Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9B1F	44077	2024-10-09	2024-03-13	2.9	3.23	2.98	3.3	0.004	0.61	0.0	0.04	11.29	0.00	2.308	1.38	0.00	1.2	98.8	0.0	0.97	0.59	0.81	3.59	3.3	0.003	0.59	0.0	0.04	14.18	0.00	2.528	4.76	1.92	1.4	98.6	0.0	1.98	0.79	0.58	0.81	2.96	3936	515	2	0	1	0	0	logfile
✔	9B1N	44085	2024-10-09	2024-03-13	3.1	3.52	3.27	3.5	0.005	0.79	0.0	0.04	11.09	0.01	2.454	0.75	0.00	1.6	98.4	0.0	-0.18	0.58	0.83	3.67	3.5	0.003	0.62	0.0	0.04	12.91	0.00	2.531	3.37	0.24	1.4	98.6	0.0	2.28	0.46	0.59	0.84	3.01	3954	515	2	0	2	0	0	logfile
✔	9B1K	44082	2024-10-09	2024-03-13	3.3	3.55	3.32	3.5	0.006	0.74	0.0	0.04	10.55	0.00	2.265	1.26	0.00	1.8	98.2	0.0	0.11	0.55	0.79	2.89	3.5	0.003	0.61	0.0	0.04	13.97	0.00	2.569	5.68	3.15	2.4	97.6	0.0	1.93	1.13	0.54	0.79	2.41	3911	512	2	0	1	0	0	logfile
✔	9ENB	19830	2024-10-10	2024-03-12	2.66	3.33	2.75	3.1	0.006	0.55	0.0	0.04	22.37	0.00	2.149	4.96	0.72	4.7	95.3	0.0	-0.08	0.86	0.88	4.12	3.1	0.005	0.55	0.0	0.04	22.10	0.00	2.097	3.35	0.54	4.4	95.6	0.0	0.70	0.87	0.85	0.87	3.88	8264	636	6	144	6	0	0	logfile
✔	9ENF	19833	2024-10-10	2024-03-12	2.97	4.02	3.10	3.1	0.003	0.61	0.0	0.04	24.22	0.00	2.114	15.41	0.00	7.6	92.4	0.0	-1.68	0.78	0.64	1.13	3.1	0.004	0.97	1.0	0.04	24.30	0.00	1.680	12.65	1.93	6.1	93.9	0.0	-2.06	0.97	0.79	0.66	0.69	8235	530	4	182	0	0	0	logfile
✔	9ENE	19832	2024-10-10	2024-03-12	3.15	3.87	3.19	3.4	0.004	0.64	0.0	0.06	22.56	0.01	2.233	7.49	1.04	5.9	94.1	0.0	-0.77	0.89	0.87	2.75	3.4	0.003	0.60	0.0	0.06	22.19	0.00	2.263	3.26	2.25	4.4	95.6	0.0	-0.72	0.26	0.89	0.87	2.14	8484	658	4	146	0	0	0	logfile
✔	8Yo7	39437	2024-10-12	2024-03-12	3.16	3.32	3.21	3.3	0.005	0.65	1.0	0.04	20.57	0.00	1.597	13.44	1.06	5.9	94.1	0.0	-0.79	0.73	0.78	1.60	3.3	0.003	0.61	0.0	0.04	20.58	0.00	2.057	10.18	3.72	5.2	94.8	0.0	-0.63	0.36	0.73	0.80	1.67	11395	1310	14	38	4	2	0	logfile
✔	8Yo3	39434	2024-10-12	2024-03-12	3.62	3.81	3.65	3.8	0.002	0.57	0.0	0.04	16.91	0.00	2.177	10.08	0.73	4.6	95.4	0.0	0.06	0.73	0.79	1.70	3.8	0.003	0.63	0.0	0.04	17.03	0.00	2.492	9.82	3.06	5.0	95.0	0.0	0.00	1.47	0.73	0.80	1.66	11514	1430	4	0	0	0	0	logfile
✔	8Yo5	39436	2024-10-11	2024-03-12	3.93	4.14	3.96	4.0	0.003	0.63	0.0	0.04	18.80	0.00	2.130	13.20	0.54	5.6	94.4	0.0	-1.41	0.81	0.81	0.90	4.0	0.003	0.66	0.0	0.04	19.18	0.00	2.458	11.27	3.34	5.5	94.5	0.0	-0.99	0.39	0.81	0.81	0.73	10342	1284	4	0	0	0	0	logfile
✔	9ENC	19831	2024-10-10	2024-03-12	3.36	4.12	3.44	3.9	0.002	0.51	0.0	0.04	21.40	0.00	2.232	3.79	0.20	5.3	94.7	0.0	-0.18	0.88	0.87	2.37	3.9	0.002	0.50	0.0	0.03	21.61	0.00	2.485	3.18	1.40	4.7	95.3	0.0	0.28	1.30	0.87	0.86	1.67	6249	566	3	75	0	0	0	logfile
✔	8Yo4	39435	2024-10-12	2024-03-12	3.2	3.42	3.23	3.4	0.003	0.57	0.0	0.04	19.70	0.00	2.047	9.54	0.24	8.1	91.9	0.0	-2.05	0.70	0.82	2.08	3.4	0.003	0.57	0.0	0.04	20.04	0.00	2.009	6.90	4.20	7.8	92.2	0.1	-1.51	0.27	0.69	0.81	1.98	12698	1452	8	48	4	0	0	logfile
✔	9EMC	19817	2024-10-13	2024-03-11	3.26	3.86	3.07	3.6	0.011	1.34	0.0	0.08	18.59	0.01	2.075	5.04	1.44	2.5	97.5	0.0	-3.73	0.75	0.68	0.35	3.6	0.004	0.77	1.0	0.04	17.63	0.00	1.938	6.26	1.62	2.6	97.4	0.0	1.41	1.14	0.82	0.90	1.95	15489	1977	12	0	12	0	0	logfile
✘	8YMP	39402	2024-10-11	2024-03-09	2.6	3.14	2.77	3.2	0.008	1.42	12.0	0.09	25.41	0.01	2.057	14.00	37.57	10.6	87.2	2.2	-3.93	0.45	0.50	1.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9570	1184	4	0	2	0	0	logfile
✔	8YMQ	39403	2024-10-11	2024-03-09	2.6	3.01	2.76	2.9	0.011	1.48	10.0	0.11	23.72	0.01	1.982	10.17	32.64	8.2	89.6	2.2	-3.41	0.55	0.71	2.94	3.0	0.003	0.70	0.0	0.04	18.78	0.01	2.473	7.30	5.04	6.5	93.4	0.2	0.68	1.21	0.60	0.87	2.94	10524	1302	4	0	4	0	0	logfile
✔	8YMK	39396	2024-10-09	2024-03-09	3.7	3.92	1.91	7.8	0.005	1.22	1.0	0.06	11.93	0.01	2.212	16.34	0.00	14.1	84.4	1.6	-1.73	0.59	0.62	-0.11	7.7	0.003	1.05	0.0	0.06	13.71	0.00	2.609	12.81	5.26	12.3	86.4	1.3	-1.08	1.86	0.59	0.60	-0.50	2744	452	2	0	0	0	0	logfile
✔	9EME	19818	2024-10-09	2024-03-08	2.92	3.09	2.69	3.1	0.015	2.12	0.0	0.12	14.21	0.01	2.019	0.00	0.00	0.0	100.0	0.0	-4.40	0.34	0.61	5.02	3.1	0.003	0.62	0.0	0.04	15.90	0.00	2.560	3.61	1.35	6.2	93.8	0.0	-3.04	1.18	0.49	0.82	5.35	4140	552	6	0	0	0	0	logfile
✔	9AYF	43990	2024-10-15	2024-03-07	3.6	2.18	—	2.0	0.004	0.67	0.0	0.05	14.71	0.01	2.191	5.85	0.00	2.5	97.5	0.0	0.19	0.79	0.77	2.69	2.0	0.003	0.54	0.0	0.04	15.26	0.00	2.304	4.33	2.95	2.7	97.3	0.0	0.70	0.97	0.79	0.78	3.00	19630	2441	14	0	27	0	0	logfile
✔	9AYB	43984	2024-10-09	2024-03-07	3.19	3.65	3.20	3.6	0.003	0.52	0.0	0.04	12.73	0.00	2.313	2.08	0.57	0.9	99.1	0.0	1.23	0.44	0.79	2.78	3.6	0.003	0.54	0.0	0.04	14.43	0.00	2.603	3.57	1.42	1.4	98.6	0.0	1.80	0.33	0.43	0.79	1.91	3347	428	1	0	0	0	0	logfile
✔	9EM8	19813	2024-10-11	2024-03-07	4.1	4.53	4.13	4.3	0.002	0.38	0.0	0.03	9.41	0.00	1.973	6.95	0.44	1.8	98.2	0.0	1.61	0.80	0.62	—	4.3	0.002	0.48	0.0	0.03	12.30	0.00	2.167	43.70	0.00	3.2	96.8	0.0	1.97	3.34	0.86	0.76	—	57040	6336	8	0	0	0	6168	logfile
✔	9EM7	19812	2024-10-11	2024-03-07	3.6	4.42	3.88	4.0	0.001	0.36	0.0	0.04	8.21	0.00	1.964	4.68	0.15	1.6	98.4	0.0	2.73	0.87	0.74	0.77	4.0	0.002	0.47	0.0	0.03	12.76	0.00	2.331	34.54	0.91	1.9	98.1	0.0	2.80	0.93	0.90	0.83	0.57	57048	6336	8	0	0	0	6176	logfile

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