Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QPE	18548	2024-10-11	2023-10-01	3.1	3.23	3.01	3.0	0.002	0.47	0.0	0.11	15.70	0.00	2.202	8.57	0.00	1.9	98.1	0.0	1.39	0.69	0.83	2.26	2.9	0.003	0.52	0.0	0.04	16.39	0.00	2.401	7.48	0.75	2.0	98.0	0.0	1.39	0.29	0.70	0.86	2.29	54566	6251	21	236	1	0	0	logfile
✔	8QPF	18549	2024-10-11	2023-10-01	2.53	3.55	2.56	3.3	0.005	0.84	0.0	0.05	14.75	0.01	2.257	3.31	0.75	2.3	97.5	0.3	-0.50	0.78	0.84	3.52	3.3	0.004	0.62	0.0	0.04	15.54	0.00	2.508	7.01	1.70	2.1	97.7	0.3	2.74	1.03	0.65	0.84	3.30	9085	1167	6	0	0	202	0	logfile
✔	8WLR	37629	2024-10-10	2023-09-30	3.12	3.43	3.11	3.3	0.003	0.53	0.0	0.04	16.12	0.00	2.266	4.86	0.14	1.9	98.1	0.0	0.16	0.70	0.88	3.10	3.3	0.004	0.55	0.0	0.04	16.20	0.00	2.325	3.03	1.59	2.0	98.0	0.0	0.71	0.35	0.73	0.90	3.05	6431	792	4	0	2	0	0	logfile
✔	8WLJ	37621	2024-10-09	2023-09-30	3.6	3.72	3.64	3.7	0.005	0.82	1.0	0.05	14.05	0.01	2.283	8.82	0.00	2.5	97.5	0.0	0.69	0.50	0.75	2.07	3.7	0.003	0.72	0.0	0.04	16.59	0.01	2.408	9.68	3.47	1.9	98.1	0.0	1.32	1.05	0.49	0.74	1.80	4035	530	2	0	0	0	0	logfile
✔	8WLK	37622	2024-10-09	2023-09-30	3.37	3.55	3.44	3.6	0.006	0.91	0.0	0.05	15.66	0.01	2.227	9.42	0.00	2.6	97.4	0.0	-0.01	0.44	0.72	1.86	3.6	0.003	0.75	0.0	0.04	17.35	0.00	2.469	10.45	5.32	1.8	98.2	0.0	0.82	1.04	0.43	0.73	1.88	2873	383	2	0	1	0	0	logfile
✔	8WLL	37623	2024-10-09	2023-09-30	3.74	3.82	3.77	3.9	0.024	1.06	0.0	0.10	13.07	0.01	2.238	10.14	0.00	2.9	97.1	0.0	0.58	0.50	0.76	1.39	3.8	0.004	0.91	0.0	0.05	15.79	0.00	2.553	13.35	4.68	2.9	97.1	0.0	0.73	0.51	0.49	0.77	0.17	2815	389	2	0	1	0	0	logfile
✔	8WLM	37624	2024-10-09	2023-09-30	3.57	3.69	3.72	3.8	0.004	0.80	0.0	0.05	14.40	0.00	2.198	10.34	0.00	3.4	96.6	0.0	0.52	0.43	0.74	1.11	3.8	0.003	0.72	0.0	0.04	16.75	0.00	2.598	11.04	2.38	3.4	96.6	0.0	1.02	0.48	0.44	0.75	1.16	2804	382	2	0	1	0	0	logfile
✔	8QP5	18543	2024-10-12	2023-09-29	4.4	3.76	4.19	3.6	0.003	0.63	0.0	0.04	13.40	0.00	2.113	15.18	0.17	8.0	92.0	0.0	-1.49	0.69	0.79	—	3.6	0.003	0.65	0.0	0.04	13.63	0.00	2.315	10.60	0.09	7.1	92.9	0.0	-1.58	0.36	0.69	0.79	—	12554	1746	6	0	0	0	0	logfile
✔	8WLD	37616	2024-10-09	2023-09-29	3.48	3.88	3.62	3.7	0.002	0.52	0.0	0.04	12.16	0.00	2.045	6.46	0.02	5.5	94.3	0.2	-0.13	0.77	0.80	1.90	3.7	0.005	0.66	0.0	0.05	14.02	0.00	2.298	6.75	1.50	8.0	91.9	0.1	-0.18	0.48	0.78	0.83	1.93	48292	6850	15	0	0	0	0	logfile
✔	8QoT	18541	2024-10-10	2023-09-29	3.2	2.66	3.11	2.2	0.004	0.62	0.0	0.04	12.78	0.00	2.219	6.66	0.00	3.7	96.3	0.0	0.08	0.79	0.77	3.11	2.3	0.004	0.68	0.0	0.04	15.19	0.00	2.583	7.74	1.69	3.2	96.8	0.0	0.82	1.15	0.79	0.81	2.88	7493	968	5	0	0	0	0	logfile
✔	8UDG	42149	2024-10-15	2023-09-28	4.98	6.27	5.10	5.0	0.004	0.65	0.0	0.04	11.43	0.00	2.089	3.07	0.00	2.8	97.1	0.2	-0.18	0.86	0.74	—	5.0	0.003	0.55	0.0	0.04	12.02	0.00	2.224	7.94	0.00	4.6	95.3	0.2	0.19	1.04	0.87	0.76	—	19524	1317	7	0	0	0	9627	logfile
✔	8UD5	42147	2024-10-14	2023-09-28	3.13	3.33	3.15	3.3	0.002	0.49	0.0	0.05	18.01	0.00	2.238	7.88	0.27	1.2	98.8	0.0	0.54	0.71	0.81	3.80	3.3	0.003	0.53	0.0	0.04	17.76	0.00	2.459	5.64	2.10	2.3	97.7	0.0	0.39	0.98	0.71	0.83	3.80	17664	2076	8	54	0	0	0	logfile
✔	8UD4	42146	2024-10-14	2023-09-28	3.25	3.46	3.27	3.5	0.003	0.56	0.0	0.05	17.65	0.00	2.204	7.62	0.43	1.6	98.4	0.0	0.49	0.69	0.80	3.51	3.5	0.003	0.54	0.0	0.04	17.50	0.00	2.522	5.48	1.61	2.0	98.0	0.0	0.57	0.99	0.73	0.82	3.38	17498	2076	8	46	0	0	0	logfile
✔	8UD9	42148	2024-10-10	2023-09-28	2.04	2.16	2.10	2.1	0.004	0.56	0.0	0.04	16.94	0.00	2.235	2.23	0.15	1.7	98.3	0.0	1.27	0.81	0.90	6.09	2.1	0.008	0.75	0.0	0.05	17.38	0.01	2.376	4.18	1.25	1.7	98.3	0.0	1.40	0.40	0.82	0.91	6.06	49955	6264	58	0	2	1120	0	logfile
✔	8QoE	18535	2024-10-14	2023-09-28	3.16	3.80	3.17	3.5	0.019	2.44	121.0	0.22	14.31	0.01	1.749	4.38	0.84	3.4	96.6	0.0	-2.30	0.75	0.78	2.78	3.6	0.002	0.53	0.0	0.04	15.49	0.00	2.469	2.30	0.42	2.9	97.1	0.0	1.50	0.69	0.73	0.80	1.75	17816	1136	2	0	0	0	9072	logfile
✔	8WKX	37610	2024-10-14	2023-09-28	4.15	4.52	4.17	4.2	0.003	0.58	0.0	0.04	14.27	0.00	1.594	11.38	0.05	4.7	95.3	0.0	-0.59	0.83	0.80	—	4.2	0.002	0.58	0.0	0.04	14.61	0.00	2.388	8.30	0.00	4.3	95.7	0.0	-0.28	0.50	0.83	0.80	—	16555	1988	2	0	0	0	0	logfile
✔	8UD2	42144	2024-10-14	2023-09-28	2.33	2.43	2.34	2.5	0.003	0.53	0.0	0.05	16.45	0.00	2.293	6.23	1.08	1.5	98.5	0.0	0.47	0.70	0.83	4.28	2.5	0.003	0.53	0.0	0.05	16.76	0.00	2.605	4.60	1.08	1.4	98.6	0.0	0.55	0.96	0.73	0.85	4.40	16530	2076	6	0	0	0	0	logfile
✔	8UD3	42145	2024-10-14	2023-09-28	2.67	2.87	2.73	2.9	0.003	0.53	0.0	0.05	18.22	0.00	2.217	7.41	0.65	1.4	98.6	0.0	0.47	0.67	0.79	4.45	2.8	0.002	0.52	0.0	0.04	17.80	0.00	2.531	5.89	1.08	1.8	98.2	0.0	0.78	1.34	0.69	0.84	3.87	17244	2076	8	34	0	0	0	logfile
✔	8UDL	42150	2024-10-13	2023-09-28	2.37	1.99	2.45	1.7	0.003	0.74	0.0	0.05	15.49	0.01	2.257	2.17	0.39	3.8	96.1	0.1	-0.77	0.66	0.76	3.31	1.7	0.005	0.83	0.0	0.05	19.10	0.01	2.259	6.42	3.29	4.5	95.5	0.0	-0.04	2.69	0.67	0.78	2.46	15245	1783	5	46	0	0	0	logfile
✔	8UCS	42139	2024-10-12	2023-09-27	2.4	2.51	2.38	2.5	0.003	0.49	0.0	0.04	18.16	0.00	2.235	8.78	0.36	3.0	97.0	0.0	0.55	0.66	0.81	2.59	2.5	0.003	0.55	0.0	0.04	18.42	0.00	2.516	8.39	2.77	3.7	96.3	0.0	2.33	0.76	0.68	0.85	2.18	12605	1632	12	0	0	2	0	logfile

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