Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QA5	18299	2024-10-12	2023-08-22	3.14	3.29	3.20	3.3	0.016	1.94	17.0	0.17	15.49	0.01	2.267	2.48	1.48	4.7	95.1	0.1	-0.88	0.61	0.65	2.67	3.3	0.005	0.70	0.0	0.04	15.96	0.00	2.260	8.94	1.27	6.5	93.5	0.0	0.70	1.15	0.64	0.70	1.58	10376	814	4	0	1	0	4809	logfile
✔	8KHP	37247	2024-10-13	2023-08-22	3.67	4.90	3.71	3.6	0.002	0.62	0.0	0.04	11.29	0.00	2.213	5.29	0.00	3.2	96.3	0.4	1.44	0.86	0.80	1.59	3.6	0.002	0.53	0.0	0.04	12.67	0.00	2.485	3.96	0.65	3.8	96.1	0.1	1.62	1.27	0.90	0.87	1.29	16023	2702	6	0	0	0	0	logfile
✔	8QA4	18298	2024-10-10	2023-08-22	2.8	2.99	2.83	3.0	0.023	2.29	24.0	0.20	15.90	0.01	2.296	3.62	1.45	3.5	96.5	0.0	-2.38	0.63	0.78	3.60	3.0	0.003	0.65	0.0	0.04	18.13	0.01	2.427	6.84	1.69	3.3	96.7	0.0	0.01	1.57	0.60	0.80	2.79	7544	462	6	0	0	28	3724	logfile
✔	8TX1	41674	2024-10-13	2023-08-22	3.62	4.05	3.79	3.4	0.006	0.92	0.0	0.04	15.94	0.01	2.136	12.74	0.20	6.6	93.2	0.2	0.18	0.34	0.51	0.26	3.3	0.004	0.77	0.0	0.04	16.17	0.01	2.257	13.41	3.16	8.9	90.8	0.3	-1.16	1.48	0.35	0.56	0.75	13687	1894	1	0	0	0	0	logfile
✔	8QA6	18300	2024-10-14	2023-08-22	2.91	3.22	3.02	3.2	0.010	1.08	0.0	0.10	17.51	0.01	2.072	6.69	0.52	3.4	96.6	0.0	-0.54	0.60	0.80	3.35	3.2	0.003	0.58	0.0	0.04	17.62	0.00	2.359	5.57	1.25	2.3	97.7	0.0	1.76	0.92	0.61	0.81	2.97	17808	1106	4	0	6	0	8720	logfile
✔	8KHR	37249	2024-10-12	2023-08-22	3.25	3.87	3.24	3.7	0.003	0.63	0.0	0.04	16.93	0.00	2.125	8.14	0.62	7.9	92.1	0.0	-1.23	0.81	0.78	2.40	3.7	0.007	0.73	0.0	0.04	17.06	0.00	2.542	8.70	3.71	12.1	87.9	0.0	-1.76	0.41	0.83	0.83	2.25	8320	1138	5	0	0	0	0	logfile
✔	8TWE	41667	2024-10-12	2023-08-21	2.55	3.04	2.52	2.9	0.003	0.48	0.0	0.04	10.13	0.00	1.425	1.05	0.13	0.5	99.5	0.0	1.05	0.76	0.87	5.13	2.9	0.002	0.51	0.0	0.04	13.36	0.00	2.398	1.88	0.27	1.5	98.5	0.0	1.13	0.82	0.76	0.89	4.56	13319	833	4	0	0	0	6636	logfile
✘	8TWK	41669	2024-10-11	2023-08-21	2.6	2.88	2.70	2.9	0.003	0.51	0.0	0.04	16.48	0.00	2.140	10.30	2.34	1.8	98.2	0.0	1.70	0.57	0.81	4.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10800	1372	8	0	0	328	0	logfile
✘	8TWL	41670	2024-10-11	2023-08-21	2.7	2.90	2.72	2.9	0.003	0.50	0.0	0.04	16.84	0.00	2.155	11.06	2.34	1.4	98.6	0.0	1.43	0.60	0.83	3.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10800	1372	8	0	0	328	0	logfile
✔	8KHD	37241	2024-10-09	2023-08-21	3.5	3.86	4.16	3.8	0.004	0.88	0.0	0.05	13.42	0.01	2.287	8.30	0.00	7.3	92.5	0.2	-1.39	0.52	0.71	1.83	3.8	0.003	0.72	0.0	0.04	15.30	0.00	2.496	10.30	2.24	8.7	91.1	0.2	-0.90	0.56	0.53	0.73	1.52	3337	434	4	0	1	0	0	logfile
✘	8TWM	41671	2024-10-11	2023-08-21	2.6	2.85	2.66	2.9	0.003	0.54	0.0	0.04	16.70	0.00	2.158	11.58	1.89	2.2	97.8	0.0	1.47	0.57	0.81	3.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10800	1372	8	0	0	328	0	logfile
✔	8KH4	37236	2024-10-10	2023-08-21	3.1	3.38	3.16	3.4	0.009	1.01	9.0	0.08	14.02	0.01	2.049	16.56	0.40	2.8	97.2	0.0	0.62	0.59	0.72	2.53	3.4	0.003	0.62	0.0	0.04	15.21	0.00	2.501	9.17	2.42	2.0	98.0	0.0	1.16	1.15	0.64	0.77	2.12	7521	1001	6	0	1	0	0	logfile
✔	8TWV	41672	2024-10-12	2023-08-21	3.4	3.51	3.33	3.5	0.004	0.73	0.0	0.05	15.80	0.01	2.244	11.78	0.07	4.9	95.1	0.0	-1.53	0.66	0.83	2.48	3.5	0.004	0.56	0.0	0.05	16.40	0.00	2.245	3.80	3.39	4.5	95.5	0.0	0.24	0.41	0.71	0.86	2.13	12720	1550	10	0	5	0	0	logfile
✔	8TWZ	41673	2024-10-12	2023-08-21	3.17	3.17	3.11	3.2	0.004	0.71	0.0	0.05	14.02	0.01	2.309	5.99	0.00	7.6	92.4	0.0	-0.87	0.68	0.82	3.33	3.2	0.003	0.56	0.0	0.05	14.88	0.00	2.620	4.78	1.77	5.3	94.7	0.0	0.25	0.38	0.69	0.84	3.50	11270	1370	10	0	5	0	0	logfile
✔	8KHF	37243	2024-10-12	2023-08-21	3.13	3.56	3.30	3.5	0.006	0.67	0.0	0.04	12.89	0.00	2.169	8.59	0.00	3.1	96.9	0.0	-2.87	0.64	0.84	2.90	3.5	0.004	0.88	1.0	0.04	15.19	0.00	2.484	7.22	1.75	1.7	98.3	0.0	2.10	0.51	0.64	0.85	2.09	12128	1596	20	0	1	0	0	logfile
✔	8KH5	37237	2024-10-10	2023-08-21	2.83	3.13	2.90	3.2	0.008	0.85	1.0	0.08	12.85	0.01	2.103	11.08	0.26	2.9	97.1	0.0	0.90	0.59	0.74	3.40	3.1	0.003	0.57	0.0	0.04	15.12	0.00	2.534	8.08	1.67	2.1	97.9	0.0	1.42	1.24	0.60	0.78	3.41	7838	1031	6	0	2	0	0	logfile
✔	8TWi	41668	2024-10-10	2023-08-21	2.69	3.44	2.68	3.2	0.002	0.46	0.0	0.04	9.78	0.00	2.049	1.24	0.67	2.2	97.8	0.0	1.15	0.77	0.81	4.65	3.2	0.003	0.58	0.0	0.04	12.70	0.00	1.975	5.44	0.22	3.0	97.0	0.0	1.68	1.78	0.77	0.84	4.08	8096	510	4	0	2	0	4023	logfile
✔	8Q9C	18276	2024-10-09	2023-08-20	3.4	3.58	3.33	3.5	0.011	1.96	1.0	0.09	9.22	0.01	2.524	0.00	0.00	5.9	94.1	0.0	-2.98	0.33	0.78	5.62	3.5	0.004	0.69	0.0	0.05	14.12	0.00	2.595	4.84	3.54	2.1	97.9	0.0	-1.98	2.73	0.34	0.84	5.13	3444	450	6	0	0	0	0	logfile
✔	8Q99	18272	2024-10-10	2023-08-20	2.7	2.49	2.59	2.7	0.011	1.82	0.0	0.10	11.76	0.01	2.486	0.00	0.00	2.7	97.3	0.0	-2.40	0.42	0.84	5.68	2.7	0.002	0.60	0.0	0.05	15.07	0.00	2.539	1.66	1.61	0.5	99.5	0.0	-1.57	1.57	0.40	0.88	6.04	6642	426	6	0	0	0	3396	logfile
✔	8Q9F	18279	2024-10-10	2023-08-20	1.91	1.89	1.88	1.9	0.011	1.78	0.0	0.09	10.30	0.01	2.515	0.00	0.00	0.2	99.8	0.0	-2.15	0.31	0.73	7.64	1.9	0.003	0.63	0.0	0.05	14.58	0.00	2.484	2.35	0.56	2.5	97.5	0.0	-2.15	1.18	0.43	0.85	7.32	6390	414	6	0	0	0	3258	logfile

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