Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7PHP	13424	2024-10-10	2021-08-18	3.47	3.48	—	3.6	0.017	0.90	0.0	0.05	14.25	0.01	2.182	6.60	0.11	7.0	93.0	0.0	-1.50	0.72	0.83	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8647	1134	8	0	0	21	0	logfile
✔	7V5D	31723	2024-10-11	2021-08-17	3.4	4.15	—	4.0	0.010	0.94	0.0	0.05	16.06	0.01	2.215	8.62	0.63	8.5	91.5	0.0	-2.76	0.65	0.81	1.75	4.0	0.003	0.66	0.0	0.04	17.16	0.00	2.574	7.32	2.95	4.4	95.6	0.0	0.69	0.93	0.65	0.81	1.50	8822	1140	3	0	1	0	0	logfile
✔	7PHG	13415	2024-10-10	2021-08-17	4.3	4.13	—	4.0	0.003	0.68	0.0	0.04	13.71	0.00	1.916	18.40	0.00	11.9	88.1	0.0	-3.68	0.78	0.67	—	4.0	0.003	0.65	0.0	0.04	13.53	0.00	2.408	12.06	0.00	10.5	89.5	0.0	-3.39	0.95	0.77	0.65	—	6469	427	3	0	0	0	3160	logfile
✔	7RUG	24705	2024-10-09	2021-08-17	4.7	5.03	4.07	4.8	0.003	0.50	0.0	0.04	12.58	0.00	1.920	12.90	0.00	1.6	98.4	0.0	3.26	0.59	0.66	—	4.8	0.003	0.51	0.0	0.04	13.15	0.00	2.414	10.32	0.00	1.6	98.4	0.0	2.98	1.63	0.59	0.66	—	5429	331	2	0	0	0	2728	logfile
✔	7V5G	31724	2024-10-09	2021-08-17	4.47	4.49	—	3.6	0.002	0.50	1.0	0.04	7.72	0.00	2.210	9.86	0.08	5.7	94.2	0.1	-2.80	0.86	0.71	—	3.8	0.005	0.77	0.0	0.05	12.19	0.00	2.328	18.46	0.00	4.6	95.4	0.0	-0.73	2.24	0.89	0.79	—	48150	6193	28	0	0	0	0	logfile
✔	7V5C	31722	2024-10-11	2021-08-17	3.2	3.83	—	3.7	0.009	0.63	0.0	0.04	13.83	0.00	1.766	28.98	0.00	6.7	93.3	0.0	-6.06	0.66	0.86	2.72	3.7	0.004	0.71	0.0	0.04	16.02	0.00	1.877	5.24	3.52	4.4	95.6	0.0	-0.89	0.97	0.66	0.86	2.53	8916	1144	4	0	6	0	0	logfile
✔	7RU0	24692	2024-10-14	2021-08-16	4.3	3.77	—	4.2	0.005	1.13	0.0	0.06	14.47	0.01	2.146	8.30	0.00	6.9	93.1	0.0	-3.06	0.48	0.48	—	4.2	0.003	0.87	0.0	0.04	14.36	0.01	2.274	10.74	0.00	5.7	94.3	0.0	-0.75	0.99	0.61	0.62	—	12284	1536	8	0	4	0	0	logfile
✔	7RU4	24696	2024-10-09	2021-08-16	3.3	3.64	3.27	3.4	0.023	1.89	0.0	0.11	9.65	0.01	2.362	0.60	0.55	3.1	96.9	0.0	0.06	0.75	0.80	3.98	3.4	0.004	0.76	0.0	0.05	14.77	0.00	2.508	6.45	2.47	6.7	93.3	0.0	-0.86	1.35	0.76	0.82	2.42	3382	428	5	0	4	0	0	logfile
✔	7RU6	24698	2024-10-09	2021-08-16	4.4	4.33	3.79	4.2	0.003	0.59	0.0	0.04	15.25	0.00	2.027	10.32	0.00	0.3	99.7	0.0	3.15	0.71	0.67	—	4.2	0.003	0.53	0.0	0.03	12.87	0.00	2.486	7.00	0.00	1.3	98.7	0.0	3.51	0.77	0.74	0.71	—	5426	331	2	0	0	0	2725	logfile
✔	7RUA	24701	2024-10-12	2021-08-16	3.4	3.27	3.30	3.3	0.003	0.57	0.0	0.04	14.91	0.01	1.920	7.52	0.00	2.2	97.8	0.0	1.77	0.65	0.76	2.85	3.3	0.004	0.65	0.0	0.04	16.75	0.00	2.054	9.25	2.82	2.9	97.1	0.0	1.66	1.29	0.75	0.85	2.65	11603	1448	10	0	5	0	0	logfile
✔	7RU9	24700	2024-10-12	2021-08-16	3.3	2.93	3.26	3.2	0.003	0.59	0.0	0.07	14.94	0.01	1.899	7.92	0.00	2.9	97.1	0.0	1.87	0.65	0.78	2.93	3.2	0.004	0.58	0.0	0.04	16.57	0.00	1.937	6.97	1.26	2.5	97.5	0.0	1.87	0.55	0.73	0.84	2.59	11595	1448	10	0	5	0	0	logfile
✔	7RUC	24702	2024-10-11	2021-08-16	3.6	3.41	3.38	3.4	0.004	0.53	0.0	0.04	14.65	0.00	1.772	7.64	0.00	4.6	95.4	0.0	1.89	0.68	0.76	2.48	3.4	0.003	0.61	0.0	0.04	16.48	0.01	1.977	6.62	2.36	2.3	97.7	0.0	1.79	0.48	0.76	0.84	2.24	10766	1344	9	0	5	0	0	logfile
✔	7RU8	24699	2024-10-09	2021-08-16	3.8	4.10	3.80	3.9	0.022	1.87	0.0	0.12	10.39	0.01	2.356	1.12	0.00	6.1	93.9	0.0	-0.23	0.77	0.72	2.53	3.9	0.004	0.77	0.0	0.05	15.08	0.00	2.535	11.80	3.49	7.1	92.9	0.0	-1.22	1.01	0.78	0.75	0.97	3198	405	5	0	3	0	0	logfile
✔	7RTV	24690	2024-10-09	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	24.99	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.003	0.92	0.0	0.05	17.62	0.00	2.411	14.38	4.22	2.5	97.5	0.0	3.27	0.50	0.41	0.64	0.28	2881	366	3	0	6	0	0	logfile
✔	7RTT	24688	2024-10-10	2021-08-15	3.5	3.91	—	3.9	0.003	0.63	0.0	0.04	20.57	0.00	2.239	5.02	0.00	3.6	96.4	0.0	2.65	0.60	0.73	1.03	3.9	0.002	0.55	0.0	0.03	15.50	0.00	2.374	5.10	0.75	4.1	95.9	0.0	3.98	1.65	0.60	0.73	0.21	6268	791	8	0	14	0	0	logfile
✔	7RTU	24689	2024-10-10	2021-08-15	3.89	4.06	—	4.1	0.003	0.61	0.0	0.04	20.84	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.003	0.60	0.0	0.04	16.20	0.00	2.479	5.44	2.35	2.8	97.2	0.0	4.15	0.33	0.62	0.73	0.38	5962	754	6	0	12	0	0	logfile
✔	7PGS	13394	2024-10-14	2021-08-15	3.4	3.61	3.34	3.4	0.002	0.40	0.0	0.03	10.77	0.00	1.972	3.57	0.66	1.2	98.8	0.0	-0.33	0.80	0.79	2.03	3.4	0.004	0.55	0.0	0.04	13.34	0.00	2.302	3.87	0.64	3.1	96.8	0.0	1.72	1.63	0.82	0.81	1.39	67202	4210	3	0	1	0	33807	logfile
✔	7RTW	24691	2024-10-10	2021-08-15	3.23	3.74	—	3.7	0.004	0.68	0.0	0.05	20.75	0.00	2.213	9.12	0.00	3.9	96.1	0.0	2.01	0.60	0.70	0.84	3.7	0.003	0.65	0.0	0.04	16.03	0.00	2.357	7.88	2.38	3.0	97.0	0.0	2.55	0.42	0.60	0.72	0.84	5644	701	8	0	17	0	0	logfile
✔	7RTM	24683	2024-10-11	2021-08-13	3.4	3.54	3.61	20.0	0.031	3.05	44.0	0.18	16.56	0.03	1.051	1.40	2.80	6.8	93.0	0.3	-1.12	0.10	0.04	0.21	3.5	0.003	0.86	0.0	0.04	16.11	0.00	2.352	10.47	2.00	4.7	95.3	0.1	0.01	4.69	0.66	0.78	1.46	9161	1142	6	0	12	0	0	logfile
✔	7V4L	31715	2024-10-11	2021-08-13	3.4	3.80	—	3.8	0.005	0.82	1.0	0.06	15.20	0.01	2.102	18.13	3.71	8.8	90.6	0.5	-2.60	0.55	0.55	1.34	3.8	0.004	0.76	0.0	0.05	16.39	0.01	2.164	16.02	2.73	8.0	91.9	0.1	-2.76	0.74	0.58	0.61	1.38	9345	1190	5	0	0	0	0	logfile

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