Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PEA	13350	2024-10-12	2021-08-09	4.07	4.50	—	4.2	0.002	0.47	0.0	0.04	14.26	0.00	2.239	3.98	4.24	4.7	95.3	0.0	-2.53	0.84	0.72	—	4.2	0.003	0.65	0.0	0.04	13.47	0.00	2.363	10.47	0.00	3.1	96.8	0.1	1.08	1.48	0.86	0.77	—	58252	7222	12	0	114	0	0	logfile
✔	7V2M	31656	2024-10-11	2021-08-09	3.4	3.28	3.35	3.1	0.008	1.15	3.0	0.11	23.60	0.00	2.232	6.24	0.33	6.5	93.2	0.3	-0.70	0.80	0.86	2.18	3.1	0.006	0.73	0.0	0.04	23.69	0.01	2.390	9.12	2.97	7.1	92.8	0.1	-0.70	0.33	0.80	0.87	1.93	55229	2909	25	1486	2	0	0	logfile
✔	7RR0	24649	2024-10-09	2021-08-08	3.12	3.40	—	3.4	0.004	0.97	0.0	0.06	12.28	0.01	2.327	2.79	0.00	1.4	98.6	0.0	0.12	0.75	0.77	2.73	3.4	0.003	0.76	0.0	0.04	16.08	0.00	2.484	8.22	2.25	2.6	97.4	0.0	0.06	0.67	0.76	0.80	2.73	3297	422	4	0	1	0	0	logfile
✔	7V1Y	31630	2024-10-12	2021-08-07	2.82	2.93	—	2.9	0.006	0.78	8.0	0.06	13.04	0.00	2.254	2.36	0.15	2.9	97.1	0.0	1.48	0.69	0.86	3.24	2.9	0.002	0.55	4.0	0.04	16.14	0.00	2.358	3.44	1.42	3.8	96.2	0.0	1.72	0.56	0.68	0.88	3.09	12524	1588	8	0	0	0	0	logfile
✔	7V24	31636	2024-10-09	2021-08-07	3.29	3.50	—	3.4	0.006	0.80	0.0	0.05	13.64	0.00	2.164	12.03	0.24	11.3	88.7	0.0	-1.86	0.67	0.83	3.60	3.4	0.003	0.66	0.0	0.04	15.36	0.00	2.519	7.75	2.38	9.2	90.8	0.0	-0.97	0.38	0.65	0.83	3.68	3814	487	3	0	0	0	0	logfile
✔	7V22	31634	2024-10-09	2021-08-07	3.38	3.61	—	3.6	0.003	0.66	0.0	0.04	14.10	0.00	2.236	8.81	0.46	12.1	87.5	0.4	-2.81	0.53	0.77	4.24	3.6	0.003	0.72	0.0	0.05	15.68	0.00	2.458	10.62	1.38	12.1	87.5	0.4	-2.43	0.56	0.53	0.80	3.58	1958	240	1	0	0	0	0	logfile
✔	7RQS	24635	2024-10-10	2021-08-07	3.57	2.31	3.59	2.0	0.002	0.54	0.0	0.04	13.38	0.00	2.088	9.87	0.26	7.6	92.4	0.0	-0.91	0.70	0.68	2.53	2.0	0.004	0.63	0.0	0.04	15.48	0.00	1.962	9.61	2.24	8.6	91.3	0.1	-1.20	0.57	0.71	0.69	2.47	7792	1074	2	0	1	0	0	logfile
✔	7V21	31633	2024-10-12	2021-08-07	3.08	3.18	—	3.1	0.004	0.73	0.0	0.05	13.48	0.00	2.266	4.92	0.31	2.6	97.3	0.1	0.95	0.72	0.87	3.52	3.1	0.003	0.51	0.0	0.04	14.95	0.00	2.566	5.34	0.93	2.4	97.6	0.0	1.44	0.41	0.73	0.88	3.11	11903	1505	4	0	0	0	0	logfile
✔	7V1Z	31631	2024-10-12	2021-08-07	2.98	3.07	—	3.1	0.003	0.58	0.0	0.05	13.83	0.00	2.207	3.78	0.22	2.9	97.1	0.0	1.19	0.66	0.82	2.96	3.0	0.003	0.58	0.0	0.04	16.41	0.00	2.451	3.74	1.41	3.2	96.8	0.0	1.22	0.58	0.69	0.86	2.36	12588	1592	4	0	0	0	0	logfile
✔	7V27	31638	2024-10-09	2021-08-07	4.18	4.43	—	4.2	0.002	0.54	0.0	0.04	11.75	0.00	2.229	9.54	0.00	9.2	90.8	0.0	-4.40	0.85	0.80	—	4.2	0.004	0.74	0.0	0.05	12.10	0.00	2.443	14.71	0.00	11.8	88.2	0.0	-2.36	0.77	0.86	0.82	—	3252	421	4	0	1	0	0	logfile
✔	7RQ7	24629	2024-10-10	2021-08-05	3.95	4.02	—	4.0	0.005	0.95	0.0	0.05	14.60	0.01	2.353	6.68	0.31	5.8	94.2	0.0	-5.29	0.66	0.80	1.53	3.9	0.003	0.83	0.0	0.04	16.66	0.00	2.530	13.91	2.35	5.4	94.6	0.0	-0.31	1.18	0.67	0.80	1.01	6380	861	2	0	0	0	0	logfile
✔	7V1N	31628	2024-10-15	2021-08-05	3.2	3.33	—	3.2	0.013	1.21	4.0	0.07	19.76	0.01	1.973	28.52	16.75	20.1	78.9	1.0	-5.88	0.65	0.73	1.68	3.2	0.003	0.84	1.0	0.05	18.35	0.00	2.328	10.31	4.51	10.1	89.6	0.3	-2.82	0.62	0.66	0.75	1.77	19156	2403	2	0	0	0	0	logfile
✔	7PDD	13334	2024-10-09	2021-08-05	4.2	4.47	—	4.3	0.004	0.75	0.0	0.04	14.38	0.00	2.092	20.92	0.00	7.1	92.9	0.0	-4.11	0.79	0.75	—	4.3	0.003	0.80	0.0	0.05	13.73	0.00	2.322	14.99	0.00	5.8	94.2	0.0	-1.25	1.86	0.78	0.74	—	4516	577	2	0	0	0	0	logfile
✔	7PDF	13336	2024-10-10	2021-08-05	3.8	3.91	—	3.8	0.008	0.83	0.0	0.05	14.63	0.00	1.885	16.57	0.29	10.1	89.9	0.0	-4.24	0.81	0.83	1.65	3.8	0.004	0.73	0.0	0.04	16.66	0.00	2.048	11.23	2.30	4.9	95.1	0.0	-0.99	1.31	0.80	0.81	1.28	6427	794	3	0	2	0	0	logfile
✔	7PDH	13338	2024-10-09	2021-08-05	4.0	3.51	—	3.2	0.003	0.70	0.0	0.04	14.16	0.00	2.169	14.32	0.00	5.8	94.2	0.0	-1.07	0.79	0.69	—	3.2	0.003	0.69	0.0	0.04	16.31	0.00	2.468	11.74	2.50	5.6	94.4	0.0	-0.62	0.57	0.78	0.69	—	4516	577	2	0	0	0	0	logfile
✔	7PDG	13337	2024-10-10	2021-08-05	4.3	4.51	—	3.1	0.005	0.82	0.0	0.05	14.59	0.00	2.161	16.17	0.00	5.2	94.8	0.0	-0.49	0.58	0.72	—	3.1	0.004	0.76	0.0	0.04	14.77	0.00	2.425	12.24	0.00	4.8	95.2	0.0	-0.11	0.87	0.58	0.73	—	7642	970	2	0	0	0	0	logfile
✔	7FJP	31626	2024-10-10	2021-08-04	3.0	3.19	—	3.2	0.006	1.14	1.0	0.07	10.95	0.01	1.270	7.70	0.80	7.0	92.2	0.7	-4.60	0.71	0.81	3.22	3.1	0.004	0.79	0.0	0.04	14.53	0.00	1.928	6.66	2.28	6.5	93.3	0.2	-0.29	1.27	0.69	0.83	2.28	7239	983	2	0	4	0	0	logfile
✔	7RPX	24625	2024-10-12	2021-08-04	4.2	3.22	—	4.2	0.003	0.56	0.0	0.04	15.95	0.00	1.655	21.85	0.86	8.9	90.8	0.3	-2.44	0.71	0.61	—	4.1	0.003	0.74	0.0	0.05	17.02	0.00	2.094	14.07	0.00	9.6	90.1	0.2	-2.51	2.30	0.71	0.61	—	11754	1327	8	62	3	0	0	logfile
✔	7PD4	13330	2024-10-10	2021-08-04	4.9	4.13	—	7.8	0.005	0.87	0.0	0.05	14.59	0.00	2.035	38.59	0.00	11.7	88.3	0.0	-4.80	0.73	0.72	—	7.9	0.003	0.82	0.0	0.04	13.41	0.00	2.381	13.24	0.00	4.1	95.9	0.0	-0.25	0.98	0.73	0.72	—	6676	842	1	0	0	0	0	logfile
✔	7PD8	13331	2024-10-10	2021-08-04	4.2	4.36	—	4.2	0.009	1.08	0.0	0.05	15.65	0.01	2.003	34.24	1.09	11.2	88.8	0.0	-4.82	0.59	0.78	—	4.2	0.003	0.78	0.0	0.04	14.34	0.00	2.418	14.60	0.00	4.6	95.4	0.0	-0.67	1.47	0.58	0.74	—	7642	970	2	0	0	0	0	logfile

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