Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WDY	37467	2024-10-12	2023-09-16	2.69	2.29	2.80	2.1	0.004	0.76	0.0	0.05	14.72	0.01	2.000	5.79	1.44	3.8	96.1	0.1	0.26	0.80	0.80	3.74	2.1	0.002	0.58	0.0	0.04	16.18	0.00	2.102	3.13	1.88	2.7	97.2	0.1	0.88	0.40	0.82	0.83	2.97	6548	791	6	0	11	0	0	logfile
✔	8WE1	37470	2024-10-12	2023-09-16	2.47	2.24	2.54	2.0	0.004	0.61	0.0	0.04	18.67	0.00	2.001	5.63	3.89	4.1	95.9	0.0	0.67	0.80	0.79	2.48	2.0	0.003	0.62	0.0	0.04	17.10	0.00	2.193	4.38	4.03	3.9	96.1	0.0	0.50	0.26	0.83	0.83	2.49	6559	791	6	0	11	0	0	logfile
✔	8WDZ	37468	2024-10-12	2023-09-16	2.71	2.24	2.74	2.0	0.004	0.59	0.0	0.04	13.56	0.00	2.004	5.55	0.43	3.7	96.3	0.0	0.07	0.78	0.79	3.27	2.0	0.002	0.55	0.0	0.04	15.73	0.00	2.180	3.52	1.30	2.3	97.6	0.1	0.47	0.92	0.82	0.83	2.64	6559	791	6	0	11	0	0	logfile
✘	8QKo	18468	2024-10-14	2023-09-16	3.73	4.47	3.64	4.1	0.003	0.52	0.0	0.03	13.37	0.01	1.736	9.97	3.14	2.7	97.3	0.0	2.37	0.51	0.74	0.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18492	2268	12	0	0	0	0	logfile
✔	8U89	42018	2024-10-11	2023-09-16	3.3	3.66	3.52	3.7	0.003	0.70	0.0	0.04	16.18	0.01	2.091	8.51	0.54	2.4	97.6	0.0	0.98	0.67	0.79	1.47	3.7	0.003	0.59	0.0	0.04	16.93	0.00	2.135	7.50	2.27	2.5	97.5	0.0	1.49	1.14	0.68	0.80	1.43	9928	1241	4	0	2	0	0	logfile
✔	8WE0	37469	2024-10-12	2023-09-16	2.8	2.28	2.85	2.0	0.007	1.15	3.0	0.24	17.15	0.03	2.000	17.16	8.20	10.0	86.7	3.3	-1.66	0.76	0.75	3.40	2.0	0.003	0.71	0.0	0.04	16.78	0.01	1.948	6.11	3.45	7.6	92.1	0.3	-0.19	1.34	0.81	0.80	2.79	6538	791	5	0	10	0	0	logfile
✔	8QKK	18464	2024-10-09	2023-09-15	3.23	3.44	3.28	3.6	0.002	0.49	0.0	0.04	14.14	0.00	2.132	9.00	0.00	2.9	97.1	0.0	2.28	0.62	0.79	1.22	3.6	0.005	1.10	0.0	0.05	15.77	0.00	2.460	10.24	1.85	2.2	97.8	0.0	1.63	0.79	0.64	0.80	1.17	5581	730	1	0	0	0	0	logfile
✔	8QKi	18463	2024-10-11	2023-09-15	3.46	4.02	3.31	3.8	0.004	0.75	0.0	0.05	12.59	0.00	2.031	8.10	0.54	3.4	96.6	0.0	2.14	0.60	0.80	2.58	3.8	0.003	0.64	0.0	0.04	14.40	0.00	2.483	9.29	2.33	3.4	96.6	0.0	3.54	0.94	0.59	0.88	2.32	10188	1242	12	0	6	0	0	logfile
✔	8WD9	37458	2024-10-13	2023-09-14	3.35	3.68	3.40	3.6	0.007	0.93	6.0	0.06	14.66	0.01	2.032	9.36	1.02	12.3	87.4	0.2	-4.16	0.75	0.88	2.81	3.6	0.003	0.70	0.0	0.04	15.15	0.00	2.415	5.18	2.05	7.9	92.1	0.0	-1.11	0.41	0.75	0.89	2.26	12355	1626	5	0	2	0	0	logfile
✔	8QK6	18457	2024-10-11	2023-09-14	3.18	3.70	2.81	3.4	0.005	0.57	0.0	0.05	9.59	0.00	2.154	4.31	1.09	1.5	98.5	0.0	4.06	0.63	0.76	2.53	3.3	0.003	0.56	0.0	0.04	13.31	0.00	2.395	6.07	1.73	2.2	97.8	0.0	3.59	0.99	0.60	0.90	2.31	10056	1230	12	0	6	0	0	logfile
✔	8WDA	37459	2024-10-13	2023-09-14	3.26	3.59	3.32	3.5	0.004	0.72	1.0	0.05	14.24	0.00	2.231	7.11	0.55	8.9	91.0	0.1	-4.40	0.75	0.88	2.94	3.5	0.004	0.88	0.0	0.04	15.06	0.00	2.418	4.66	1.18	7.2	92.8	0.0	-1.24	0.34	0.72	0.89	2.59	12359	1626	6	0	2	0	0	logfile
✔	8WDB	37460	2024-10-13	2023-09-14	2.86	3.12	2.90	3.0	0.008	0.89	2.0	0.05	13.65	0.01	2.006	4.68	0.55	7.9	91.7	0.4	-2.94	0.74	0.90	4.03	3.0	0.004	0.65	0.0	0.04	15.44	0.00	1.947	3.71	1.58	6.1	93.9	0.0	-0.01	0.38	0.73	0.91	3.22	12322	1619	5	0	4	0	0	logfile
✔	8QK3	18455	2024-10-10	2023-09-14	3.2	4.00	3.10	3.4	0.003	0.60	0.0	0.04	12.49	0.00	1.913	6.28	0.12	3.1	96.9	0.0	-0.49	0.87	0.81	3.51	3.4	0.004	0.78	0.0	0.05	14.56	0.00	2.480	9.46	2.12	3.9	96.1	0.0	-0.63	0.93	0.87	0.86	2.99	7535	955	5	0	0	0	0	logfile
✔	8WD8	37457	2024-10-12	2023-09-14	2.9	3.05	2.88	3.1	0.004	0.70	0.0	0.05	19.79	0.01	1.852	3.54	0.65	3.5	96.5	0.0	-1.91	0.77	0.89	2.83	3.1	0.003	0.53	0.0	0.04	20.00	0.00	1.960	4.83	1.81	2.5	97.5	0.0	0.97	0.93	0.70	0.89	3.32	13667	1500	9	64	7	0	0	logfile
✔	8WD6	37455	2024-10-10	2023-09-14	2.87	3.11	2.89	3.2	0.003	0.56	1.0	0.04	16.49	0.00	2.431	5.56	0.12	2.7	97.3	0.0	1.60	0.57	0.77	1.54	3.2	0.003	0.61	0.0	0.04	17.40	0.00	2.513	5.75	2.08	2.6	97.4	0.0	1.57	1.19	0.57	0.78	1.27	7973	1025	2	0	0	0	0	logfile
✔	8QJX	18453	2024-10-10	2023-09-14	3.3	3.68	3.02	3.3	0.005	0.59	0.0	0.05	13.62	0.00	1.871	5.41	0.00	3.7	96.3	0.0	-0.83	0.88	0.87	4.13	3.3	0.007	0.72	0.0	0.05	15.19	0.00	2.411	7.09	1.80	3.6	96.4	0.0	-0.67	0.79	0.88	0.88	3.54	7868	997	5	0	0	0	0	logfile
✔	8QJY	18454	2024-10-10	2023-09-14	3.5	4.18	3.43	3.7	0.003	0.61	0.0	0.05	13.67	0.00	1.682	8.80	0.14	2.7	97.3	0.0	-0.59	0.85	0.80	3.37	3.9	0.005	0.78	0.0	0.05	15.42	0.01	2.408	10.57	2.95	3.9	96.1	0.0	-0.56	0.93	0.87	0.85	2.77	6287	798	4	0	0	0	0	logfile
✔	8QJF	18446	2024-10-14	2023-09-13	2.86	3.33	2.60	3.1	0.005	0.58	0.0	0.05	10.05	0.00	2.238	3.68	0.57	1.6	98.4	0.0	3.35	0.65	0.74	2.87	3.0	0.004	0.86	2.0	0.04	13.79	0.00	1.968	6.35	0.95	1.4	98.6	0.0	3.59	0.72	0.64	0.91	2.86	19164	2352	24	0	12	0	0	logfile
✔	8U5X	41935	2024-10-09	2023-09-13	2.79	3.27	2.82	3.2	0.008	0.87	0.0	0.05	12.00	0.01	2.428	4.07	0.61	3.4	96.6	0.0	-0.95	0.72	0.82	3.61	3.2	0.004	0.87	0.0	0.05	16.08	0.00	2.274	15.50	1.63	2.3	97.7	0.0	2.01	2.63	0.68	0.80	2.52	4453	569	2	0	1	0	0	logfile
✘	8WCR	37447	2024-10-13	2023-09-13	2.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14615	1560	15	0	50	270	0	logfile

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