Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WUW	37862	2024-10-13	2023-10-21	2.6	3.26	2.77	3.0	0.002	0.58	0.0	0.04	17.05	0.00	2.007	7.82	1.18	2.5	97.5	0.0	1.36	0.83	0.83	2.94	3.0	0.002	0.64	0.0	0.04	16.38	0.00	1.991	7.29	1.89	2.8	97.2	0.0	1.48	1.56	0.84	0.90	2.36	64841	8540	42	0	35	0	0	logfile
✔	8WUX	37863	2024-10-12	2023-10-21	2.6	3.34	2.85	3.1	0.003	0.63	0.0	0.04	16.06	0.00	2.017	6.83	1.06	2.4	97.5	0.1	0.85	0.84	0.89	3.12	3.0	0.003	0.67	0.0	0.04	15.47	0.00	2.043	7.01	1.93	2.7	97.2	0.1	1.30	0.86	0.85	0.91	2.63	61026	8050	35	0	35	0	0	logfile
✔	8UoP	42435	2024-10-12	2023-10-20	3.8	3.97	3.89	3.8	0.005	0.91	0.0	0.04	16.45	0.01	1.954	17.97	0.73	15.7	83.6	0.7	-3.60	0.18	0.15	0.40	3.9	0.003	0.65	0.0	0.04	17.06	0.00	2.263	11.38	3.37	12.6	87.1	0.3	-3.11	0.92	0.24	0.23	0.07	13188	872	2	0	0	0	6544	logfile
✔	8UoY	42441	2024-10-12	2023-10-20	3.4	3.52	3.51	3.4	0.016	2.25	10.0	0.11	17.12	0.02	2.532	0.83	6.89	12.1	85.3	2.6	-3.89	0.21	0.24	0.07	3.4	0.003	0.74	0.0	0.04	17.61	0.00	2.251	11.83	6.01	10.6	89.2	0.2	-3.21	0.86	0.22	0.25	0.30	13188	872	2	0	0	0	6544	logfile
✔	8UP1	42442	2024-10-10	2023-10-20	4.55	3.74	4.59	4.7	0.009	1.48	0.0	0.06	6.87	0.01	2.606	0.00	0.00	1.5	98.5	0.0	0.31	0.79	0.80	—	4.7	0.005	0.81	0.0	0.04	5.64	0.00	2.032	5.91	0.00	8.1	91.9	0.0	1.79	2.25	0.81	0.84	—	7088	1428	4	0	0	0	0	logfile
✔	8WUC	37853	2024-10-13	2023-10-20	2.5	3.09	2.46	2.9	0.004	0.67	0.0	0.04	16.60	0.00	1.940	9.89	1.01	1.5	98.5	0.0	0.80	0.84	0.87	2.89	2.9	0.005	0.81	0.0	0.05	16.61	0.00	1.885	9.32	1.49	1.7	98.3	0.0	0.82	0.42	0.86	0.91	2.87	65338	8708	42	0	28	0	0	logfile
✔	8WUA	37852	2024-10-09	2023-10-20	3.6	4.37	3.76	4.3	0.004	0.75	0.0	0.04	15.35	0.01	2.105	8.78	0.49	5.8	94.2	0.0	0.31	0.49	0.58	0.41	4.3	0.003	0.74	0.0	0.04	16.95	0.00	2.577	8.87	2.96	6.1	93.9	0.0	0.48	1.82	0.54	0.69	1.15	5494	675	1	0	0	0	0	logfile
✔	8WU4	37850	2024-10-11	2023-10-20	3.3	3.97	3.44	3.7	0.002	0.53	0.0	0.04	13.98	0.00	2.254	7.48	0.09	0.7	99.3	0.0	1.79	0.90	0.89	1.51	3.7	0.002	0.52	0.0	0.04	14.88	0.00	2.524	7.46	1.43	1.1	98.9	0.0	2.03	0.28	0.91	0.89	1.20	54670	7364	14	0	0	0	0	logfile
✔	8WUi	37855	2024-10-13	2023-10-20	3.4	3.66	3.48	3.7	0.006	0.84	0.0	0.05	19.52	0.01	1.049	21.56	5.09	6.2	93.0	0.7	-1.15	0.56	0.68	1.43	3.7	0.003	0.70	0.0	0.04	18.47	0.00	2.524	11.89	3.19	5.0	94.5	0.4	-0.06	0.71	0.57	0.76	1.45	15340	1826	8	0	14	0	0	logfile
✔	8QWE	18693	2024-10-12	2023-10-19	3.14	3.37	3.20	3.4	0.005	0.60	0.0	0.04	20.60	0.00	2.028	6.30	0.00	4.7	95.3	0.0	-0.57	0.73	0.85	2.66	3.4	0.003	0.56	0.0	0.04	20.78	0.00	2.006	6.30	2.84	7.3	92.7	0.0	-0.30	0.30	0.72	0.85	2.71	11721	1185	6	88	5	0	0	logfile
✔	8WU1	37849	2024-10-10	2023-10-19	3.2	3.40	3.17	3.4	0.008	0.62	0.0	0.04	11.92	0.00	2.208	7.36	0.00	4.5	95.5	0.0	-0.58	0.66	0.79	3.60	3.4	0.002	0.59	0.0	0.04	13.94	0.00	2.582	6.36	1.30	2.2	97.8	0.0	0.29	0.36	0.65	0.78	3.10	7250	1014	5	0	1	0	0	logfile
✔	8UNU	42417	2024-10-10	2023-10-19	3.5	3.84	3.62	3.8	0.005	0.83	0.0	0.05	14.14	0.00	2.227	6.74	0.50	1.5	98.5	0.0	1.67	0.63	0.83	2.91	3.8	0.002	0.50	0.0	0.04	15.15	0.00	2.513	3.13	2.01	1.3	98.7	0.0	1.81	0.39	0.64	0.84	2.53	6514	890	6	0	2	0	0	logfile
✔	8WTW	37844	2024-10-09	2023-10-19	2.8	2.97	2.89	3.0	0.003	0.48	0.0	0.04	16.20	0.00	2.289	3.87	0.21	2.3	97.7	0.0	-1.28	0.64	0.89	2.80	3.0	0.002	0.48	0.0	0.04	16.90	0.00	2.297	2.10	1.68	2.0	98.0	0.0	1.84	0.36	0.61	0.87	2.15	4531	565	5	0	4	0	0	logfile
✔	8UNV	42418	2024-10-10	2023-10-19	3.3	3.79	3.62	3.8	0.006	0.87	0.0	0.06	14.50	0.00	2.201	4.63	0.34	2.0	98.0	0.0	0.91	0.65	0.85	3.31	3.7	0.004	0.58	0.0	0.04	14.77	0.00	2.408	3.27	1.53	2.5	97.4	0.1	1.18	0.37	0.60	0.84	2.78	6591	911	6	0	2	0	0	logfile
✔	8UNN	42410	2024-10-10	2023-10-19	3.4	3.72	3.46	3.7	0.005	0.67	0.0	0.04	13.92	0.00	2.221	4.22	0.00	1.4	98.6	0.0	0.86	0.65	0.86	3.18	3.7	0.002	0.50	0.0	0.04	14.96	0.00	2.422	2.76	1.75	1.1	98.9	0.0	1.27	0.32	0.67	0.86	2.53	6503	901	6	0	2	1	0	logfile
✔	8UNR	42414	2024-10-10	2023-10-19	3.4	3.68	3.45	3.7	0.005	0.79	0.0	0.05	13.75	0.00	1.950	4.40	0.00	2.3	97.7	0.0	0.99	0.66	0.86	3.46	3.7	0.002	0.49	0.0	0.04	15.11	0.00	2.475	2.83	2.35	1.7	98.3	0.0	1.55	0.94	0.65	0.86	2.65	6670	919	6	0	2	2	0	logfile
✔	8WTZ	37847	2024-10-13	2023-10-19	3.1	3.40	3.16	3.4	0.006	0.85	2.0	0.06	18.20	0.01	1.650	12.99	2.15	1.5	98.0	0.6	0.13	0.59	0.77	1.87	3.4	0.003	0.62	0.0	0.04	17.38	0.00	2.556	7.46	2.15	2.1	97.8	0.1	1.63	1.37	0.55	0.77	1.69	14930	1778	8	0	15	0	0	logfile
✔	8UNT	42416	2024-10-10	2023-10-19	3.4	3.76	3.55	3.7	0.005	0.81	0.0	0.05	14.50	0.00	2.232	5.13	0.32	1.4	98.6	0.0	1.29	0.64	0.84	2.66	3.7	0.002	0.49	0.0	0.04	15.18	0.00	2.511	2.72	2.43	1.2	98.8	0.0	1.64	0.38	0.65	0.85	2.30	6712	913	6	0	2	1	0	logfile
✔	8Uo0	42423	2024-10-10	2023-10-19	3.5	4.01	3.77	4.0	0.006	0.93	0.0	0.06	13.94	0.01	2.268	5.98	0.21	2.5	97.5	0.0	1.21	0.61	0.80	1.82	4.0	0.002	0.49	0.0	0.04	14.61	0.00	2.516	3.21	4.11	2.0	98.0	0.0	1.82	0.33	0.63	0.82	1.65	6222	902	6	0	2	0	0	logfile
✔	8UNZ	42422	2024-10-10	2023-10-19	3.8	4.17	3.92	4.1	0.005	0.81	0.0	0.06	13.67	0.00	2.238	4.96	0.00	2.4	97.6	0.0	1.00	0.61	0.78	1.40	4.1	0.003	0.52	0.0	0.04	14.66	0.00	2.492	3.36	0.93	2.2	97.8	0.0	1.21	0.34	0.66	0.83	1.43	6329	898	6	0	2	0	0	logfile

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