Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PD5	17601	2024-12-28	2023-06-11	3.4	2.30	3.32	2.1	0.003	0.53	0.0	0.04	13.12	0.00	2.148	2.18	0.00	2.2	97.8	0.0	1.83	0.61	0.77	2.43	2.1	0.003	0.51	0.0	0.04	15.85	0.00	2.597	4.06	2.28	1.7	98.3	0.0	2.40	0.97	0.68	0.81	2.22	8093	1024	1	0	0	0	0	logfile
✔	8PD3	17599	2024-12-28	2023-06-11	3.3	2.29	3.23	2.1	0.003	0.56	0.0	0.04	13.67	0.00	2.227	4.23	0.00	1.3	98.7	0.0	0.70	0.61	0.78	2.84	2.1	0.004	0.56	0.0	0.04	15.70	0.00	2.543	4.41	2.15	1.7	98.3	0.0	2.30	0.96	0.67	0.81	2.04	8121	1028	1	0	0	0	0	logfile
✔	8JP9	36472	2024-12-30	2023-06-10	3.37	3.55	3.41	3.5	0.003	0.51	0.0	0.04	16.11	0.00	1.666	2.44	0.14	2.9	97.1	0.0	-0.23	0.82	0.82	2.68	3.5	0.003	0.70	0.0	0.05	17.29	0.00	2.055	7.19	2.49	3.3	96.7	0.0	-0.14	1.26	0.83	0.84	2.23	13500	1678	16	0	20	0	0	logfile
✔	8JP7	36470	2024-12-30	2023-06-10	3.51	3.68	3.53	3.6	0.005	0.64	0.0	0.05	17.39	0.00	1.606	5.68	0.62	4.3	95.7	0.0	-0.06	0.80	0.81	2.69	3.6	0.005	0.76	0.0	0.05	17.66	0.00	2.044	9.42	2.22	4.3	95.7	0.0	0.10	1.28	0.83	0.83	2.54	13476	1674	16	0	20	0	0	logfile
✔	8JP8	36471	2024-12-30	2023-06-10	3.39	3.56	3.42	3.5	0.002	0.52	0.0	0.04	16.26	0.00	1.774	2.78	0.07	2.7	97.3	0.0	0.20	0.81	0.82	2.71	3.5	0.003	0.72	0.0	0.05	17.40	0.00	2.063	7.53	2.49	3.3	96.7	0.0	-0.16	0.83	0.84	0.85	2.74	13500	1678	16	0	20	0	0	logfile
✔	8JP5	36468	2024-12-30	2023-06-10	2.59	2.78	2.63	3.1	0.003	0.58	0.0	0.05	17.36	0.00	1.524	5.03	2.35	3.4	96.6	0.0	-0.20	0.73	0.77	2.58	3.0	0.003	0.66	0.0	0.05	18.12	0.00	2.079	7.16	3.32	2.7	97.3	0.0	0.18	0.52	0.74	0.80	2.75	13490	1676	16	0	20	0	0	logfile
✔	8JP6	36469	2024-12-30	2023-06-10	3.29	3.43	3.30	3.3	0.003	0.59	0.0	0.05	16.63	0.00	1.720	4.45	0.14	3.8	96.2	0.0	0.12	0.82	0.85	3.09	3.4	0.004	0.73	0.0	0.05	17.74	0.00	2.051	7.04	1.73	4.4	95.6	0.0	-0.05	0.61	0.83	0.87	2.95	13500	1678	16	0	20	0	0	logfile
✔	8T4E	41028	2024-12-28	2023-06-09	3.5	3.74	3.32	3.7	0.003	0.65	0.0	0.04	16.23	0.00	2.286	5.50	0.28	2.8	97.2	0.0	1.81	0.58	0.73	0.37	3.7	0.003	0.56	0.0	0.04	16.44	0.00	2.467	4.63	3.10	2.1	97.9	0.0	3.13	0.41	0.68	0.80	0.75	7714	1089	3	0	0	0	0	logfile
✔	8T4F	41029	2024-12-28	2023-06-09	3.5	3.67	3.43	3.6	0.003	0.57	0.0	0.04	15.37	0.00	2.243	3.32	0.56	1.7	98.3	0.0	1.99	0.67	0.80	1.74	3.6	0.003	0.57	0.0	0.04	16.35	0.00	2.584	3.39	2.79	2.0	98.0	0.0	2.60	0.77	0.67	0.81	1.43	7793	1097	3	0	0	0	0	logfile
✔	8T4G	41030	2024-12-28	2023-06-09	3.5	3.76	3.37	3.7	0.003	0.53	0.0	0.04	15.82	0.00	2.254	5.37	0.14	2.2	97.8	0.0	2.80	0.68	0.82	1.39	3.7	0.003	0.53	0.0	0.04	16.52	0.00	2.520	4.16	3.25	1.9	98.1	0.0	3.07	0.22	0.67	0.82	1.57	7721	1089	3	0	0	0	0	logfile
✔	8T4K	41034	2024-12-30	2023-06-09	2.6	2.78	2.58	2.8	0.007	1.10	0.0	0.07	13.19	0.01	1.281	1.04	0.62	0.9	98.9	0.2	0.97	0.68	0.84	5.26	2.8	0.004	0.62	0.0	0.05	15.16	0.00	2.543	4.94	2.27	1.4	98.6	0.0	1.16	0.38	0.71	0.86	4.74	13560	1638	12	0	39	0	0	logfile
✔	8T4J	41033	2024-12-28	2023-06-09	3.9	4.16	3.61	4.0	0.002	0.60	0.0	0.04	13.69	0.00	2.275	5.11	0.28	1.8	98.2	0.0	0.48	0.65	0.79	0.89	4.0	0.003	0.63	0.0	0.04	15.54	0.00	2.432	6.64	3.52	1.3	98.7	0.0	1.34	0.99	0.67	0.80	0.58	7824	1107	3	0	0	0	0	logfile
✔	8PC6	17595	2024-12-30	2023-06-09	3.04	3.48	3.06	3.1	0.004	0.68	0.0	0.04	28.54	0.01	2.142	7.87	0.13	2.2	97.8	0.0	0.83	0.89	0.83	2.36	3.1	0.003	0.57	0.0	0.03	27.26	0.00	2.186	8.19	0.25	2.6	97.4	0.0	2.20	1.33	0.93	0.91	2.69	13493	939	12	294	0	0	0	logfile
✔	8PBX	17587	2024-12-27	2023-06-09	3.3	3.77	3.44	3.7	0.005	0.59	0.0	0.04	15.13	0.00	1.897	11.63	0.26	6.5	93.4	0.0	-0.66	0.70	0.75	2.64	3.7	0.005	0.59	0.0	0.04	15.61	0.00	2.297	9.30	1.31	7.3	92.6	0.1	-1.10	0.31	0.67	0.74	2.46	33448	2187	2	0	0	0	16455	logfile
✔	8PBY	17588	2024-12-27	2023-06-09	3.7	4.03	3.80	4.0	0.003	0.56	0.0	0.04	13.88	0.00	1.886	18.49	0.05	8.4	91.4	0.2	-2.20	0.65	0.59	1.00	4.0	0.005	0.67	0.0	0.04	15.56	0.01	2.209	16.25	1.25	12.2	87.6	0.2	-2.55	1.60	0.68	0.63	0.93	33480	2187	2	0	0	0	16474	logfile
✔	8PC5	17594	2024-12-30	2023-06-09	3.02	3.37	3.06	3.0	0.006	0.79	0.0	0.06	29.26	0.01	2.205	7.09	0.42	1.9	98.1	0.0	1.05	0.90	0.86	3.01	3.0	0.004	0.59	0.0	0.03	27.74	0.00	2.366	5.88	0.98	2.5	97.5	0.0	2.40	1.95	0.93	0.91	2.45	12836	853	11	294	0	0	0	logfile
✔	8T4H	41031	2024-12-28	2023-06-09	3.8	3.97	3.47	3.9	0.004	0.76	0.0	0.04	15.55	0.00	2.267	5.59	0.57	2.2	97.8	0.0	1.54	0.62	0.75	0.99	3.9	0.003	0.59	0.0	0.04	16.60	0.00	2.563	5.72	4.26	2.0	98.0	0.0	2.52	0.96	0.67	0.80	0.92	7702	1088	3	0	0	0	0	logfile
✘	8PBB	17583	2024-12-30	2023-06-09	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13334	1684	6	0	2	0	0	logfile
✔	8JoU	36462	2024-12-30	2023-06-08	4.1	6.13	3.95	3.9	0.004	0.83	0.0	0.05	12.09	0.01	0.972	16.82	0.49	7.7	90.4	1.9	-1.54	0.17	0.37	—	3.1	0.005	0.78	0.0	0.04	12.09	0.01	0.891	24.95	0.02	9.4	88.9	1.7	-1.90	1.55	0.23	0.86	—	62425	8135	70	0	590	0	0	logfile
✘	8T3Y	41016	2024-12-30	2023-06-08	3.47	3.65	3.22	3.4	0.004	0.64	0.0	0.04	26.54	0.00	2.284	6.78	1.74	2.8	97.2	0.0	-1.27	0.87	0.87	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13001	886	14	292	4	0	0	logfile

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