Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TXQ	41703	2024-10-11	2023-08-24	3.4	3.60	3.38	3.7	0.004	0.69	0.0	0.05	15.34	0.00	2.010	6.55	0.41	10.2	89.8	0.0	-2.70	0.64	0.72	2.81	3.7	0.004	0.62	0.0	0.05	15.75	0.00	2.289	6.55	4.69	11.8	88.2	0.0	-2.55	0.37	0.64	0.75	2.61	8851	610	4	0	0	0	4305	logfile
✔	8TXV	41706	2024-10-12	2023-08-24	3.8	4.05	3.67	3.9	0.003	0.56	0.0	0.03	26.65	0.00	1.329	7.46	0.14	2.3	97.7	0.0	2.47	0.85	0.86	1.11	3.9	0.004	0.61	0.0	0.03	27.30	0.00	2.130	8.58	3.19	2.5	97.5	0.0	2.51	0.48	0.87	0.88	1.17	12836	857	12	294	0	0	0	logfile
✘	8TYC	41713	2024-10-11	2023-08-24	3.3	3.96	3.46	3.7	0.021	1.75	0.0	0.15	16.24	0.02	2.365	2.90	0.00	3.1	96.9	0.0	0.44	0.75	0.78	2.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10628	1058	39	0	295	0	0	logfile
✔	8TXW	41707	2024-10-12	2023-08-24	3.6	3.90	3.54	3.7	0.004	0.54	0.0	0.03	26.88	0.00	1.328	7.51	0.14	2.0	98.0	0.0	2.65	0.85	0.87	0.96	3.7	0.005	0.60	0.0	0.03	27.47	0.00	2.102	6.39	1.66	2.4	97.4	0.2	2.32	0.34	0.88	0.89	0.57	12835	857	12	294	0	0	0	logfile
✔	8TXU	41705	2024-10-14	2023-08-24	3.22	3.61	3.48	3.6	0.005	0.94	0.0	0.06	17.72	0.01	1.731	8.16	0.37	8.1	91.9	0.0	-2.05	0.63	0.63	1.45	3.6	0.006	0.88	0.0	0.05	16.50	0.00	2.301	19.52	3.89	10.2	89.7	0.0	-2.54	1.25	0.67	0.73	1.46	17503	2163	23	0	44	0	0	logfile
✔	8TY6	41711	2024-10-11	2023-08-24	3.3	3.52	3.45	3.5	0.002	0.44	0.0	0.04	11.55	0.00	2.144	4.89	2.71	2.1	97.9	0.0	2.36	0.74	0.81	2.58	3.5	0.003	0.58	0.0	0.04	15.26	0.01	2.544	6.40	1.45	1.8	98.2	0.0	2.34	0.61	0.72	0.80	2.24	9678	1260	6	0	0	0	0	logfile
✔	8TXX	41708	2024-10-12	2023-08-24	3.7	3.96	3.60	3.8	0.004	0.55	0.0	0.03	26.69	0.00	1.329	8.69	0.00	2.9	97.1	0.0	2.62	0.86	0.88	1.17	3.8	0.004	0.58	0.0	0.03	27.47	0.00	2.065	7.29	2.31	3.2	96.8	0.0	2.64	1.39	0.87	0.89	0.88	12969	873	12	294	0	0	0	logfile
✘	8TXR	41704	2024-10-14	2023-08-24	3.8	3.13	—	1.5	0.004	0.46	0.0	0.04	11.55	0.00	1.930	3.65	0.59	1.8	98.2	0.0	0.92	0.88	0.81	1.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19020	2388	20	0	0	0	0	logfile
✔	8W4F	36904	2024-10-12	2023-08-24	4.2	9.65	3.95	8.2	0.026	2.68	41.0	0.12	11.76	0.01	2.158	1.62	0.12	6.5	92.3	1.2	-1.80	0.86	0.56	—	4.0	0.004	0.76	0.0	0.04	12.86	0.00	2.195	16.05	0.00	11.3	88.3	0.4	-2.71	1.13	0.90	0.75	—	60429	3951	6	0	0	0	29841	logfile
✔	8TXB	41679	2024-10-11	2023-08-23	3.9	4.67	—	3.9	0.012	1.13	4.0	0.05	13.61	0.01	2.101	12.59	0.57	7.2	91.8	1.0	-3.20	0.58	0.79	1.71	3.9	0.004	0.74	0.0	0.04	14.09	0.01	2.358	11.13	3.02	8.4	91.1	0.5	-1.62	0.59	0.58	0.80	1.66	54748	7576	4	0	0	0	0	logfile
✔	8W41	37260	2024-10-12	2023-08-23	3.54	2.42	3.62	2.0	0.008	0.91	2.0	0.06	15.40	0.01	1.918	17.98	1.63	5.0	94.9	0.1	-1.05	0.72	0.71	2.32	2.1	0.003	0.70	0.0	0.04	16.95	0.00	2.014	11.09	2.33	2.8	97.1	0.1	0.66	0.54	0.71	0.70	1.89	11859	1455	5	0	7	0	0	logfile
✘	8KiE	37258	2024-10-12	2023-08-23	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12424	600	5	361	30	0	0	logfile
✔	8QAU	18304	2024-10-11	2023-08-23	3.54	4.46	3.61	4.1	0.004	0.69	0.0	0.04	17.84	0.00	1.980	12.57	0.00	3.5	96.5	0.1	0.50	0.56	0.64	1.74	4.1	0.003	0.76	0.0	0.05	17.07	0.00	1.919	10.65	1.95	3.2	96.8	0.1	1.29	0.77	0.61	0.76	1.44	10137	1347	8	1	3	0	0	logfile
✔	8Ki7	37253	2024-10-14	2023-08-23	3.7	4.02	3.86	3.9	0.005	1.07	0.0	0.06	18.16	0.01	2.221	8.15	3.86	7.3	92.5	0.2	-2.08	0.75	0.70	0.86	3.9	0.004	0.84	0.0	0.05	18.46	0.00	2.393	18.66	3.65	8.1	91.8	0.2	-0.68	0.87	0.78	0.79	0.99	16784	2003	4	32	0	0	0	logfile
✔	8QAT	18302	2024-10-10	2023-08-23	3.2	2.97	3.18	3.4	0.005	1.03	0.0	0.05	16.20	0.01	2.192	3.47	0.35	1.9	98.0	0.1	-1.94	0.68	0.77	2.23	3.3	0.003	0.65	0.0	0.04	17.18	0.00	2.354	7.52	2.12	1.9	98.0	0.1	1.97	2.41	0.68	0.77	1.42	7758	970	4	0	0	0	0	logfile
✔	8KiA	37256	2024-10-12	2023-08-23	4.0	4.04	3.87	3.9	0.006	1.34	0.0	0.06	16.76	0.01	2.171	8.15	2.34	7.6	92.1	0.3	-2.64	0.73	0.71	—	3.9	0.003	0.84	0.0	0.05	17.18	0.00	2.224	16.53	3.65	7.7	92.1	0.2	-0.87	1.17	0.74	0.73	—	12717	1580	1	0	0	0	0	logfile
✔	8Ki6	37252	2024-10-12	2023-08-23	3.4	3.70	3.46	3.7	0.005	1.09	2.0	0.06	16.71	0.01	2.238	5.31	2.06	7.1	92.5	0.3	-1.93	0.71	0.72	0.99	3.7	0.004	0.69	0.0	0.04	17.17	0.00	2.443	8.56	3.65	6.9	92.9	0.2	-0.09	0.47	0.70	0.76	0.71	12751	1580	2	0	2	0	0	logfile
✔	8KiC	37257	2024-10-10	2023-08-23	2.5	3.35	2.69	3.1	0.005	0.82	0.0	0.05	17.67	0.01	2.171	5.51	3.54	2.3	97.3	0.4	-0.24	0.77	0.75	2.14	3.1	0.004	0.65	0.0	0.05	17.15	0.00	2.570	4.76	2.99	2.6	97.1	0.3	0.59	1.08	0.72	0.82	1.81	8589	1168	9	0	20	0	0	logfile
✔	8Ki8	37254	2024-10-12	2023-08-23	3.2	3.44	3.24	3.5	0.004	0.84	0.0	0.05	17.21	0.01	2.271	4.53	2.35	6.9	93.0	0.1	-1.88	0.73	0.76	1.74	3.4	0.002	0.60	0.0	0.04	17.42	0.00	2.409	7.39	3.55	6.2	93.7	0.1	0.20	0.32	0.72	0.78	1.77	13264	1621	2	10	0	0	0	logfile
✔	8TX3	41676	2024-10-14	2023-08-22	2.99	3.24	3.08	3.3	0.005	0.87	2.0	0.06	18.84	0.01	2.121	5.69	0.26	5.4	94.6	0.0	-1.17	0.65	0.83	3.50	3.2	0.004	0.65	0.0	0.05	15.28	0.00	2.451	6.52	2.00	5.7	94.3	0.0	-0.72	0.42	0.68	0.87	3.62	17923	2172	29	0	68	0	0	logfile

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