Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UiC	42292	2024-10-11	2023-10-10	3.54	3.85	3.66	3.9	0.007	0.97	1.0	0.06	16.03	0.00	2.082	6.84	1.99	9.2	90.8	0.0	-1.75	0.71	0.80	1.94	3.9	0.004	0.67	0.0	0.04	17.34	0.00	2.126	8.28	3.34	8.2	91.8	0.0	-0.26	0.41	0.73	0.81	1.67	9971	1227	3	0	2	0	0	logfile
✔	8UiB	42291	2024-10-12	2023-10-10	3.21	3.49	3.22	3.5	0.006	0.92	4.0	0.06	15.06	0.01	2.018	10.10	0.84	7.1	92.9	0.0	-2.75	0.73	0.77	2.36	3.5	0.003	0.65	0.0	0.04	16.55	0.00	2.001	11.15	1.60	4.9	95.1	0.0	-0.62	0.30	0.73	0.79	1.75	11868	1533	4	0	2	0	0	logfile
✔	8QSM	18636	2024-10-09	2023-10-10	3.69	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.88	0.0	0.04	15.71	0.00	2.477	14.37	4.83	3.5	96.5	0.0	1.84	1.45	0.56	0.78	1.11	3579	464	1	0	0	0	0	logfile
✔	8UiP	42301	2024-10-09	2023-10-10	4.3	2.81	4.26	5.6	0.004	0.79	0.0	0.04	16.55	0.01	2.087	25.91	0.00	13.1	86.9	0.0	-2.49	0.41	0.55	—	5.1	0.003	0.75	0.0	0.04	14.33	0.00	2.568	14.63	0.00	8.4	91.6	0.0	-2.17	2.12	0.41	0.54	—	2316	303	3	0	0	0	0	logfile
✔	8QSK	18634	2024-10-11	2023-10-10	3.3	3.77	3.34	3.6	0.003	0.63	0.0	0.04	12.96	0.01	2.235	7.41	1.59	6.9	92.9	0.2	1.79	0.77	0.75	0.74	3.6	0.003	0.63	0.0	0.04	14.59	0.00	2.569	7.82	2.68	7.0	93.0	0.0	1.99	0.86	0.79	0.79	1.38	8506	1046	4	0	16	0	0	logfile
✘	8WPK	37717	2024-10-14	2023-10-10	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16854	1909	11	70	1	0	0	logfile
✔	8QRS	18625	2024-10-09	2023-10-09	2.86	3.25	2.73	3.2	0.003	0.53	0.0	0.04	12.98	0.01	2.208	6.77	0.31	1.7	98.3	0.0	1.87	0.47	0.86	4.45	3.2	0.003	0.54	0.0	0.04	14.62	0.00	2.548	5.98	1.83	0.7	99.3	0.0	3.37	0.36	0.46	0.85	3.25	3093	416	2	0	0	0	0	logfile
✔	8QRR	18624	2024-10-09	2023-10-09	2.78	3.20	2.64	3.1	0.003	0.49	0.0	0.04	14.32	0.01	2.234	5.92	1.21	1.4	98.6	0.0	2.25	0.53	0.89	3.31	3.2	0.004	0.55	0.0	0.04	14.47	0.00	2.203	6.08	1.52	1.0	99.0	0.0	2.82	0.25	0.51	0.89	3.34	3129	421	2	0	3	0	0	logfile
✔	8QRi	18619	2024-10-11	2023-10-09	3.5	4.34	—	3.6	0.004	0.67	0.0	0.04	15.16	0.00	1.971	7.80	0.20	6.8	93.1	0.1	-0.30	0.82	0.76	1.47	3.6	0.003	0.60	0.0	0.04	15.90	0.00	2.311	6.87	1.46	6.6	93.3	0.1	0.52	0.41	0.83	0.77	1.24	55049	3380	2	0	0	0	27845	logfile
✔	8QRV	18627	2024-10-09	2023-10-09	2.9	3.28	2.88	3.3	0.004	0.57	0.0	0.04	14.31	0.00	2.373	6.73	0.61	1.2	98.8	0.0	2.08	0.55	0.83	2.96	3.3	0.003	0.52	0.0	0.04	15.37	0.00	2.498	4.85	2.44	0.7	99.3	0.0	2.96	0.47	0.60	0.86	2.70	3111	419	2	0	1	0	0	logfile
✔	8QRP	18622	2024-10-09	2023-10-09	2.7	3.10	2.57	3.0	0.002	0.47	0.0	0.04	13.51	0.00	2.285	5.31	0.00	1.5	98.5	0.0	1.62	0.46	0.86	3.59	3.0	0.006	1.37	1.0	0.04	14.74	0.00	2.209	6.71	2.43	1.0	99.0	0.0	3.22	0.39	0.47	0.86	3.80	3123	420	2	0	3	0	0	logfile
✔	8QRQ	18623	2024-10-09	2023-10-09	2.74	3.15	2.38	3.1	0.003	0.50	0.0	0.04	13.40	0.00	2.246	5.20	0.91	1.5	98.5	0.0	2.09	0.42	0.82	3.62	3.1	0.002	0.50	0.0	0.04	14.29	0.00	2.285	6.46	1.83	1.2	98.8	0.0	3.09	0.93	0.44	0.83	4.03	3092	415	2	0	3	0	0	logfile
✔	8UHF	42279	2024-10-12	2023-10-09	3.8	3.77	—	1.7	0.002	0.49	0.0	0.04	12.21	0.00	2.126	10.07	0.00	3.0	97.0	0.0	-1.49	0.62	0.79	0.57	1.7	0.005	0.91	0.0	0.04	16.07	0.00	2.321	20.10	2.30	4.7	95.3	0.0	-0.33	1.24	0.63	0.81	0.65	12411	1739	9	0	0	0	0	logfile
✔	8QRU	18626	2024-10-09	2023-10-09	2.9	3.28	2.75	3.2	0.003	0.52	0.0	0.04	13.62	0.01	2.257	6.45	0.61	2.0	98.0	0.0	1.76	0.50	0.88	4.30	3.2	0.003	0.63	0.0	0.04	15.52	0.01	2.559	7.40	2.14	1.0	99.0	0.0	1.94	0.47	0.50	0.88	3.58	3093	416	2	0	0	0	0	logfile
✔	8QRW	18628	2024-10-09	2023-10-09	3.0	3.23	2.93	3.2	0.002	0.50	0.0	0.03	13.75	0.00	2.188	4.07	0.00	1.2	98.8	0.0	2.07	0.53	0.85	2.97	3.2	0.003	0.62	0.0	0.04	15.07	0.00	2.320	4.22	1.22	1.2	98.8	0.0	2.53	0.34	0.50	0.83	3.07	3111	419	2	0	1	0	0	logfile
✔	8QRo	18621	2024-10-11	2023-10-09	2.6	3.08	2.53	2.9	0.002	0.52	0.0	0.04	11.99	0.00	2.231	6.31	0.31	1.5	98.5	0.0	0.95	0.65	0.87	3.93	2.9	0.003	0.54	0.0	0.04	14.43	0.00	2.235	6.36	1.33	0.7	99.3	0.0	2.81	0.93	0.62	0.86	3.21	9273	1245	6	0	9	0	0	logfile
✘	8WoZ	37703	2024-10-10	2023-10-08	3.25	2.47	3.32	2.2	0.003	0.70	1.0	0.04	16.32	0.01	2.147	10.00	0.15	5.8	94.2	0.0	-0.58	0.75	0.72	1.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6244	768	3	0	1	0	0	logfile
✔	8UHB	42268	2024-10-14	2023-10-08	3.35	4.22	3.36	3.8	0.004	0.62	0.0	0.04	14.11	0.00	2.015	9.46	0.00	5.9	94.1	0.0	-1.42	0.70	0.72	2.21	3.8	0.003	0.61	0.0	0.04	15.03	0.00	2.361	5.91	0.78	4.8	95.2	0.0	-0.01	0.78	0.72	0.80	1.88	16561	1075	6	0	1	0	8144	logfile
✔	8WoX	37701	2024-10-10	2023-10-08	2.75	2.45	3.23	2.2	0.003	0.53	0.0	0.04	13.94	0.00	2.099	4.19	0.00	4.3	95.7	0.0	0.02	0.77	0.83	3.39	2.2	0.003	0.60	0.0	0.04	16.25	0.00	2.121	4.68	2.50	3.6	96.4	0.0	0.48	0.49	0.76	0.83	3.05	6348	782	4	0	2	0	0	logfile
✔	8WP0	37705	2024-10-11	2023-10-08	3.4	3.57	3.31	3.5	0.005	1.11	2.0	0.06	11.22	0.01	1.379	2.88	0.00	7.8	92.2	0.0	-6.50	0.67	0.82	3.23	3.6	0.003	0.69	0.0	0.04	14.50	0.00	2.055	4.80	1.43	6.0	94.0	0.0	-2.64	0.68	0.67	0.85	2.06	9372	1217	2	0	4	0	0	logfile

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