Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7FJQ	31627	2024-10-10	2021-08-04	3.6	3.86	—	3.8	0.019	2.03	44.0	0.17	13.67	0.01	1.980	10.56	6.77	10.2	88.1	1.7	-3.67	0.64	0.75	1.76	3.8	0.003	0.80	0.0	0.04	14.77	0.01	2.511	8.58	2.07	8.4	91.3	0.3	-1.28	0.72	0.64	0.80	0.43	7086	973	2	0	1	0	0	logfile
✔	7RPW	24624	2024-10-11	2021-08-04	4.38	4.64	—	4.4	0.003	0.57	0.0	0.04	19.29	0.00	1.756	18.05	9.97	11.3	88.6	0.1	-2.82	0.77	0.68	—	4.4	0.003	0.69	0.0	0.04	18.97	0.00	1.102	15.02	0.00	10.4	89.5	0.1	-2.97	3.75	0.77	0.68	—	10594	1179	10	62	5	0	0	logfile
✔	7FJP	31626	2024-10-10	2021-08-04	3.0	3.19	—	3.2	0.006	1.14	1.0	0.07	10.95	0.01	1.270	7.70	0.80	7.0	92.2	0.7	-4.60	0.71	0.81	3.22	3.1	0.004	0.79	0.0	0.04	14.53	0.00	1.928	6.66	2.28	6.5	93.3	0.2	-0.29	1.27	0.69	0.83	2.28	7239	983	2	0	4	0	0	logfile
✔	7RP5	24612	2024-10-10	2021-08-03	3.72	3.93	—	3.9	0.005	1.01	0.0	0.05	14.74	0.01	2.346	4.77	0.46	5.7	94.3	0.0	-4.74	0.68	0.81	1.10	3.9	0.004	0.73	0.0	0.04	16.27	0.00	2.324	11.03	3.64	5.2	94.8	0.0	0.30	0.43	0.69	0.81	0.80	6578	883	2	0	0	0	0	logfile
✘	7RPo	24618	2024-10-11	2021-08-03	4.16	2.77	—	1.8	0.003	0.50	0.0	0.04	16.98	0.00	1.759	6.97	1.64	8.5	91.5	0.0	-2.01	0.74	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10602	1179	9	62	5	0	0	logfile
✔	7RP6	24613	2024-10-10	2021-08-03	3.78	3.85	—	3.8	0.006	0.96	0.0	0.06	14.85	0.01	2.334	5.72	0.59	5.7	94.3	0.0	-4.72	0.69	0.82	1.37	3.8	0.003	0.69	0.0	0.04	16.67	0.00	2.513	9.26	4.28	4.1	95.9	0.0	-0.20	1.16	0.67	0.82	0.48	6753	900	2	0	0	0	0	logfile
✔	7RPi	24615	2024-10-11	2021-08-03	2.5	2.74	2.62	2.8	0.016	1.82	2.0	0.11	14.73	0.01	2.170	0.93	0.12	2.0	98.0	0.0	-0.69	0.50	0.73	4.35	2.8	0.003	0.64	0.0	0.04	13.43	0.00	2.247	5.09	0.86	1.2	98.8	0.0	2.07	0.52	0.60	0.83	2.82	8526	926	2	0	35	43	0	logfile
✔	7PBZ	13314	2024-10-13	2021-08-03	2.79	3.47	2.89	3.2	0.004	0.77	0.0	0.12	15.13	0.01	2.136	4.25	0.00	2.9	97.1	0.0	0.33	0.75	0.86	5.20	3.2	0.004	0.65	0.0	0.04	14.80	0.00	2.504	4.52	1.21	2.3	97.7	0.0	0.97	0.44	0.75	0.87	4.86	14822	1773	17	0	37	0	0	logfile
✔	7RPH	24614	2024-10-11	2021-08-03	2.5	2.68	2.59	2.7	0.017	1.89	4.0	0.12	15.18	0.01	1.952	2.03	0.61	2.1	97.9	0.0	-0.70	0.53	0.76	4.93	2.7	0.003	0.62	0.0	0.04	14.04	0.00	2.183	4.46	2.33	1.7	98.3	0.0	2.01	1.28	0.66	0.85	3.15	8573	926	2	0	36	86	0	logfile
✔	7PCH	13320	2024-10-11	2021-08-03	2.89	3.82	2.93	3.4	0.012	1.54	0.0	0.10	13.62	0.01	2.343	0.97	0.55	3.7	96.3	0.0	1.22	0.89	0.83	3.70	3.4	0.003	0.66	0.0	0.04	14.32	0.00	2.465	4.18	0.64	1.0	99.0	0.0	2.50	0.90	0.92	0.91	3.74	10798	1254	16	0	4	510	0	logfile
✔	7PC0	13315	2024-10-14	2021-08-03	3.0	3.74	3.11	3.5	0.004	0.74	0.0	0.23	15.41	0.00	2.001	4.66	0.00	5.6	94.4	0.0	-0.52	0.77	0.84	4.05	3.5	0.004	0.72	0.0	0.04	15.60	0.00	2.526	7.12	1.12	4.7	95.3	0.0	0.33	0.94	0.77	0.86	3.66	15748	1911	17	0	26	0	0	logfile
✔	7RPK	24617	2024-10-11	2021-08-03	2.7	2.92	2.71	2.9	0.015	1.75	1.0	0.10	14.86	0.01	1.695	0.59	0.21	3.0	97.0	0.0	0.02	0.63	0.80	4.47	2.9	0.002	0.59	0.0	0.04	14.02	0.00	2.233	4.56	1.76	2.4	97.6	0.0	2.44	0.99	0.69	0.86	3.87	10018	1104	5	0	40	42	0	logfile
✔	7PCQ	13325	2024-10-10	2021-08-03	3.62	4.96	3.71	4.1	0.013	1.55	0.0	0.10	13.62	0.01	2.557	1.30	0.78	2.8	97.2	0.0	1.72	0.91	0.78	1.86	4.1	0.004	0.73	0.0	0.04	14.67	0.00	2.482	10.18	1.43	1.2	98.8	0.0	2.40	2.21	0.93	0.88	1.79	7350	911	9	0	4	0	0	logfile
✔	7RPJ	24616	2024-10-10	2021-08-03	3.2	3.54	3.29	3.6	0.014	1.72	5.0	0.10	13.32	0.01	2.458	3.51	0.98	4.5	95.4	0.1	-1.66	0.57	0.65	2.39	3.6	0.003	0.66	0.0	0.04	13.87	0.00	2.398	7.27	1.60	2.2	97.8	0.0	1.67	1.10	0.65	0.81	1.61	7926	926	2	0	19	0	0	logfile
✔	7FJD	31618	2024-10-10	2021-08-03	3.2	2.83	—	3.2	0.011	1.24	0.0	0.07	11.94	0.01	2.229	3.02	0.87	8.9	90.9	0.2	-3.57	0.65	0.82	3.85	3.2	0.002	0.61	0.0	0.04	15.11	0.00	2.492	3.75	3.37	6.2	93.8	0.0	0.13	2.30	0.64	0.82	2.63	8352	1058	10	0	2	0	0	logfile
✔	7FJE	31619	2024-10-10	2021-08-03	3.0	2.96	—	3.2	0.010	1.19	0.0	0.07	11.62	0.01	2.287	2.42	0.97	7.9	91.8	0.3	-3.03	0.76	0.84	4.04	3.2	0.005	0.74	0.0	0.05	15.65	0.00	2.362	2.91	3.56	7.1	92.8	0.1	0.14	1.31	0.75	0.85	2.74	8338	1058	9	0	1	0	0	logfile
✔	7FJF	31620	2024-10-10	2021-08-03	3.1	2.99	—	3.2	0.010	1.34	0.0	0.07	12.22	0.01	2.256	4.88	1.73	8.9	90.8	0.3	-3.59	0.60	0.76	2.76	3.2	0.003	0.65	0.0	0.04	15.13	0.00	2.478	3.92	2.80	4.8	95.1	0.1	0.32	2.41	0.64	0.83	3.12	8377	1058	10	0	2	0	0	logfile
✔	7RoZ	24610	2024-10-10	2021-08-02	3.1	3.60	—	3.3	0.003	0.54	0.0	0.04	13.57	0.01	2.064	11.67	0.00	6.8	93.2	0.0	-1.53	0.82	0.75	2.82	3.3	0.003	0.66	0.0	0.04	15.56	0.00	2.044	11.54	1.58	7.4	92.6	0.0	-0.99	1.17	0.85	0.82	2.67	7774	1064	2	0	1	0	0	logfile
✔	7PBD	13290	2024-10-13	2021-08-02	3.04	3.81	3.11	3.5	0.005	0.76	0.0	0.10	16.57	0.00	2.062	4.44	0.00	3.8	96.2	0.0	0.14	0.77	0.82	3.43	3.5	0.003	0.61	0.0	0.04	14.17	0.00	2.461	5.01	1.39	3.2	96.8	0.1	0.91	0.41	0.78	0.85	3.13	14822	1784	15	0	25	0	0	logfile
✔	7PBJ	13293	2024-10-12	2021-08-02	3.4	3.54	3.40	3.2	0.018	2.20	140.0	0.13	19.50	0.01	0.650	29.74	11.71	2.5	96.9	0.6	1.69	0.71	0.67	2.07	3.2	0.003	0.69	0.0	0.04	17.52	0.00	1.923	11.13	1.53	3.4	96.5	0.1	1.31	3.41	0.88	0.85	1.84	59486	8015	42	0	28	14	0	logfile

• ← previous
• Page 304 of 460
• next →