Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V7J	31773	2024-10-10	2021-08-21	3.4	4.17	—	3.8	0.005	0.64	0.0	0.05	14.70	0.00	2.144	9.62	0.00	6.1	93.8	0.1	-0.39	0.86	0.85	2.06	3.8	0.004	0.60	0.0	0.04	14.18	0.00	2.380	6.27	1.05	5.2	94.7	0.1	-0.35	0.32	0.87	0.87	1.77	51072	6228	84	0	174	0	0	logfile
✘	7PiJ	13438	2024-10-10	2021-08-20	3.78	4.14	—	4.1	0.015	1.17	0.0	0.05	13.54	0.01	1.166	13.45	0.11	10.6	89.3	0.1	-3.26	0.50	0.53	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8194	1068	8	0	0	16	0	logfile
✔	7V69	31739	2024-10-11	2021-08-20	3.4	2.24	—	2.0	0.003	0.65	0.0	0.04	12.64	0.00	2.096	13.28	0.00	2.9	97.1	0.0	-2.02	0.68	0.64	2.22	2.0	0.004	0.66	0.0	0.04	15.16	0.00	2.469	11.80	2.91	4.3	95.7	0.0	-1.07	0.44	0.70	0.69	2.00	8539	1122	5	0	0	0	0	logfile
✔	7V6C	31742	2024-10-13	2021-08-20	3.3	2.45	3.20	3.3	0.012	1.56	1.0	0.09	15.17	0.01	2.230	6.10	3.90	3.5	96.5	0.0	-0.64	0.64	0.76	2.40	3.2	0.003	0.58	0.0	0.04	16.63	0.00	2.565	7.24	2.11	2.8	97.2	0.0	1.06	1.84	0.70	0.78	2.29	15643	1800	6	54	0	0	0	logfile
✔	7RWJ	24717	2024-10-11	2021-08-20	3.5	3.71	—	3.7	0.008	1.17	4.0	0.07	16.67	0.01	2.258	9.32	1.35	5.1	94.6	0.3	-3.76	0.78	0.80	2.26	3.7	0.003	0.61	0.0	0.04	16.09	0.00	2.338	5.52	1.64	4.5	95.5	0.0	1.06	0.46	0.77	0.80	1.93	9906	1212	4	0	8	0	0	logfile
✔	7V6A	31740	2024-10-11	2021-08-20	3.6	2.46	—	2.1	0.004	0.71	0.0	0.05	14.08	0.00	2.113	14.17	0.00	4.4	95.6	0.0	-1.88	0.71	0.70	2.85	2.0	0.003	0.71	0.0	0.04	16.53	0.00	2.497	11.27	4.90	4.0	96.0	0.0	-1.06	0.46	0.71	0.69	2.05	8584	1122	6	0	1	0	0	logfile
✔	7V6B	31741	2024-10-13	2021-08-20	3.3	2.81	3.21	3.3	0.012	1.65	3.0	0.09	13.69	0.01	2.312	6.55	5.01	4.3	95.7	0.0	-1.67	0.57	0.72	2.30	3.2	0.003	0.60	0.0	0.04	16.01	0.00	2.512	7.21	2.57	2.5	97.5	0.0	0.78	2.25	0.68	0.79	2.18	13633	1678	2	0	0	0	0	logfile
✔	7V6Z	31754	2024-10-10	2021-08-20	3.64	3.89	—	3.9	0.012	1.67	6.0	0.11	14.34	0.01	2.282	9.81	10.76	3.2	96.5	0.3	1.70	0.64	0.71	1.36	3.8	0.005	0.79	0.0	0.04	15.11	0.01	2.360	12.47	5.38	3.7	96.2	0.1	0.59	0.74	0.64	0.73	1.45	7082	1008	3	0	6	0	0	logfile
✔	7V6Y	31753	2024-10-10	2021-08-20	3.5	3.75	—	3.8	0.014	1.85	9.0	0.13	16.47	0.01	2.258	12.19	11.06	5.3	94.5	0.2	0.59	0.59	0.74	1.29	3.8	0.003	0.68	0.0	0.04	15.62	0.01	2.342	7.83	4.40	4.6	95.4	0.0	0.83	1.19	0.62	0.76	2.06	7484	990	3	0	8	0	0	logfile
✔	7V68	31738	2024-10-11	2021-08-20	3.4	2.57	—	3.3	0.007	0.83	1.0	0.05	12.84	0.02	2.151	16.41	0.00	3.1	96.8	0.1	-0.44	0.71	0.69	1.57	2.1	0.004	0.75	0.0	0.05	15.80	0.00	2.519	14.64	3.69	3.8	96.2	0.0	-0.18	0.48	0.72	0.72	1.38	8577	1122	6	0	2	0	0	logfile
✔	7RX0	24721	2024-10-11	2021-08-20	3.89	4.63	—	4.5	0.006	0.85	1.0	0.05	15.61	0.00	1.666	29.17	0.00	7.1	92.9	0.0	-2.61	0.60	0.82	0.77	4.5	0.003	0.82	0.0	0.04	17.22	0.00	2.094	16.09	3.03	4.4	95.6	0.0	-0.25	0.80	0.59	0.82	0.72	9673	1182	7	0	83	0	0	logfile
✔	7PiK	13439	2024-10-13	2021-08-20	2.68	2.96	2.75	2.9	0.003	0.61	0.0	0.04	19.28	0.00	2.284	3.33	0.08	2.9	97.1	0.0	0.06	0.73	0.79	3.31	2.9	0.003	0.61	0.0	0.04	20.99	0.01	2.063	2.92	1.20	3.0	97.0	0.0	0.41	0.32	0.73	0.83	2.80	15475	1624	7	126	0	0	0	logfile
✔	7PiM	13442	2024-10-12	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	45.64	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	6.0	0.002	0.52	0.0	0.04	11.97	0.00	2.029	59.38	0.00	2.5	97.5	0.0	0.50	1.51	0.82	0.76	—	11844	1412	12	0	8	0	524	logfile
✔	7Pii	13437	2024-10-12	2021-08-19	2.68	2.39	—	2.7	0.010	0.78	0.0	0.05	28.13	0.00	2.229	8.23	0.31	4.0	96.0	0.0	-0.89	0.51	0.38	3.69	2.6	0.004	0.65	0.0	0.04	28.49	0.00	2.532	6.42	2.18	2.5	97.5	0.0	1.84	0.98	0.81	0.88	3.37	11192	779	12	245	0	0	0	logfile
✔	7RWC	24714	2024-10-12	2021-08-19	3.8	4.08	3.75	4.0	0.004	0.60	0.0	0.04	12.87	0.00	2.175	8.83	0.09	5.6	94.4	0.1	0.33	0.71	0.72	1.25	4.1	0.003	0.57	0.0	0.04	14.83	0.00	2.399	7.50	2.96	4.6	95.3	0.1	0.59	0.34	0.74	0.77	1.11	12110	1705	5	0	8	0	0	logfile
✔	7RW9	24711	2024-10-11	2021-08-19	3.9	4.54	3.87	4.2	0.003	0.63	0.0	0.04	13.18	0.00	2.140	7.83	0.11	6.4	93.3	0.3	0.44	0.78	0.69	1.28	4.2	0.003	0.67	0.0	0.04	15.00	0.00	2.488	7.03	2.02	4.6	95.1	0.3	1.35	0.55	0.88	0.84	0.97	10365	1456	4	0	0	0	0	logfile
✔	7RW6	24709	2024-10-12	2021-08-19	2.55	2.65	—	2.8	0.003	0.55	0.0	0.04	11.59	0.00	2.167	9.15	0.00	5.9	94.1	0.0	0.17	0.86	0.86	4.11	2.8	0.003	0.66	0.0	0.04	14.95	0.00	2.522	7.29	1.58	5.2	94.8	0.0	0.12	0.40	0.87	0.88	3.41	13130	1634	6	0	2	0	0	logfile
✘	7RWA	24712	2024-10-14	2021-08-19	4.7	5.66	4.89	4.6	0.003	0.89	0.0	0.05	5.84	0.00	1.914	2.65	0.00	5.8	93.7	0.5	-0.12	0.84	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16158	3244	10	0	0	0	0	logfile
✔	7RW8	24710	2024-10-12	2021-08-19	3.5	4.25	3.47	3.8	0.004	0.58	0.0	0.04	13.41	0.00	2.069	5.73	0.00	3.5	96.5	0.0	0.99	0.80	0.72	2.46	3.8	0.002	0.52	0.0	0.04	14.66	0.00	2.364	4.95	0.65	3.2	96.8	0.0	2.17	0.98	0.89	0.85	1.83	12572	1712	4	0	0	0	0	logfile
✔	7PHR	13427	2024-10-12	2021-08-18	3.08	3.38	—	3.4	0.006	0.77	0.0	0.05	12.73	0.00	2.475	5.22	0.08	2.6	97.4	0.0	-0.08	0.66	0.79	3.56	3.4	0.004	0.52	0.0	0.04	14.56	0.00	2.540	5.35	2.17	2.5	97.5	0.0	0.73	0.38	0.66	0.81	3.45	11511	1443	14	0	6	0	0	logfile

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