Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8ZFM	60065	2024-10-14	2024-05-08	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17120	2060	25	0	30	10	0	logfile
✔	9BP6	44762	2024-10-13	2024-05-07	3.1	3.37	3.02	3.3	0.005	0.88	0.0	0.05	16.03	0.01	1.963	3.03	0.14	2.7	97.3	0.0	0.29	0.66	0.75	3.00	3.3	0.003	0.58	0.0	0.04	17.08	0.00	1.926	5.58	2.75	2.2	97.8	0.0	0.64	0.67	0.74	0.83	3.09	13631	1732	8	0	8	0	0	logfile
✔	8ZEE	60026	2024-10-15	2024-05-06	2.9	2.66	2.99	3.3	0.007	1.19	0.0	0.04	18.03	0.01	2.080	5.25	0.00	2.7	97.2	0.1	1.55	0.78	0.82	2.75	3.3	0.004	0.61	0.0	0.04	16.89	0.00	2.334	5.69	1.53	3.5	96.5	0.0	1.59	0.41	0.79	0.85	2.47	20218	2101	26	0	70	0	0	logfile
✔	8ZDV	60014	2024-10-12	2024-05-03	2.8	3.02	2.82	3.1	0.006	0.84	0.0	0.06	14.60	0.01	2.022	8.78	0.00	1.8	98.2	0.0	-0.56	0.73	0.78	4.03	3.1	0.004	0.69	0.0	0.05	15.57	0.00	2.469	9.06	1.86	3.5	96.5	0.0	-0.92	0.45	0.72	0.80	4.26	12210	1473	15	0	33	0	0	logfile
✔	9F6L	50228	2024-10-11	2024-05-01	3.9	4.20	3.90	4.1	0.003	0.67	0.0	0.04	16.41	0.01	2.141	1.48	0.00	1.9	98.1	0.0	-1.02	0.75	0.80	1.37	4.1	0.002	0.61	0.0	0.04	17.93	0.00	2.339	4.32	1.11	1.5	98.5	0.0	1.49	0.69	0.76	0.82	0.71	9639	1118	4	26	3	0	0	logfile
✔	9F6J	50226	2024-10-11	2024-05-01	3.9	4.11	3.87	4.0	0.003	0.64	0.0	0.04	16.08	0.01	2.253	1.83	0.00	1.1	98.9	0.0	-1.09	0.75	0.79	1.83	4.0	0.003	0.62	0.0	0.04	17.92	0.00	2.525	4.86	2.12	2.2	97.8	0.0	0.64	1.68	0.76	0.81	1.61	9751	1118	4	32	1	0	0	logfile
✘	9BKJ	44642	2024-10-10	2024-04-29	2.59	2.90	2.70	2.9	0.005	0.75	0.0	0.05	12.93	0.00	2.260	9.17	0.71	2.0	97.8	0.2	1.02	0.61	0.68	3.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6795	891	6	0	1	0	0	logfile
✔	9BKK	44643	2024-10-10	2024-04-29	2.51	2.85	2.68	2.9	0.012	1.75	2.0	0.10	12.29	0.01	2.388	6.33	2.54	4.5	94.6	0.9	-1.67	0.46	0.61	2.41	2.9	0.003	0.61	0.0	0.04	16.12	0.00	2.424	5.36	2.25	2.3	97.7	0.0	1.51	1.15	0.56	0.73	2.12	6809	890	6	0	1	0	0	logfile
✔	8ZCJ	39931	2024-10-10	2024-04-29	3.09	3.33	3.11	3.4	0.007	0.93	1.0	0.05	16.04	0.01	2.258	9.36	0.44	5.3	94.6	0.1	-1.54	0.62	0.69	1.51	3.3	0.003	0.69	0.0	0.04	16.47	0.00	2.245	9.43	3.67	4.7	95.3	0.0	-1.15	1.14	0.63	0.70	1.96	7808	1126	7	0	1	0	0	logfile
✔	8ZC1	39919	2024-10-09	2024-04-28	4.17	4.43	4.20	4.3	0.003	0.75	0.0	0.05	13.38	0.01	2.313	5.92	0.00	4.3	95.7	0.0	-1.66	0.73	0.72	—	4.3	0.003	0.65	0.0	0.05	13.45	0.00	2.494	9.72	0.00	5.8	94.2	0.0	-1.44	0.60	0.74	0.74	—	4570	597	3	0	0	0	0	logfile
✔	8ZC5	39923	2024-10-10	2024-04-28	3.91	4.07	3.86	4.0	0.004	0.76	0.0	0.05	13.55	0.01	2.258	4.88	0.00	4.4	95.6	0.0	-1.55	0.74	0.78	2.73	4.0	0.003	0.67	0.0	0.05	14.99	0.00	2.515	8.18	1.71	4.4	95.6	0.0	-0.90	1.46	0.74	0.79	2.49	6515	830	8	0	2	0	0	logfile
✔	8ZBQ	39907	2024-10-10	2024-04-27	3.03	3.22	3.02	3.2	0.006	0.92	2.0	0.05	16.51	0.01	2.261	24.87	6.41	9.8	90.2	0.0	-2.05	0.66	0.78	2.44	3.2	0.003	0.64	0.0	0.04	17.04	0.00	2.475	12.59	4.08	6.7	93.3	0.0	-0.95	1.28	0.66	0.80	2.32	6346	779	2	0	0	0	0	logfile
✔	9F44	50183	2024-10-11	2024-04-26	3.68	4.36	3.71	3.9	0.003	0.51	0.0	0.04	13.42	0.00	2.161	7.02	1.65	2.7	97.3	0.0	2.01	0.90	0.80	0.86	4.0	0.003	0.67	0.0	0.04	14.94	0.00	2.399	11.19	1.46	2.8	97.1	0.1	1.53	0.61	0.90	0.82	0.90	56848	7140	10	0	2	0	0	logfile
✔	8ZBA	39899	2024-10-11	2024-04-26	3.57	3.81	3.60	3.8	0.003	0.59	0.0	0.04	13.82	0.00	2.234	8.37	0.00	10.7	89.3	0.0	-2.46	0.70	0.76	2.09	3.8	0.004	0.69	0.0	0.05	16.70	0.00	2.433	9.24	3.08	10.9	89.0	0.1	-2.51	2.02	0.72	0.79	1.88	9973	1267	4	0	0	0	0	logfile
✘	9F43	50182	2024-10-10	2024-04-26	3.49	3.69	3.45	3.7	0.002	0.49	0.0	0.04	14.27	0.00	2.074	5.62	0.21	2.3	97.7	0.0	1.09	0.63	0.77	1.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8465	1061	2	0	0	0	0	logfile
✔	9F42	50181	2024-10-10	2024-04-26	3.27	3.49	3.23	3.5	0.002	0.48	0.0	0.04	12.23	0.00	2.189	6.92	1.81	3.0	97.0	0.0	0.35	0.59	0.74	2.02	3.5	0.003	0.58	0.0	0.04	15.14	0.00	2.580	10.58	3.20	3.9	96.1	0.0	0.07	1.42	0.55	0.74	2.15	8465	1061	2	0	0	0	0	logfile
✔	9F45	50184	2024-10-11	2024-04-26	3.74	4.61	—	3.8	0.003	0.50	0.0	0.04	11.49	0.00	2.145	8.38	2.01	2.6	97.3	0.1	2.22	0.90	0.81	0.74	3.8	0.003	0.65	0.0	0.04	13.72	0.00	2.302	10.92	1.65	2.8	97.2	0.0	1.76	1.49	0.91	0.83	0.90	56848	7140	10	0	2	0	0	logfile
✔	8ZB9	39898	2024-10-09	2024-04-26	3.31	3.44	3.32	3.5	0.007	0.87	0.0	0.05	16.83	0.01	2.267	16.36	0.37	14.2	85.8	0.0	-3.11	0.73	0.86	3.12	3.5	0.003	0.62	0.0	0.04	17.55	0.00	2.534	6.92	5.16	9.3	90.7	0.0	-2.10	0.43	0.72	0.84	3.11	4904	622	2	0	0	0	0	logfile
✔	8ZBE	39901	2024-10-10	2024-04-26	3.24	3.44	3.22	3.4	0.005	0.90	0.0	0.05	15.39	0.00	2.276	11.65	0.00	6.2	93.8	0.0	-2.05	0.60	0.66	0.71	3.4	0.003	0.63	0.0	0.04	16.15	0.00	2.550	8.10	5.82	5.2	94.8	0.0	-0.93	0.44	0.61	0.67	1.04	7489	1113	7	0	1	0	0	logfile
✘	8ZAo	39882	2024-10-10	2024-04-25	2.6	3.07	2.73	3.0	0.003	0.57	0.0	0.04	15.64	0.01	1.601	7.52	1.64	1.2	98.8	0.0	1.98	0.53	0.85	5.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6432	777	9	0	18	30	0	logfile

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