Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8ZAP	39883	2024-10-10	2024-04-25	2.6	2.77	2.58	2.8	0.003	0.60	0.0	0.04	16.03	0.01	1.487	8.32	4.19	2.6	97.4	0.0	1.24	0.71	0.89	4.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6442	776	9	0	27	36	0	logfile
✘	8ZAM	39880	2024-10-09	2024-04-25	2.5	2.87	2.53	2.8	0.007	0.87	0.0	0.04	22.82	0.01	2.265	9.50	2.46	5.3	94.7	0.0	1.70	0.60	0.88	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4000	492	4	0	2	0	0	logfile
✘	8ZAN	39881	2024-10-09	2024-04-25	2.4	2.80	2.50	2.7	0.003	0.65	0.0	0.04	17.05	0.01	2.309	9.70	2.96	5.3	93.4	1.2	1.81	0.65	0.89	4.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3938	492	4	0	2	0	0	logfile
✘	8ZAQ	39884	2024-10-10	2024-04-25	2.6	2.80	2.62	2.8	0.003	0.59	0.0	0.04	16.95	0.01	1.092	8.94	2.39	2.6	97.4	0.0	1.48	0.69	0.89	4.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6449	776	9	0	27	36	0	logfile
✔	9BiT	44601	2024-10-11	2024-04-24	3.1	3.27	3.05	3.2	0.003	0.60	0.0	0.04	18.48	0.01	2.073	6.13	1.60	6.8	93.2	0.0	-0.05	0.60	0.83	2.75	3.2	0.003	0.57	0.0	0.04	18.31	0.00	2.248	4.97	2.80	6.8	93.2	0.0	0.47	0.32	0.63	0.85	2.60	9448	595	3	0	1	0	4734	logfile
✔	8Z9Z	39873	2024-10-12	2024-04-24	3.5	3.90	3.63	3.8	0.002	0.48	0.0	0.04	18.14	0.00	2.209	9.03	0.29	2.5	97.5	0.0	3.18	0.61	0.77	1.29	3.8	0.003	0.49	0.0	0.04	18.32	0.00	2.441	7.82	3.77	2.3	97.7	0.0	3.23	0.28	0.61	0.79	1.33	12648	1519	8	0	6	0	0	logfile
✔	9BiS	44600	2024-10-11	2024-04-24	3.2	3.55	3.16	3.4	0.004	0.78	0.0	0.04	18.67	0.00	1.376	7.08	0.40	8.7	91.3	0.0	0.07	0.59	0.82	2.90	3.4	0.003	0.57	0.0	0.04	18.34	0.00	2.278	4.65	1.60	7.0	93.0	0.0	0.77	0.78	0.61	0.84	3.10	9444	595	3	0	1	0	4734	logfile
✔	9BiU	44602	2024-10-11	2024-04-24	2.9	3.33	2.90	3.2	0.003	0.56	0.0	0.04	17.10	0.00	2.204	4.85	2.00	7.0	93.0	0.0	0.77	0.63	0.84	2.63	3.2	0.003	0.59	0.0	0.04	17.16	0.00	2.278	5.49	2.59	6.5	93.5	0.0	0.80	0.83	0.62	0.85	2.50	9458	595	3	0	1	0	4738	logfile
✔	9BiB	44586	2024-10-15	2024-04-23	3.81	4.09	3.87	4.0	0.004	0.63	12.0	0.06	7.50	0.00	2.200	3.34	4.65	3.0	96.9	0.1	-2.18	0.64	0.64	1.95	4.0	0.002	0.57	0.0	0.04	11.64	0.00	2.425	3.52	3.72	4.1	95.9	0.0	0.70	0.65	0.68	0.71	1.94	19269	3172	8	0	0	0	0	logfile
✔	8Z9Q	39867	2024-10-12	2024-04-23	2.33	2.83	2.42	2.7	0.003	0.53	0.0	0.04	13.21	0.00	2.117	8.28	0.00	3.5	96.5	0.0	0.58	0.70	0.83	4.40	2.7	0.003	0.58	0.0	0.04	15.99	0.00	2.492	6.78	1.11	3.4	96.6	0.0	0.79	0.37	0.71	0.85	4.10	12362	1505	4	9	1	0	0	logfile
✔	9F2K	50149	2024-10-13	2024-04-23	2.48	2.66	2.53	2.7	0.004	0.64	0.0	0.04	16.42	0.00	2.026	10.48	1.14	2.2	97.8	0.0	-0.09	0.65	0.83	4.08	2.7	0.005	0.68	0.0	0.05	16.61	0.00	2.495	6.14	2.63	2.0	98.0	0.0	0.58	0.89	0.66	0.84	4.91	16184	2052	8	0	4	0	0	logfile
✘	9BHT	44552	2024-10-12	2024-04-22	3.26	4.41	3.27	3.3	0.006	1.13	4.0	0.05	19.39	0.01	2.058	21.47	2.05	6.0	93.0	1.0	-0.68	0.84	0.70	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12725	1562	12	4	2	0	0	logfile
✔	8Z8J	39848	2024-10-13	2024-04-22	3.16	3.46	3.17	3.4	0.002	0.55	0.0	0.04	13.58	0.01	2.218	9.57	0.00	4.7	95.3	0.0	-0.26	0.79	0.87	2.49	3.4	0.002	0.58	0.0	0.04	15.32	0.00	2.337	8.07	1.20	4.7	95.3	0.0	0.31	0.38	0.81	0.89	2.31	13766	1665	5	15	0	0	0	logfile
✔	9BHW	44555	2024-10-10	2024-04-22	2.72	3.56	2.84	3.3	0.005	0.72	0.0	0.05	14.14	0.00	2.158	6.79	0.31	2.0	98.0	0.0	0.77	0.85	0.86	4.93	3.3	0.004	0.62	0.0	0.04	15.95	0.00	2.467	4.73	1.13	2.1	97.9	0.0	2.06	0.68	0.79	0.85	3.99	8759	1071	8	4	0	0	0	logfile
✔	8Z8X	39850	2024-10-13	2024-04-22	3.06	3.36	3.12	3.3	0.003	0.61	0.0	0.04	14.96	0.01	2.148	12.31	0.00	4.9	95.1	0.0	-0.67	0.80	0.87	2.83	3.3	0.003	0.62	0.0	0.04	16.40	0.00	2.470	8.61	1.41	4.8	95.2	0.0	-0.03	1.34	0.81	0.90	2.80	14768	1730	6	35	1	0	0	logfile
✔	8Z8N	39849	2024-10-12	2024-04-22	2.79	3.11	2.79	3.0	0.003	0.56	0.0	0.04	12.85	0.01	2.114	10.07	0.00	4.2	95.8	0.0	-0.39	0.75	0.84	2.78	3.0	0.004	0.67	0.0	0.04	16.18	0.01	2.444	8.46	1.77	4.3	95.7	0.0	-0.21	1.35	0.77	0.87	2.84	12485	1510	5	15	0	0	0	logfile
✔	8Z90	39852	2024-10-13	2024-04-22	2.87	3.20	2.88	3.1	0.003	0.67	0.0	0.04	14.44	0.01	2.113	10.76	0.00	3.8	96.2	0.0	-0.73	0.81	0.88	3.65	3.1	0.003	0.65	0.0	0.04	16.79	0.00	2.499	9.14	1.13	3.9	96.1	0.0	0.26	1.01	0.80	0.89	3.31	13481	1575	6	35	1	0	0	logfile
✔	8Z85	39838	2024-10-12	2024-04-21	2.3	2.74	2.30	2.6	0.002	0.48	0.0	0.04	13.26	0.00	2.234	7.19	0.00	2.4	97.6	0.0	0.02	0.79	0.86	4.75	2.6	0.002	0.53	0.0	0.04	15.44	0.00	2.467	6.08	1.07	2.2	97.8	0.0	0.96	1.10	0.79	0.87	4.18	10467	1256	5	18	0	0	0	logfile
✔	8Z7N	39820	2024-10-14	2024-04-20	3.58	3.87	3.60	3.6	0.010	1.35	0.0	0.07	22.40	0.01	1.848	53.22	29.65	22.6	76.7	0.7	-5.94	0.61	0.50	0.67	3.6	0.004	0.96	0.0	0.05	18.54	0.01	2.452	20.66	4.49	14.0	86.0	0.0	-3.47	1.86	0.62	0.52	0.60	16641	2094	15	0	18	0	0	logfile
✘	9BHB	44539	2024-10-09	2024-04-19	3.1	3.25	2.99	3.3	0.006	0.81	0.0	0.05	13.80	0.01	2.274	5.99	0.35	6.6	93.4	0.0	-2.11	0.60	0.83	4.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2626	328	3	0	0	0	0	logfile

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