Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UR8	42487	2024-10-14	2023-10-25	2.97	3.69	3.09	3.5	0.006	0.64	0.0	0.05	13.53	0.00	2.241	4.99	0.00	2.7	97.3	0.0	-0.82	0.84	0.86	3.75	3.5	0.005	0.56	0.0	0.04	15.31	0.00	2.477	6.21	0.62	2.7	97.3	0.0	0.97	0.55	0.84	0.86	3.66	18752	2316	4	0	0	0	0	logfile
✔	8UR5	42482	2024-10-09	2023-10-25	3.7	3.90	2.45	4.0	0.011	1.45	0.0	0.09	9.30	0.01	2.011	6.45	1.71	4.3	95.2	0.4	-0.71	0.66	0.72	3.62	3.9	0.002	0.68	0.0	0.04	12.65	0.00	2.614	4.70	2.85	2.9	96.4	0.7	-0.28	1.63	0.68	0.79	3.19	4989	696	6	0	12	0	0	logfile
✔	8QX9	18715	2024-10-09	2023-10-24	3.76	3.94	3.62	4.3	0.014	2.17	0.0	0.11	18.79	0.01	2.496	2.80	0.00	2.3	97.7	0.0	-4.75	0.50	0.70	3.13	4.3	0.004	0.93	0.0	0.04	19.90	0.00	2.530	16.78	2.59	3.5	96.5	0.0	-4.76	2.17	0.48	0.75	3.84	3696	540	12	0	0	0	0	logfile
✔	8QXo	18734	2024-10-13	2023-10-24	3.43	3.56	3.52	3.5	0.003	0.63	0.0	0.04	16.43	0.01	1.759	4.94	0.13	3.0	96.9	0.1	0.60	0.64	0.70	1.63	3.5	0.003	0.60	0.0	0.04	17.81	0.00	1.896	4.62	2.43	4.8	95.2	0.0	0.77	0.88	0.77	0.82	1.94	14291	1747	8	0	14	0	0	logfile
✔	8QXB	18717	2024-10-09	2023-10-24	3.86	3.89	3.45	4.3	0.014	2.28	0.0	0.11	18.19	0.01	2.508	1.77	0.00	2.3	97.7	0.0	-3.90	0.53	0.71	2.65	4.2	0.006	0.92	0.0	0.04	18.74	0.00	2.560	14.73	4.41	6.1	93.9	0.0	-4.89	3.44	0.54	0.78	2.55	5544	810	18	0	0	0	0	logfile
✔	8WW2	37881	2024-10-10	2023-10-24	2.79	3.00	2.84	3.1	0.004	0.71	0.0	0.05	13.76	0.00	1.809	4.15	0.00	3.5	96.5	0.0	0.09	0.66	0.80	2.96	3.1	0.002	0.52	0.0	0.04	15.70	0.00	2.596	2.40	1.11	2.5	97.5	0.0	1.48	0.34	0.64	0.81	2.39	7792	1020	6	0	3	2	0	logfile
✔	8QXM	18732	2024-10-13	2023-10-24	2.94	3.04	3.00	3.0	0.003	0.63	0.0	0.04	17.60	0.01	1.812	2.88	0.00	4.1	95.9	0.0	0.06	0.77	0.83	2.81	3.0	0.004	0.64	0.0	0.05	18.03	0.00	1.783	3.44	2.05	4.1	95.9	0.0	0.47	1.15	0.77	0.85	2.73	14658	1784	8	0	24	0	0	logfile
✔	8QXK	18730	2024-10-13	2023-10-24	2.66	2.75	2.70	2.7	0.003	0.74	0.0	0.05	17.51	0.00	1.965	3.56	0.00	2.4	97.6	0.0	-0.20	0.76	0.81	4.69	2.7	0.003	0.61	0.0	0.04	17.73	0.00	1.953	3.47	2.04	2.2	97.7	0.1	0.67	0.36	0.75	0.85	4.20	15323	1832	8	0	28	0	0	logfile
✔	8QXN	18733	2024-10-13	2023-10-24	2.98	3.14	3.09	3.1	0.003	0.61	0.0	0.05	17.34	0.00	1.867	4.09	0.07	3.9	96.1	0.0	0.87	0.68	0.73	1.57	3.1	0.003	0.63	0.0	0.04	18.13	0.00	1.883	4.40	1.54	4.4	95.6	0.1	1.04	1.76	0.76	0.83	2.04	14461	1760	8	0	22	0	0	logfile
✔	8QXA	18716	2024-10-09	2023-10-24	4.05	3.51	3.78	4.2	0.014	2.24	0.0	0.10	18.94	0.01	2.420	4.19	0.00	3.5	96.5	0.0	-4.36	0.51	0.75	—	4.2	0.004	0.84	0.0	0.04	14.32	0.00	2.541	15.94	0.00	8.5	91.5	0.0	-4.42	1.43	0.44	0.70	—	3696	540	12	0	0	0	0	logfile
✘	8UPT	42455	2024-10-09	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1518	0	1	71	0	0	0	logfile
✔	8UQK	42472	2024-10-10	2023-10-23	4.61	6.61	4.59	5.7	0.003	0.86	0.0	0.04	13.61	0.01	2.184	21.41	0.00	6.5	93.4	0.1	-2.07	0.86	0.72	—	5.7	0.003	0.78	0.0	0.04	14.24	0.01	2.483	13.93	0.00	7.9	91.9	0.2	-2.61	2.65	0.84	0.67	—	7318	962	2	0	0	0	0	logfile
✔	8WV5	37865	2024-10-14	2023-10-23	3.5	3.56	3.55	3.6	0.002	0.47	0.0	0.04	12.21	0.00	1.812	6.94	0.00	1.6	98.4	0.0	-3.38	0.81	0.85	3.23	3.5	0.004	0.67	0.0	0.05	15.19	0.00	2.207	7.28	2.00	2.5	97.5	0.0	-1.24	1.65	0.82	0.88	3.38	16340	2060	20	0	20	0	0	logfile
✔	8UPY	42457	2024-10-09	2023-10-23	2.8	3.43	3.00	2.9	0.012	1.65	0.0	0.12	28.73	0.01	1.040	88.62	0.00	0.0	0.0	0.0	—	0.18	0.52	—	2.9	0.006	0.78	0.0	0.04	27.49	0.01	2.036	25.14	0.00	0.0	0.0	0.0	—	1.07	0.22	0.75	—	1532	0	1	72	0	0	0	logfile
✔	8UQi	42469	2024-10-10	2023-10-23	4.5	7.64	4.73	6.8	0.003	0.84	0.0	0.04	13.62	0.01	2.118	24.94	0.13	7.6	92.4	0.0	-1.83	0.90	0.79	—	6.9	0.004	0.91	0.0	0.05	14.20	0.01	2.237	20.25	0.00	5.5	93.5	0.9	-0.41	3.90	0.86	0.68	—	7318	962	2	0	0	0	0	logfile
✔	8UQ6	42462	2024-10-12	2023-10-23	3.6	5.71	2.81	39.0	0.016	2.36	10.0	0.13	16.35	0.02	2.502	1.87	5.96	23.5	71.6	4.9	-4.36	0.19	0.00	0.38	5.5	0.004	0.87	0.0	0.05	16.60	0.01	2.351	7.50	2.38	20.0	79.5	0.5	-3.96	2.37	0.22	0.15	0.07	11700	765	1	0	0	0	5689	logfile
✔	8WV4	37864	2024-10-10	2023-10-23	3.3	3.25	3.29	3.3	0.002	0.49	0.0	0.04	14.13	0.00	1.938	5.08	3.33	1.0	99.0	0.0	-2.63	0.74	0.84	4.40	3.3	0.003	0.58	0.0	0.05	15.18	0.00	2.321	6.26	1.78	2.2	97.8	0.0	-0.85	1.17	0.75	0.86	3.88	8170	1030	10	0	10	0	0	logfile
✘	8UPF	42446	2024-10-14	2023-10-22	3.2	3.76	3.25	3.6	0.007	0.65	0.0	0.04	26.92	0.00	1.329	10.34	0.47	4.3	95.7	0.0	-2.24	0.79	0.83	2.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14012	1006	13	293	2	0	0	logfile
✔	8UPH	42448	2024-10-10	2023-10-22	4.13	4.91	4.16	4.4	0.004	0.71	0.0	0.04	14.18	0.02	2.236	13.34	0.12	2.3	97.6	0.1	-0.18	0.89	0.85	—	4.4	0.003	0.67	0.0	0.04	14.37	0.01	2.503	9.22	0.00	3.0	97.0	0.0	-0.14	0.88	0.90	0.86	—	8121	1054	4	0	2	0	0	logfile
✔	8WUX	37863	2024-10-12	2023-10-21	2.6	3.34	2.85	3.1	0.003	0.63	0.0	0.04	16.06	0.00	2.017	6.83	1.06	2.4	97.5	0.1	0.85	0.84	0.89	3.12	3.0	0.003	0.67	0.0	0.04	15.47	0.00	2.043	7.01	1.93	2.7	97.2	0.1	1.30	0.86	0.85	0.91	2.63	61026	8050	35	0	35	0	0	logfile

• ← previous
• Page 44 of 459
• next →