Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WGR	37515	2024-10-11	2023-09-22	2.75	3.15	2.82	3.1	0.004	0.71	0.0	0.04	17.04	0.00	2.026	4.64	2.38	3.1	96.7	0.2	1.68	0.54	0.77	1.91	3.1	0.003	0.57	0.0	0.04	17.08	0.00	2.474	2.94	1.08	3.1	96.9	0.0	1.66	1.22	0.53	0.77	3.18	8830	548	2	0	4	34	4371	logfile
✔	8QMA	18496	2024-10-10	2023-09-21	3.5	2.52	—	1.8	0.004	0.69	0.0	0.05	13.65	0.01	1.997	5.82	0.74	4.0	95.7	0.2	-1.28	0.80	0.74	3.41	1.7	0.005	0.64	0.0	0.04	15.15	0.00	1.855	7.55	1.53	3.0	96.9	0.0	0.72	1.19	0.82	0.78	2.90	52064	6421	23	0	4	0	0	logfile
✔	8WGE	37511	2024-10-12	2023-09-21	3.4	3.15	3.27	3.2	0.002	0.44	0.0	0.04	15.64	0.00	2.292	6.70	0.34	1.8	98.2	0.0	0.72	0.68	0.86	2.82	3.2	0.003	0.53	0.0	0.04	16.20	0.00	2.558	6.36	2.09	2.7	97.3	0.0	1.19	0.28	0.67	0.86	2.36	13515	1740	10	0	5	0	0	logfile
✔	8WG7	37504	2024-10-10	2023-09-20	2.54	3.39	2.59	3.2	0.003	0.54	0.0	0.04	13.04	0.00	2.167	8.69	0.12	3.6	96.2	0.3	1.50	0.67	0.78	2.51	3.2	0.006	1.04	2.0	0.06	16.07	0.01	2.229	7.88	1.74	3.6	96.4	0.0	1.59	0.44	0.65	0.78	2.24	8123	1030	5	0	0	0	0	logfile
✔	8WG3	37501	2024-10-09	2023-09-20	3.4	3.61	3.39	3.6	0.009	1.47	1.0	0.08	16.49	0.01	2.528	0.86	3.30	5.6	94.4	0.0	-2.32	0.50	0.75	2.29	3.6	0.003	0.65	0.0	0.04	16.09	0.00	2.367	6.47	2.68	3.2	96.8	0.0	1.56	1.70	0.55	0.76	0.95	4585	548	2	0	4	0	0	logfile
✔	8WG8	37505	2024-10-10	2023-09-20	2.71	3.54	2.73	3.3	0.005	0.68	0.0	0.05	13.93	0.00	2.170	7.15	2.13	3.8	96.2	0.0	0.12	0.64	0.79	2.81	3.3	0.004	0.69	0.0	0.04	15.83	0.00	2.464	6.15	2.60	3.9	96.1	0.0	0.78	0.50	0.63	0.80	2.53	8043	1037	6	0	0	0	0	logfile
✔	8QLo	18486	2024-10-10	2023-09-20	2.57	3.41	2.60	3.2	0.009	1.18	1.0	0.08	15.29	0.01	2.209	14.78	2.16	4.5	95.4	0.1	-1.41	0.76	0.78	2.76	3.2	0.004	0.67	0.0	0.04	16.63	0.00	2.412	8.25	3.18	2.6	97.4	0.0	0.49	0.88	0.77	0.80	2.82	7282	892	2	0	0	0	0	logfile
✔	8UAF	42062	2024-10-13	2023-09-20	3.18	2.39	3.33	2.1	0.005	0.64	0.0	0.27	18.11	0.00	1.721	4.71	0.00	5.0	95.0	0.0	-0.70	0.75	0.74	2.16	2.1	0.003	0.60	0.0	0.04	16.93	0.00	1.949	4.73	1.60	5.0	95.0	0.0	-0.46	0.44	0.74	0.73	1.72	64015	8033	35	0	22	0	0	logfile
✔	8WG5	37503	2024-10-13	2023-09-20	3.05	3.73	3.03	3.0	0.003	0.59	0.0	0.04	26.06	0.00	2.099	12.21	0.32	2.6	97.4	0.0	1.36	0.83	0.71	0.29	3.0	0.005	0.70	0.0	0.04	26.95	0.00	2.079	10.80	2.42	2.5	97.5	0.0	1.47	1.58	0.91	0.87	1.21	14965	1135	12	294	0	0	0	logfile
✔	8UAE	42061	2024-10-13	2023-09-20	3.25	2.38	3.36	2.1	0.004	0.54	0.0	0.13	15.78	0.00	1.383	2.81	0.01	4.4	95.6	0.0	-0.64	0.80	0.81	2.82	2.1	0.002	0.56	0.0	0.04	17.23	0.00	1.973	3.02	1.61	4.6	95.4	0.0	-0.03	1.22	0.79	0.80	2.42	64624	8033	35	0	22	0	0	logfile
✔	8U9Y	42041	2024-10-12	2023-09-20	3.7	4.00	3.73	3.9	0.005	0.82	0.0	0.07	23.72	0.01	2.079	7.40	0.14	9.6	90.4	0.0	-0.76	0.72	0.75	2.67	3.9	0.003	0.68	0.0	0.04	16.97	0.01	2.263	6.41	2.93	7.8	92.1	0.1	-0.42	1.65	0.68	0.73	2.00	12951	881	10	0	14	0	6188	logfile
✔	8WFK	37494	2024-10-09	2023-09-19	3.22	3.53	3.37	3.6	0.004	0.62	0.0	0.04	16.76	0.00	2.137	5.06	0.00	5.0	95.0	0.0	-1.97	0.54	0.85	2.36	3.6	0.003	0.61	0.0	0.04	16.78	0.00	2.338	4.14	2.60	5.4	94.6	0.0	-0.35	0.39	0.59	0.87	2.05	4371	546	2	0	4	0	0	logfile
✔	8WFL	37495	2024-10-09	2023-09-19	3.03	3.10	3.19	3.5	0.009	0.81	0.0	0.07	17.69	0.00	2.223	11.05	0.21	6.8	93.2	0.0	-0.36	0.54	0.79	2.07	3.2	0.003	0.61	0.0	0.04	18.14	0.00	2.572	8.54	5.78	5.8	94.2	0.0	0.33	0.33	0.53	0.79	1.89	4414	552	2	0	1	0	0	logfile
✔	8WFi	37492	2024-10-09	2023-09-19	2.58	2.82	2.57	2.8	0.002	0.57	0.0	0.04	12.58	0.00	2.278	2.56	0.00	2.4	97.6	0.0	1.63	0.62	0.81	3.69	2.8	0.003	0.55	0.0	0.04	15.08	0.00	2.213	2.33	1.32	2.8	97.2	0.0	2.08	0.89	0.65	0.84	3.32	4347	543	3	0	3	37	0	logfile
✔	8WEJ	37477	2024-10-12	2023-09-18	2.79	2.58	2.84	3.0	0.007	0.91	0.0	0.05	14.70	0.01	1.991	3.56	2.33	3.6	96.4	0.0	-0.11	0.72	0.78	4.06	3.0	0.003	0.65	0.0	0.04	16.47	0.00	1.967	10.46	1.68	3.3	96.7	0.0	0.24	1.16	0.70	0.79	3.43	10659	1336	11	0	12	1	0	logfile
✔	8U8U	42027	2024-10-12	2023-09-18	2.9	2.27	2.93	2.2	0.005	0.84	0.0	0.07	17.58	0.01	2.234	5.98	0.17	1.7	98.3	0.0	0.14	0.62	0.59	2.05	2.0	0.002	0.59	0.0	0.04	19.18	0.00	2.359	5.69	2.20	2.3	97.7	0.0	1.12	0.56	0.78	0.79	1.64	12344	1398	7	61	1	0	0	logfile
✔	8U8Z	42030	2024-10-10	2023-09-18	3.25	4.03	3.29	3.8	0.003	0.66	0.0	0.05	17.59	0.01	2.082	10.48	0.91	2.2	97.8	0.0	0.97	0.87	0.82	2.07	3.7	0.003	0.61	0.0	0.04	17.86	0.00	2.520	7.40	1.93	2.5	97.5	0.0	0.70	0.88	0.87	0.85	2.20	8147	1034	4	0	2	0	0	logfile
✔	8U8V	42028	2024-10-12	2023-09-18	2.74	2.20	—	2.3	0.005	0.89	0.0	0.07	18.50	0.01	2.092	6.55	0.46	4.0	96.0	0.0	-1.29	0.59	0.54	2.22	2.1	0.004	0.67	0.0	0.04	19.73	0.01	1.978	6.69	2.83	4.3	95.7	0.1	-0.04	0.56	0.76	0.75	1.79	11956	1392	7	61	2	0	0	logfile
✔	8U8F	42023	2024-10-13	2023-09-17	3.49	3.84	3.55	3.9	0.003	0.54	0.0	0.04	15.46	0.01	2.124	7.60	0.13	2.5	97.4	0.1	1.41	0.59	0.68	1.19	3.9	0.002	0.55	0.0	0.04	16.16	0.00	2.336	5.81	2.28	3.4	96.6	0.0	0.77	1.78	0.60	0.74	1.68	13891	889	5	0	1	0	6925	logfile
✔	8WE4	37471	2024-10-13	2023-09-17	2.91	2.35	2.96	2.1	0.004	0.70	0.0	0.05	13.30	0.01	1.872	7.79	0.45	5.9	93.6	0.5	-0.51	0.76	0.76	3.54	2.1	0.003	0.66	0.0	0.04	15.98	0.00	1.965	7.11	1.70	6.4	93.4	0.2	-0.58	0.94	0.79	0.79	2.64	8281	1017	8	0	11	0	0	logfile

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