Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WNP	37670	2024-10-13	2023-10-06	3.1	3.37	3.16	3.4	0.024	1.04	0.0	0.04	14.69	0.01	1.951	6.73	0.38	7.1	92.8	0.1	-1.41	0.58	0.65	1.74	3.4	0.004	0.74	0.0	0.05	16.29	0.01	2.329	8.06	3.01	7.9	92.0	0.1	-1.48	0.82	0.60	0.69	1.60	14142	1822	10	0	2	0	0	logfile
✔	8WNW	37674	2024-10-09	2023-10-06	3.5	3.04	3.38	3.4	0.013	1.77	2.0	0.11	13.59	0.01	2.500	4.92	2.31	1.8	98.2	0.0	2.30	0.43	0.69	2.59	3.2	0.002	0.57	0.0	0.04	15.11	0.00	2.444	8.09	1.54	1.2	98.8	0.0	2.56	1.27	0.49	0.75	2.87	1400	173	2	0	3	1	0	logfile
✔	8UG5	42214	2024-10-10	2023-10-05	2.91	2.34	2.88	2.9	0.008	1.13	0.0	0.08	13.47	0.02	2.029	8.71	0.00	4.8	95.2	0.0	0.42	0.53	0.82	2.97	2.9	0.004	0.57	0.0	0.04	16.33	0.00	2.587	8.47	4.09	2.3	97.7	0.0	2.40	1.40	0.53	0.84	3.25	6160	764	2	0	0	0	0	logfile
✔	8UG6	42215	2024-10-10	2023-10-05	3.06	2.81	3.01	3.0	0.005	0.66	0.0	0.05	16.57	0.01	2.215	7.06	0.00	2.1	97.9	0.0	1.97	0.44	0.65	1.56	3.0	0.003	0.60	0.0	0.04	17.32	0.00	2.539	8.17	2.24	0.8	99.2	0.0	3.20	2.20	0.53	0.80	1.93	6242	786	2	0	0	0	0	logfile
✔	8UG4	42213	2024-10-10	2023-10-05	3.02	2.74	2.96	3.0	0.006	0.73	0.0	0.06	14.72	0.02	2.207	9.47	0.00	2.4	97.6	0.0	1.83	0.60	0.86	3.18	3.0	0.003	0.48	0.0	0.04	15.45	0.00	2.516	6.44	0.48	2.1	97.9	0.0	3.01	0.92	0.61	0.89	3.32	7802	972	2	0	0	0	0	logfile
✔	8UG7	42216	2024-10-10	2023-10-05	2.95	2.74	2.90	2.9	0.005	0.66	0.0	0.05	16.57	0.01	2.215	7.06	0.00	2.1	97.9	0.0	1.97	0.60	0.89	3.44	2.9	0.003	0.52	0.0	0.04	17.02	0.00	2.559	5.87	1.49	1.6	98.4	0.0	3.76	1.28	0.60	0.90	3.38	6242	786	2	0	0	0	0	logfile
✔	8WMQ	37658	2024-10-14	2023-10-04	3.3	2.84	3.57	3.5	0.004	1.07	0.0	0.04	14.04	0.01	2.060	5.60	0.00	3.3	96.7	0.0	0.89	0.62	0.80	1.20	3.5	0.004	1.02	0.0	0.04	14.82	0.00	2.238	3.96	1.63	6.2	93.8	0.0	1.30	1.31	0.63	0.83	1.22	16348	1080	6	0	6	0	8208	logfile
✔	8QQi	18592	2024-10-13	2023-10-04	2.9	3.20	2.96	3.2	0.003	0.60	0.0	0.04	14.26	0.01	2.370	1.17	0.13	4.6	95.4	0.0	-2.86	0.78	0.85	3.64	3.2	0.003	0.55	0.0	0.04	17.71	0.00	2.173	2.59	2.01	3.9	96.1	0.0	-0.23	0.64	0.76	0.85	3.14	15652	1832	10	52	4	0	0	logfile
✔	8UFE	42205	2024-10-09	2023-10-04	3.68	4.10	3.84	4.1	0.005	0.79	0.0	0.04	19.16	0.00	2.205	12.83	1.76	5.3	94.4	0.2	1.92	0.49	0.72	-0.41	4.1	0.003	0.66	0.0	0.04	18.34	0.00	2.458	12.83	5.88	5.3	94.4	0.2	1.75	0.38	0.53	0.74	0.06	3449	470	2	0	1	0	0	logfile
✔	8UF7	42185	2024-10-09	2023-10-03	3.2	2.40	3.23	2.0	0.005	0.70	0.0	0.05	18.21	0.01	2.204	18.82	0.89	12.8	86.6	0.6	-2.23	0.68	0.67	1.77	2.1	0.005	0.74	0.0	0.05	18.48	0.01	2.487	16.88	7.61	12.6	86.8	0.6	-2.27	0.30	0.68	0.67	1.43	3927	514	3	0	0	0	0	logfile
✔	8WMi	37653	2024-10-11	2023-10-03	3.53	4.01	3.72	3.9	0.003	0.66	0.0	0.04	16.40	0.00	2.226	3.76	0.00	5.3	94.7	0.0	-1.01	0.74	0.77	1.61	3.9	0.002	0.60	0.0	0.04	17.64	0.00	2.440	5.47	1.31	5.5	94.5	0.0	-0.86	0.45	0.75	0.79	2.04	10763	1237	3	39	4	0	0	logfile
✔	8WML	37655	2024-10-12	2023-10-03	2.86	3.12	3.00	3.1	0.005	0.86	0.0	0.06	16.12	0.01	2.070	2.65	0.00	4.4	95.6	0.0	-1.13	0.70	0.83	3.08	3.1	0.003	0.59	0.0	0.04	17.41	0.00	2.352	3.92	1.26	4.1	95.9	0.0	-0.38	0.49	0.72	0.85	2.69	13283	1543	4	38	4	0	0	logfile
✔	8WM8	37645	2024-10-14	2023-10-03	3.54	3.92	3.62	3.9	0.002	0.58	0.0	0.04	14.85	0.00	1.963	8.64	0.00	7.3	92.7	0.0	-2.51	0.59	0.76	1.77	3.9	0.003	0.63	0.0	0.04	16.22	0.00	2.358	7.63	1.23	7.2	92.8	0.0	-1.95	0.39	0.56	0.73	1.52	16776	1055	5	0	1	0	8522	logfile
✔	8QPV	18563	2024-10-13	2023-10-03	4.0	3.74	3.84	3.7	0.003	0.65	0.0	0.04	13.78	0.00	2.138	10.79	0.34	6.3	93.6	0.1	-0.37	0.70	0.82	—	3.7	0.004	0.82	0.0	0.04	15.95	0.00	1.721	8.87	3.02	6.7	93.3	0.1	-0.29	0.40	0.70	0.83	—	14088	1802	7	0	23	0	0	logfile
✔	8WMC	37649	2024-10-14	2023-10-03	2.9	3.27	3.05	3.3	0.004	0.68	0.0	0.04	14.80	0.00	2.108	1.47	0.00	2.6	97.4	0.0	-0.05	0.70	0.83	3.00	3.3	0.003	0.55	0.0	0.04	17.03	0.00	2.358	3.07	1.85	2.9	97.1	0.0	0.39	0.40	0.69	0.85	2.73	16929	1983	4	38	4	0	0	logfile
✔	8WMA	37647	2024-10-09	2023-10-03	3.47	2.40	3.36	2.3	0.007	0.80	0.0	0.05	11.97	0.00	1.739	5.91	0.31	4.4	95.6	0.0	-0.62	0.68	0.73	3.00	2.0	0.004	0.63	0.0	0.04	14.99	0.00	2.535	7.03	2.48	3.7	96.3	0.0	0.70	0.43	0.70	0.74	2.30	3172	413	2	0	0	0	0	logfile
✔	8WM5	37641	2024-10-10	2023-10-03	3.04	3.42	3.11	3.4	0.007	0.77	0.0	0.04	18.60	0.01	1.284	12.25	0.00	4.3	95.6	0.1	1.57	0.66	0.85	2.35	3.4	0.004	0.58	0.0	0.04	16.86	0.00	2.376	9.34	2.54	2.2	97.8	0.0	2.45	0.92	0.58	0.86	2.17	7179	950	4	0	5	0	0	logfile
✔	8QPZ	18570	2024-10-09	2023-10-03	2.5	2.74	2.49	2.9	0.004	0.70	0.0	0.05	10.84	0.00	2.495	9.26	8.57	0.0	100.0	0.0	-1.32	0.50	0.78	4.05	2.9	0.007	0.69	0.0	0.05	12.95	0.00	2.520	4.15	8.33	6.1	93.9	0.0	-2.53	0.43	0.53	0.81	4.63	4116	612	12	0	0	0	0	logfile
✔	8WMH	37652	2024-10-12	2023-10-03	2.6	2.23	2.67	1.8	0.003	0.54	0.0	0.04	19.42	0.00	2.196	9.02	0.36	4.1	95.9	0.0	-0.02	0.60	0.62	2.31	1.8	0.004	0.59	0.0	0.04	20.27	0.00	2.512	7.27	1.81	4.5	95.5	0.0	-0.18	0.66	0.73	0.74	2.32	12942	1198	4	141	0	0	0	logfile
✔	8WM4	37640	2024-10-12	2023-10-02	2.93	3.34	3.10	3.3	0.004	0.87	0.0	0.05	17.05	0.01	2.291	4.80	0.78	5.9	94.1	0.0	-2.05	0.71	0.73	1.32	3.3	0.003	0.67	0.0	0.04	17.88	0.00	2.379	8.21	2.60	6.5	93.5	0.0	-0.90	0.55	0.73	0.75	1.38	11530	1331	3	38	4	0	0	logfile

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