Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QT9	18646	2024-10-09	2023-10-12	2.36	2.58	2.35	2.6	0.005	0.68	0.0	0.04	20.32	0.00	2.158	5.55	0.58	1.3	98.7	0.0	0.58	0.62	0.80	3.59	2.6	0.003	0.61	0.0	0.04	19.18	0.00	2.551	4.23	1.44	2.0	98.0	0.0	1.68	0.19	0.61	0.79	3.65	3511	399	2	0	4	64	0	logfile
✔	8QT6	18644	2024-10-09	2023-10-12	2.29	2.56	2.40	2.6	0.004	0.60	0.0	0.04	18.31	0.00	2.174	4.72	0.86	1.8	98.2	0.0	0.77	0.66	0.84	3.87	2.6	0.003	0.64	0.0	0.04	18.41	0.00	2.556	3.24	1.44	2.0	98.0	0.0	1.50	0.23	0.59	0.80	3.79	3466	399	2	0	3	63	0	logfile
✔	8QT7	18645	2024-10-09	2023-10-12	2.2	2.42	2.27	2.4	0.009	0.96	0.0	0.04	19.30	0.00	2.169	4.96	0.86	1.8	98.2	0.0	1.00	0.61	0.80	4.04	2.4	0.003	0.61	0.0	0.04	19.31	0.00	2.498	3.79	0.86	1.8	98.2	0.0	1.70	3.68	0.60	0.79	3.77	3516	399	2	0	4	65	0	logfile
✔	8QTA	18647	2024-10-09	2023-10-12	2.64	2.83	2.66	2.8	0.009	0.97	0.0	0.04	20.12	0.00	2.155	7.45	1.16	2.5	97.5	0.0	-0.55	0.61	0.80	3.80	2.8	0.003	0.70	0.0	0.04	19.53	0.00	2.482	6.14	1.73	3.0	97.0	0.0	0.81	0.26	0.59	0.79	3.95	3472	399	2	0	4	27	0	logfile
✔	8WQW	37756	2024-10-13	2023-10-12	3.27	2.51	3.28	1.9	0.005	0.70	0.0	0.05	13.42	0.01	2.125	9.31	0.10	5.2	94.8	0.0	-0.92	0.71	0.67	2.47	1.8	0.004	0.72	0.0	0.05	15.52	0.01	2.587	9.42	2.73	6.5	93.5	0.0	-0.96	1.03	0.74	0.72	2.12	8972	1174	8	0	5	0	0	logfile
✔	8WQR	37752	2024-10-11	2023-10-12	3.08	4.11	3.07	3.5	0.003	0.58	0.0	0.04	12.19	0.00	2.166	13.13	0.00	6.8	93.0	0.2	-2.46	0.81	0.66	1.89	3.5	0.003	0.67	0.0	0.05	14.07	0.00	2.580	10.26	1.61	7.0	92.9	0.1	-2.57	0.44	0.82	0.68	1.72	9681	1415	2	0	0	0	0	logfile
✔	8QTD	18649	2024-10-09	2023-10-12	3.6	3.77	3.60	3.8	0.002	0.49	0.0	0.04	9.32	0.00	2.298	6.23	2.63	4.5	95.5	0.0	0.45	0.56	0.79	3.01	3.8	0.003	0.59	0.0	0.04	13.28	0.00	2.470	7.03	2.63	4.5	95.5	0.0	-0.16	0.89	0.56	0.80	3.16	3219	413	3	0	0	0	0	logfile
✔	8WQi	37746	2024-10-09	2023-10-11	3.5	3.71	3.53	3.7	0.003	0.62	0.0	0.04	14.51	0.00	2.188	9.29	0.00	10.2	89.8	0.0	-1.75	0.63	0.82	1.38	3.7	0.003	0.66	0.0	0.04	16.79	0.00	2.443	11.56	1.46	8.9	91.1	0.0	-0.36	0.53	0.65	0.80	0.91	5074	644	2	0	0	0	0	logfile
✔	8QSQ	18639	2024-10-10	2023-10-11	3.7	4.53	6.42	3.8	0.002	0.46	0.0	0.04	10.95	0.00	2.268	4.09	1.15	3.2	96.8	0.0	-1.43	0.64	0.73	0.69	3.6	0.004	0.77	0.0	0.04	14.41	0.00	2.498	22.89	1.58	5.0	95.0	0.0	-0.37	2.40	0.64	0.74	0.72	6512	791	3	0	6	0	0	logfile
✔	8QSR	18640	2024-10-12	2023-10-11	2.56	2.17	2.57	2.6	0.004	0.57	0.0	0.04	10.42	0.00	2.160	4.50	0.34	1.8	98.2	0.0	1.81	0.73	0.69	2.56	2.1	0.007	0.69	0.0	0.05	13.73	0.01	2.310	8.07	0.51	2.9	97.1	0.0	1.03	1.25	0.76	0.74	3.15	11746	766	4	0	2	0	5938	logfile
✔	8WQD	37740	2024-10-09	2023-10-11	3.55	3.74	3.53	3.7	0.004	0.62	0.0	0.04	14.56	0.01	2.266	8.72	0.00	6.9	93.1	0.0	-0.78	0.67	0.83	2.91	3.7	0.003	0.53	0.0	0.04	16.80	0.00	2.532	9.02	2.19	6.1	93.9	0.0	0.45	0.33	0.68	0.83	1.82	5046	641	2	0	0	0	0	logfile
✔	8QSL	18635	2024-10-11	2023-10-10	2.81	3.65	2.98	3.5	0.004	0.67	0.0	0.04	15.58	0.00	1.968	13.05	0.12	8.7	91.3	0.0	1.51	0.61	0.78	1.49	3.5	0.004	0.94	0.0	0.05	15.87	0.00	2.487	11.27	2.44	7.1	92.9	0.0	0.96	1.19	0.58	0.77	1.29	8506	1046	4	0	16	0	0	logfile
✔	8QSM	18636	2024-10-09	2023-10-10	3.69	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.88	0.0	0.04	15.71	0.00	2.477	14.37	4.83	3.5	96.5	0.0	1.84	1.45	0.56	0.78	1.11	3579	464	1	0	0	0	0	logfile
✘	8WPF	37715	2024-10-14	2023-10-10	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16896	1908	11	73	1	0	0	logfile
✔	8WPP	37722	2024-10-14	2023-10-10	3.1	3.23	3.06	3.2	0.005	0.84	0.0	0.05	17.00	0.01	2.245	5.50	0.06	3.0	97.0	0.0	-1.85	0.70	0.74	2.73	3.2	0.004	0.64	0.0	0.04	18.47	0.00	2.321	12.33	1.37	3.1	96.9	0.0	-0.08	0.51	0.72	0.82	2.98	16826	1909	9	69	0	0	0	logfile
✔	8UiN	42300	2024-10-10	2023-10-10	3.86	4.18	3.93	4.1	0.003	0.53	0.0	0.04	14.53	0.00	2.178	9.14	0.07	3.7	96.2	0.1	0.38	0.78	0.79	1.85	4.1	0.005	0.68	0.0	0.04	16.15	0.00	2.471	9.85	2.74	3.7	96.2	0.1	0.09	0.42	0.81	0.83	1.49	28249	3746	12	0	5	0	0	logfile
✘	8QSN	18637	2024-10-09	2023-10-10	3.54	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3579	464	1	0	0	0	0	logfile
✔	8UiP	42301	2024-10-09	2023-10-10	4.3	2.81	4.26	5.6	0.004	0.79	0.0	0.04	16.55	0.01	2.087	25.91	0.00	13.1	86.9	0.0	-2.49	0.41	0.55	—	5.1	0.003	0.75	0.0	0.04	14.33	0.00	2.568	14.63	0.00	8.4	91.6	0.0	-2.17	2.12	0.41	0.54	—	2316	303	3	0	0	0	0	logfile
✔	8WPU	37724	2024-10-14	2023-10-10	3.1	2.87	—	3.2	0.004	0.59	0.0	0.04	16.87	0.00	2.163	9.80	0.00	4.6	95.4	0.0	-0.69	0.76	0.82	2.08	3.3	0.007	0.68	0.0	0.05	16.31	0.00	2.288	8.84	3.66	6.6	93.4	0.0	-0.80	0.37	0.76	0.84	2.19	18794	2455	10	0	22	0	0	logfile
✘	8WPK	37717	2024-10-14	2023-10-10	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16854	1909	11	70	1	0	0	logfile

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