Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9B33	44124	2024-10-09	2024-03-18	4.07	4.25	4.00	4.2	0.007	1.56	0.0	0.08	13.12	0.01	2.141	8.98	0.49	23.2	75.3	1.5	-6.09	0.63	0.62	—	4.1	0.004	1.00	0.0	0.05	12.87	0.01	2.033	18.94	0.00	22.1	77.0	0.9	-4.65	1.21	0.69	0.69	—	3619	474	4	0	4	0	0	logfile
✔	9EoH	19855	2024-10-09	2024-03-14	2.8	3.08	2.71	3.1	0.009	1.45	6.0	0.09	11.76	0.01	2.465	4.31	0.00	9.7	90.3	0.0	-3.95	0.48	0.89	6.19	3.1	0.004	0.82	0.0	0.05	17.16	0.00	2.553	8.04	2.31	4.6	95.4	0.0	-2.68	1.15	0.42	0.88	6.13	3414	444	6	0	0	0	0	logfile
✔	9EoE	19852	2024-10-09	2024-03-14	2.3	2.15	2.26	2.2	0.009	1.54	2.0	0.10	14.88	0.01	2.621	4.14	4.41	8.0	92.0	0.0	-3.08	0.21	0.80	6.35	2.2	0.004	0.72	0.0	0.05	16.64	0.01	2.632	2.51	2.94	5.3	94.7	0.0	-1.85	1.25	0.27	0.83	7.06	595	77	1	0	0	0	0	logfile
✔	9Eo7	19846	2024-10-09	2024-03-14	2.8	2.99	2.48	3.0	0.009	1.59	1.0	0.10	12.22	0.01	2.583	3.31	1.47	6.7	93.3	0.0	-4.16	0.28	0.88	5.19	3.0	0.004	0.60	0.0	0.05	14.11	0.00	2.525	6.71	1.47	1.3	98.7	0.0	-1.88	0.68	0.27	0.88	3.98	595	77	1	0	0	0	0	logfile
✔	9EoG	19854	2024-10-09	2024-03-14	3.0	3.00	2.79	3.2	0.009	1.63	6.0	0.10	12.85	0.01	2.445	5.03	4.48	6.7	93.3	0.0	-4.10	0.39	0.90	4.14	3.2	0.006	0.82	0.0	0.05	15.52	0.00	2.554	9.64	1.00	5.1	94.9	0.0	-1.95	1.09	0.37	0.88	3.73	3522	462	6	0	0	0	0	logfile
✔	8YoY	39460	2024-10-09	2024-03-14	3.21	4.39	3.38	4.0	0.003	0.50	0.0	0.04	14.42	0.00	2.189	7.69	0.00	3.7	96.3	0.0	-1.35	0.72	0.43	0.88	3.9	0.003	0.80	0.0	0.05	15.87	0.00	2.506	17.11	3.13	5.5	94.3	0.2	-1.30	1.51	0.85	0.73	0.76	5081	653	2	0	0	0	0	logfile
✔	9Eo4	19845	2024-10-11	2024-03-14	2.66	2.89	2.68	3.0	0.006	0.72	0.0	0.04	15.98	0.02	1.915	5.57	0.87	1.8	98.2	0.0	1.45	0.49	0.83	4.04	3.0	0.003	0.49	0.0	0.04	14.95	0.00	2.079	4.68	0.66	0.7	99.3	0.0	1.55	0.82	0.56	0.87	4.55	8781	546	2	0	7	4	4322	logfile
✔	9Eo9	19849	2024-10-09	2024-03-14	3.3	3.30	3.20	3.4	0.016	1.57	0.0	0.10	14.49	0.01	2.638	3.72	5.88	7.3	92.7	0.0	-4.62	0.25	0.84	3.70	3.5	0.003	0.79	0.0	0.05	14.70	0.00	2.549	3.75	2.21	2.0	98.0	0.0	-2.43	1.06	0.29	0.79	3.65	1190	154	2	0	0	0	0	logfile
✔	9B1o	44086	2024-10-09	2024-03-13	3.1	3.49	3.20	3.4	0.004	0.76	0.0	0.04	11.21	0.01	2.424	0.63	0.00	1.6	98.4	0.0	-0.17	0.57	0.83	3.90	3.4	0.003	0.58	0.0	0.04	13.62	0.00	2.581	4.13	0.96	1.6	98.4	0.0	2.55	0.52	0.56	0.83	3.38	3945	515	2	0	2	0	0	logfile
✔	9B1L	44083	2024-10-09	2024-03-13	3.1	3.41	3.20	3.4	0.006	0.79	0.0	0.04	11.09	0.00	2.349	0.49	0.00	1.3	98.7	0.0	0.53	0.51	0.79	3.77	3.4	0.003	0.53	0.0	0.04	13.90	0.00	2.615	3.67	2.10	0.8	99.2	0.0	2.03	0.80	0.53	0.80	3.30	4041	529	2	0	1	0	0	logfile
✔	9B1M	44084	2024-10-09	2024-03-13	3.0	3.43	3.13	3.4	0.004	0.77	0.0	0.04	11.40	0.01	2.431	0.62	0.00	1.2	98.8	0.0	-0.01	0.49	0.77	4.39	3.4	0.003	0.60	0.0	0.04	14.12	0.00	2.520	4.24	1.91	1.9	98.1	0.0	2.56	0.64	0.52	0.79	3.10	3961	515	2	0	2	0	0	logfile
✔	9B1F	44077	2024-10-09	2024-03-13	2.9	3.23	2.98	3.3	0.004	0.61	0.0	0.04	11.29	0.00	2.308	1.38	0.00	1.2	98.8	0.0	0.97	0.59	0.81	3.59	3.3	0.003	0.59	0.0	0.04	14.18	0.00	2.528	4.76	1.92	1.4	98.6	0.0	1.98	0.79	0.58	0.81	2.96	3936	515	2	0	1	0	0	logfile
✘	9ENP	19837	2024-10-12	2024-03-13	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11552	1338	7	48	4	7	0	logfile
✔	9B1J	44081	2024-10-09	2024-03-13	3.0	3.35	3.08	3.3	0.006	0.83	0.0	0.04	11.22	0.01	2.389	1.00	0.00	1.2	98.8	0.0	0.31	0.52	0.79	4.08	3.3	0.003	0.59	0.0	0.04	14.21	0.00	2.525	4.00	0.96	1.6	98.4	0.0	2.41	0.44	0.54	0.79	2.65	3953	515	2	0	3	0	0	logfile
✔	9B1K	44082	2024-10-09	2024-03-13	3.3	3.55	3.32	3.5	0.006	0.74	0.0	0.04	10.55	0.00	2.265	1.26	0.00	1.8	98.2	0.0	0.11	0.55	0.79	2.89	3.5	0.003	0.61	0.0	0.04	13.97	0.00	2.569	5.68	3.15	2.4	97.6	0.0	1.93	1.13	0.54	0.79	2.41	3911	512	2	0	1	0	0	logfile
✘	9ENQ	19838	2024-10-10	2024-03-13	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5743	707	6	4	4	7	0	logfile
✔	9B1N	44085	2024-10-09	2024-03-13	3.1	3.52	3.27	3.5	0.005	0.79	0.0	0.04	11.09	0.01	2.454	0.75	0.00	1.6	98.4	0.0	-0.18	0.58	0.83	3.67	3.5	0.003	0.62	0.0	0.04	12.91	0.00	2.531	3.37	0.24	1.4	98.6	0.0	2.28	0.46	0.59	0.84	3.01	3954	515	2	0	2	0	0	logfile
✔	8Yo3	39434	2024-10-12	2024-03-12	3.62	3.81	3.65	3.8	0.002	0.57	0.0	0.04	16.91	0.00	2.177	10.08	0.73	4.6	95.4	0.0	0.06	0.73	0.79	1.70	3.8	0.003	0.63	0.0	0.04	17.03	0.00	2.492	9.82	3.06	5.0	95.0	0.0	0.00	1.47	0.73	0.80	1.66	11514	1430	4	0	0	0	0	logfile
✔	9ENE	19832	2024-10-10	2024-03-12	3.15	3.87	3.19	3.4	0.004	0.64	0.0	0.06	22.56	0.01	2.233	7.49	1.04	5.9	94.1	0.0	-0.77	0.89	0.87	2.75	3.4	0.003	0.60	0.0	0.06	22.19	0.00	2.263	3.26	2.25	4.4	95.6	0.0	-0.72	0.26	0.89	0.87	2.14	8484	658	4	146	0	0	0	logfile
✔	8Yo5	39436	2024-10-11	2024-03-12	3.93	4.14	3.96	4.0	0.003	0.63	0.0	0.04	18.80	0.00	2.130	13.20	0.54	5.6	94.4	0.0	-1.41	0.81	0.81	0.90	4.0	0.003	0.66	0.0	0.04	19.18	0.00	2.458	11.27	3.34	5.5	94.5	0.0	-0.99	0.39	0.81	0.81	0.73	10342	1284	4	0	0	0	0	logfile

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