Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8UBW	42107	2024-10-10	2023-09-25	2.59	3.18	2.61	3.0	0.002	0.48	0.0	0.03	14.62	0.00	2.236	3.93	0.85	1.4	98.6	0.0	3.39	0.70	0.88	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6741	418	2	0	4	38	3343	logfile
✘	8UBX	42108	2024-10-10	2023-09-25	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6757	419	2	0	4	68	3328	logfile
✔	8QN7	18509	2024-10-09	2023-09-25	2.7	2.38	2.18	2.7	0.010	1.43	0.0	0.09	13.54	0.01	2.570	5.31	3.45	8.3	91.7	0.0	-3.22	0.45	0.93	6.45	2.6	0.003	0.50	0.0	0.05	18.21	0.00	2.686	2.48	0.69	6.7	93.3	0.0	-3.35	1.19	0.43	0.92	6.22	1455	190	5	0	0	0	0	logfile
✔	8UC3	42114	2024-10-09	2023-09-25	2.78	3.15	2.78	3.1	0.005	0.85	0.0	0.05	16.43	0.01	2.115	12.15	1.78	4.0	96.0	0.0	0.37	0.52	0.72	1.94	3.1	0.003	0.63	0.0	0.04	16.98	0.01	2.621	6.25	2.67	2.2	97.8	0.0	1.59	1.03	0.51	0.74	1.60	4304	556	6	0	2	0	0	logfile
✔	8WiF	37565	2024-10-10	2023-09-24	2.9	3.32	2.88	2.9	0.006	0.63	0.0	0.04	23.74	0.00	2.057	8.94	4.98	4.5	95.4	0.0	0.79	0.84	0.90	2.13	2.9	0.006	0.65	0.0	0.04	23.40	0.00	2.015	7.03	3.95	4.3	95.6	0.0	0.87	1.09	0.84	0.90	2.36	52783	2557	23	1517	0	0	0	logfile
✔	8WiD	37564	2024-10-10	2023-09-24	3.5	3.85	3.02	3.4	0.004	0.59	0.0	0.04	23.78	0.01	2.111	10.04	0.78	3.5	96.5	0.0	0.66	0.83	0.88	2.05	3.4	0.005	0.60	0.0	0.04	23.32	0.00	1.959	6.98	2.84	3.8	96.2	0.0	0.89	1.55	0.83	0.89	2.16	51308	2326	23	1533	0	0	0	logfile
✔	8UBR	42101	2024-10-11	2023-09-24	2.7	2.07	2.73	2.6	0.006	0.83	0.0	0.06	17.61	0.00	1.887	3.81	0.10	1.8	98.2	0.0	0.76	0.61	0.83	2.22	2.6	0.002	0.50	0.0	0.04	17.87	0.00	2.022	3.23	1.58	1.8	98.2	0.0	2.57	0.81	0.60	0.84	2.42	9440	1156	2	0	9	4	0	logfile
✔	8Wi9	37561	2024-10-10	2023-09-24	3.5	3.88	3.05	3.4	0.003	0.56	0.0	0.03	23.55	0.00	1.955	10.62	0.43	4.2	95.8	0.0	0.56	0.86	0.86	1.71	3.4	0.006	0.63	1.0	0.04	23.19	0.00	1.987	7.59	2.94	4.3	95.7	0.0	0.72	1.11	0.86	0.86	1.73	54459	2779	24	1515	0	0	0	logfile
✔	8Wi5	37558	2024-10-11	2023-09-24	3.46	3.75	3.44	3.7	0.002	0.47	0.0	0.04	16.84	0.01	2.198	6.30	0.47	2.3	97.7	0.0	2.62	0.54	0.62	0.66	3.7	0.003	0.57	0.0	0.04	17.14	0.00	2.414	5.54	1.69	2.8	97.2	0.0	1.85	0.56	0.63	0.76	1.51	9735	1242	2	0	0	0	0	logfile
✔	8Wi4	37557	2024-10-11	2023-09-24	3.2	3.46	3.23	3.4	0.003	0.57	0.0	0.04	18.33	0.00	2.276	8.11	0.39	5.2	94.3	0.5	1.03	0.65	0.77	0.76	3.4	0.003	0.59	0.0	0.04	18.38	0.00	2.456	8.95	3.29	4.8	94.7	0.4	0.73	0.45	0.67	0.83	1.61	9443	1207	1	0	0	0	0	logfile
✔	8Wi3	37556	2024-10-11	2023-09-24	3.38	3.85	3.53	3.8	0.004	0.68	0.0	0.04	17.11	0.00	2.187	6.04	0.38	6.6	93.3	0.1	1.08	0.63	0.76	0.50	3.8	0.003	0.57	0.0	0.04	17.57	0.00	2.525	4.22	2.40	6.5	93.3	0.2	1.56	0.36	0.64	0.74	0.58	9489	1208	1	0	0	0	0	logfile
✔	8Wi2	37555	2024-10-11	2023-09-24	4.06	4.53	4.17	4.3	0.003	0.66	0.0	0.04	17.70	0.00	2.106	11.61	0.67	3.1	96.9	0.0	2.17	0.67	0.79	—	4.3	0.003	0.63	0.0	0.04	14.40	0.00	2.485	9.69	0.00	3.3	96.7	0.0	1.93	1.35	0.69	0.78	—	9537	1214	2	0	0	0	0	logfile
✔	8WHZ	37553	2024-10-10	2023-09-23	3.93	4.21	3.90	4.2	0.004	0.79	0.0	0.05	14.48	0.01	1.873	15.50	0.29	4.1	95.8	0.1	-0.54	0.71	0.72	1.73	4.1	0.005	1.05	1.0	0.05	16.76	0.00	2.035	13.45	3.31	3.9	95.9	0.1	0.21	2.61	0.74	0.78	0.75	6515	791	4	0	8	0	0	logfile
✔	8WGW	37517	2024-10-10	2023-09-22	2.9	3.23	3.07	3.2	0.004	0.59	0.0	0.04	19.74	0.00	2.167	9.11	0.14	4.4	95.6	0.0	-0.16	0.66	0.79	3.06	3.2	0.003	0.57	0.0	0.04	16.81	0.00	2.581	6.08	1.87	4.3	95.7	0.0	0.10	0.99	0.62	0.78	2.86	6564	794	5	0	9	0	0	logfile
✔	8WH8	37533	2024-10-13	2023-09-22	3.6	3.66	3.57	3.5	0.013	1.40	1.0	0.07	25.12	0.01	2.300	14.01	0.72	7.4	91.7	0.9	-3.35	0.82	0.81	1.31	3.5	0.003	0.64	0.0	0.03	25.58	0.00	2.343	9.10	1.64	4.4	95.5	0.1	1.61	0.97	0.84	0.83	0.79	14304	1149	12	250	1	0	0	logfile
✔	8WH5	37529	2024-10-13	2023-09-22	3.58	3.82	3.52	3.5	0.012	1.35	0.0	0.07	25.45	0.01	2.219	14.70	0.91	7.4	91.8	0.8	-3.46	0.85	0.80	1.13	3.5	0.004	0.64	0.0	0.03	25.85	0.00	2.506	7.99	2.24	4.4	95.3	0.3	1.27	1.01	0.88	0.85	1.05	14663	1156	11	266	0	0	0	logfile
✔	8WGX	37520	2024-10-10	2023-09-22	3.47	3.84	3.53	3.8	0.003	0.54	0.0	0.04	16.22	0.00	2.283	4.10	0.22	3.3	96.7	0.0	1.83	0.56	0.74	1.75	3.8	0.003	0.52	0.0	0.04	16.33	0.00	2.167	3.76	2.17	3.1	96.9	0.0	1.64	0.44	0.56	0.77	2.08	8760	547	2	0	2	0	4363	logfile
✘	8UB3	42075	2024-10-14	2023-09-22	3.3	3.17	3.38	3.1	0.005	0.69	0.0	0.04	9.45	0.01	2.321	4.56	0.00	0.0	100.0	0.0	3.84	0.45	0.71	2.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71260	4480	20	0	0	0	36780	logfile
✔	8WH9	37535	2024-10-13	2023-09-22	3.31	3.58	3.37	3.4	0.009	1.19	0.0	0.07	25.84	0.01	2.216	13.31	1.08	7.4	91.7	0.9	-2.77	0.81	0.72	0.93	3.3	0.003	0.64	0.0	0.04	26.03	0.00	2.497	7.39	1.77	5.5	94.4	0.1	1.39	1.93	0.87	0.86	1.07	15328	1188	12	284	2	0	0	logfile
✔	8WGR	37515	2024-10-11	2023-09-22	2.75	3.15	2.82	3.1	0.004	0.71	0.0	0.04	17.04	0.00	2.026	4.64	2.38	3.1	96.7	0.2	1.68	0.54	0.77	1.91	3.1	0.003	0.57	0.0	0.04	17.08	0.00	2.474	2.94	1.08	3.1	96.9	0.0	1.66	1.22	0.53	0.77	3.18	8830	548	2	0	4	34	4371	logfile

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