Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V90	31806	2024-10-12	2021-08-24	3.5	3.21	3.42	3.5	0.005	0.73	3.0	0.04	26.09	0.00	2.219	8.45	4.01	4.7	94.8	0.5	-0.16	0.66	0.78	2.00	3.4	0.003	0.52	0.0	0.03	27.15	0.00	2.381	6.36	0.77	2.9	97.1	0.0	2.66	1.11	0.72	0.83	2.18	12148	781	10	290	0	0	0	logfile
✔	7PiU	13453	2024-10-10	2021-08-23	2.58	2.73	—	2.7	0.013	1.71	0.0	0.09	14.84	0.00	2.250	3.33	0.97	4.1	95.8	0.1	-2.07	0.70	0.88	4.78	2.7	0.002	0.53	0.0	0.04	16.28	0.00	2.524	4.63	1.46	1.9	98.1	0.0	2.02	0.94	0.69	0.88	4.28	7788	974	14	0	3	88	0	logfile
✔	7PiV	13454	2024-10-10	2021-08-23	2.86	2.87	—	3.2	0.013	1.71	1.0	0.10	13.14	0.00	2.234	3.79	0.86	5.7	94.1	0.2	-2.91	0.70	0.84	3.61	3.2	0.003	0.60	0.0	0.04	15.05	0.00	2.343	5.42	2.32	3.1	96.9	0.0	0.99	0.95	0.69	0.85	3.29	7814	976	13	0	2	115	0	logfile
✔	7V8M	31804	2024-10-11	2021-08-23	4.2	4.31	—	4.2	0.004	0.81	0.0	0.05	13.86	0.01	2.046	15.98	0.10	4.1	95.9	0.0	-0.28	0.67	0.72	—	4.2	0.003	0.76	0.0	0.05	14.01	0.00	2.367	11.55	0.00	4.9	95.1	0.0	0.22	0.62	0.68	0.78	—	9338	1263	4	0	0	0	0	logfile
✔	7V8i	31802	2024-10-11	2021-08-23	3.6	3.75	—	3.7	0.005	0.87	0.0	0.05	15.81	0.01	2.007	11.55	1.36	3.9	95.8	0.3	-0.76	0.59	0.61	1.25	3.7	0.004	0.70	0.0	0.04	17.09	0.00	1.997	11.08	2.62	4.5	95.4	0.1	-0.39	1.14	0.67	0.72	1.09	9388	1261	6	0	4	0	0	logfile
✔	7RXG	24730	2024-10-12	2021-08-23	2.28	2.01	—	2.3	0.008	1.27	0.0	0.05	22.39	0.00	2.211	14.00	0.18	2.5	97.4	0.2	-0.83	0.61	0.82	4.82	2.3	0.002	0.52	0.0	0.04	18.54	0.00	2.300	15.29	1.61	2.4	97.6	0.0	2.09	0.91	0.66	0.87	4.94	11380	1300	6	0	26	48	96	logfile
✔	7V87	31792	2024-10-10	2021-08-22	3.3	3.93	—	3.6	0.003	0.65	0.0	0.05	16.49	0.00	2.167	6.58	0.00	5.4	94.6	0.0	-0.21	0.79	0.84	2.44	3.6	0.003	0.58	0.0	0.04	15.81	0.00	2.491	4.10	1.57	5.7	94.3	0.0	0.18	0.34	0.79	0.86	2.19	6617	797	6	0	12	0	0	logfile
✔	7RXA	24726	2024-10-11	2021-08-22	3.08	3.22	—	3.3	0.006	1.11	0.0	0.05	17.17	0.01	2.381	1.32	0.00	5.4	94.6	0.0	-4.42	0.67	0.84	2.99	3.3	0.004	0.58	0.0	0.04	14.89	0.00	2.472	2.64	1.35	4.8	95.2	0.0	1.13	0.32	0.65	0.84	2.78	8694	1156	4	0	8	0	0	logfile
✔	7V80	31785	2024-10-10	2021-08-22	3.9	4.10	—	4.0	0.004	0.65	0.0	0.05	14.72	0.00	2.120	8.76	0.00	6.2	93.8	0.0	-0.76	0.65	0.72	1.58	4.0	0.004	0.70	0.0	0.04	16.10	0.00	2.330	8.06	1.86	6.2	93.8	0.0	-0.40	1.16	0.67	0.76	1.36	6609	797	7	0	11	0	0	logfile
✔	7V8B	31796	2024-10-10	2021-08-22	3.2	3.85	—	3.6	0.003	0.59	0.0	0.04	15.61	0.00	2.308	6.16	0.00	5.0	94.8	0.1	-0.34	0.79	0.85	2.31	3.6	0.003	0.59	0.0	0.04	15.60	0.00	2.425	4.31	1.00	5.3	94.6	0.1	0.30	1.16	0.79	0.88	2.30	6650	797	9	0	14	0	0	logfile
✔	7RXC	24728	2024-10-11	2021-08-22	3.2	2.84	—	3.2	0.006	0.78	0.0	0.04	14.27	0.01	2.089	9.58	0.00	2.3	97.7	0.0	1.18	0.66	0.79	2.95	3.2	0.004	0.59	0.0	0.04	15.84	0.00	2.437	7.80	1.60	2.6	97.4	0.0	1.32	0.35	0.63	0.81	2.54	9360	1178	7	0	6	0	0	logfile
✔	7V84	31789	2024-10-10	2021-08-22	3.0	3.81	—	3.5	0.003	0.54	0.0	0.04	16.31	0.00	2.199	5.95	0.00	4.3	95.7	0.0	-0.37	0.82	0.87	2.88	3.5	0.003	0.64	0.0	0.04	15.60	0.00	2.453	5.17	0.71	4.9	95.1	0.0	0.06	0.37	0.78	0.84	3.05	6636	797	9	0	13	0	0	logfile
✔	7RXD	24729	2024-10-11	2021-08-22	3.6	3.31	—	3.7	0.003	0.58	0.0	0.04	13.84	0.01	2.138	9.41	0.21	2.6	97.4	0.0	0.47	0.69	0.75	2.16	3.7	0.003	0.61	0.0	0.04	15.62	0.00	2.539	8.34	1.97	3.1	96.9	0.0	0.66	0.39	0.69	0.75	1.74	9007	1148	6	0	2	0	0	logfile
✔	7RXB	24727	2024-10-10	2021-08-22	3.07	3.22	—	3.2	0.009	1.15	0.0	0.05	16.23	0.01	2.437	0.72	0.00	6.0	94.0	0.0	-4.88	0.67	0.89	3.48	3.2	0.004	0.59	0.0	0.04	15.08	0.00	2.595	1.32	1.26	4.6	95.4	0.0	-0.16	0.26	0.64	0.89	3.21	8506	1096	4	0	8	0	0	logfile
✔	7RX3	24723	2024-10-11	2021-08-21	3.3	3.49	—	3.4	0.009	1.37	0.0	0.06	22.83	0.01	2.327	6.98	0.20	7.5	92.5	0.0	-3.98	0.74	0.84	3.22	3.4	0.003	0.58	0.0	0.04	18.20	0.00	2.434	5.16	2.17	5.7	94.3	0.0	1.07	0.46	0.73	0.86	2.27	10130	1182	4	0	16	0	0	logfile
✔	7V7H	31771	2024-10-10	2021-08-21	3.2	4.02	—	3.7	0.004	0.62	0.0	0.05	14.69	0.00	2.162	7.22	0.00	4.2	95.7	0.1	-0.31	0.85	0.85	1.93	3.7	0.005	0.66	1.0	0.05	14.25	0.00	2.141	5.55	0.83	3.7	96.3	0.1	-0.10	0.32	0.85	0.84	1.79	50949	6209	84	0	174	0	0	logfile
✔	7RX5	24725	2024-10-10	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.33	0.0	0.03	12.76	0.00	2.676	2.72	0.00	0.0	100.0	0.0	5.55	0.19	0.70	0.87	2.91	9120	1160	40	0	0	0	0	logfile
✘	7RX2	24722	2024-10-11	2021-08-21	2.7	2.29	—	2.7	0.010	1.08	0.0	0.05	18.46	0.00	2.196	11.76	0.19	5.6	94.4	0.0	-4.48	0.66	0.86	4.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10390	1230	6	0	18	6	12	logfile
✔	7V7J	31773	2024-10-10	2021-08-21	3.4	4.17	—	3.8	0.005	0.64	0.0	0.05	14.70	0.00	2.144	9.62	0.00	6.1	93.8	0.1	-0.39	0.86	0.85	2.06	3.8	0.004	0.60	0.0	0.04	14.18	0.00	2.380	6.27	1.05	5.2	94.7	0.1	-0.35	0.32	0.87	0.87	1.77	51072	6228	84	0	174	0	0	logfile
✔	7V7i	31772	2024-10-10	2021-08-21	3.3	4.09	—	3.8	0.005	0.67	0.0	0.05	14.45	0.00	2.128	8.29	0.00	5.4	94.5	0.2	-0.23	0.86	0.85	2.37	3.8	0.003	0.57	0.0	0.04	14.32	0.00	2.437	4.71	1.32	4.6	95.3	0.1	-0.18	0.33	0.86	0.87	1.92	51072	6228	84	0	174	0	0	logfile

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