	0.80	0.0	0.05	15.87	0.00	2.506	17.11	3.13	5.5	94.3	0.2	-1.30	1.51	0.85	0.73	0.76	5081	653	2	0	0	0	0	logfile
✔	9Eo9	19849	2024-10-09	2024-03-14	3.3	3.30	3.20	3.4	0.016	1.57	0.0	0.10	14.49	0.01	2.638	3.72	5.88	7.3	92.7	0.0	-4.62	0.25	0.84	3.70	3.5	0.003	0.79	0.0	0.05	14.70	0.00	2.549	3.75	2.21	2.0	98.0	0.0	-2.43	1.06	0.29	0.79	3.65	1190	154	2	0	0	0	0	logfile
✔	9B1K	44082	2024-10-09	2024-03-13	3.3	3.55	3.32	3.5	0.006	0.74	0.0	0.04	10.55	0.00	2.265	1.26	0.00	1.8	98.2	0.0	0.11	0.55	0.79	2.89	3.5	0.003	0.61	0.0	0.04	13.97	0.00	2.569	5.68	3.15	2.4	97.6	0.0	1.93	1.13	0.54	0.79	2.41	3911	512	2	0	1	0	0	logfile
✔	9B1L	44083	2024-10-09	2024-03-13	3.1	3.41	3.20	3.4	0.006	0.79	0.0	0.04	11.09	0.00	2.349	0.49	0.00	1.3	98.7	0.0	0.53	0.51	0.79	3.77	3.4	0.003	0.53	0.0	0.04	13.90	0.00	2.615	3.67	2.10	0.8	99.2	0.0	2.03	0.80	0.53	0.80	3.30	4041	529	2	0	1	0	0	logfile
✔	9B1M	44084	2024-10-09	2024-03-13	3.0	3.43	3.13	3.4	0.004	0.77	0.0	0.04	11.40	0.01	2.431	0.62	0.00	1.2	98.8	0.0	-0.01	0.49	0.77	4.39	3.4	0.003	0.60	0.0	0.04	14.12	0.00	2.520	4.24	1.91	1.9	98.1	0.0	2.56	0.64	0.52	0.79	3.10	3961	515	2	0	2	0	0	logfile
✔	9B1N	44085	2024-10-09	2024-03-13	3.1	3.52	3.27	3.5	0.005	0.79	0.0	0.04	11.09	0.01	2.454	0.75	0.00	1.6	98.4	0.0	-0.18	0.58	0.83	3.67	3.5	0.003	0.62	0.0	0.04	12.91	0.00	2.531	3.37	0.24	1.4	98.6	0.0	2.28	0.46	0.59	0.84	3.01	3954	515	2	0	2	0	0	logfile
✔	9B1J	44081	2024-10-09	2024-03-13	3.0	3.35	3.08	3.3	0.006	0.83	0.0	0.04	11.22	0.01	2.389	1.00	0.00	1.2	98.8	0.0	0.31	0.52	0.79	4.08	3.3	0.003	0.59	0.0	0.04	14.21	0.00	2.525	4.00	0.96	1.6	98.4	0.0	2.41	0.44	0.54	0.79	2.65	3953	515	2	0	3	0	0	logfile
✘	9ENP	19837	2024-10-12	2024-03-13	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11552	1338	7	48	4	7	0	logfile

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