Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JoU	36462	2024-12-30	2023-06-08	4.1	6.13	3.95	3.9	0.004	0.83	0.0	0.05	12.09	0.01	0.972	16.82	0.49	7.7	90.4	1.9	-1.54	0.17	0.37	—	3.1	0.005	0.78	0.0	0.04	12.09	0.01	0.891	24.95	0.02	9.4	88.9	1.7	-1.90	1.55	0.23	0.86	—	62425	8135	70	0	590	0	0	logfile
✘	8T3Y	41016	2024-12-30	2023-06-08	3.47	3.65	3.22	3.4	0.004	0.64	0.0	0.04	26.54	0.00	2.284	6.78	1.74	2.8	97.2	0.0	-1.27	0.87	0.87	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13001	886	14	292	4	0	0	logfile
✔	8JoN	36461	2024-12-26	2023-06-07	2.51	2.64	2.48	2.7	0.004	0.63	0.0	0.05	18.40	0.00	1.586	11.75	2.41	3.6	96.4	0.0	0.15	0.42	0.73	2.99	2.6	0.006	0.69	0.0	0.04	18.42	0.00	1.723	8.89	2.41	3.2	96.8	0.0	0.03	2.30	0.60	0.85	4.57	45942	2910	12	0	24	0	22716	logfile
✔	8T3V	41013	2024-12-28	2023-06-07	3.39	3.88	3.56	3.9	0.005	0.81	0.0	0.05	15.86	0.01	2.175	11.45	0.44	2.6	97.4	0.0	0.38	0.52	0.64	0.69	3.9	0.003	0.65	0.0	0.04	16.57	0.00	2.484	8.56	3.60	3.2	96.8	0.0	0.92	0.75	0.57	0.81	2.07	8742	1136	6	0	2	0	0	logfile
✔	8T3T	41011	2024-12-30	2023-06-07	3.21	3.55	3.10	3.3	0.004	0.60	0.0	0.04	27.44	0.00	2.202	7.81	0.27	2.9	97.1	0.0	0.21	0.89	0.91	2.14	3.3	0.004	0.57	0.0	0.03	27.32	0.00	2.500	4.92	3.62	3.1	96.9	0.0	1.43	0.24	0.89	0.92	1.36	12991	885	14	292	4	0	0	logfile
✔	8Jo3	36454	2024-12-27	2023-06-07	2.66	2.82	2.65	2.8	0.003	0.53	0.0	0.04	18.82	0.00	2.196	9.66	2.56	1.4	98.6	0.0	1.75	0.70	0.82	3.43	2.8	0.004	0.56	0.0	0.04	18.55	0.00	2.337	7.12	3.04	1.6	98.4	0.0	1.69	0.24	0.70	0.82	3.67	5715	709	4	0	3	0	0	logfile
✘	8T3Q	41008	2024-12-28	2023-06-07	3.14	3.59	3.25	3.6	0.008	1.15	2.0	0.07	14.66	0.01	2.144	11.89	1.75	4.3	95.6	0.1	-1.14	0.45	0.67	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9035	1159	6	0	1	0	0	logfile
✔	8Jo4	36455	2024-12-27	2023-06-07	3.04	3.24	3.06	3.2	0.004	0.59	0.0	0.05	13.29	0.00	2.202	9.05	3.21	2.0	97.9	0.1	1.06	0.71	0.78	3.68	3.2	0.003	0.54	0.0	0.04	15.91	0.00	2.396	8.96	1.93	1.8	98.2	0.0	1.77	0.48	0.69	0.77	3.21	5719	709	4	0	4	0	0	logfile
✔	8T3W	41015	2024-12-30	2023-06-07	3.25	3.53	3.11	3.3	0.004	0.64	0.0	0.04	26.53	0.00	2.284	6.74	1.74	2.8	97.2	0.0	-1.27	0.88	0.88	2.25	3.3	0.003	0.60	0.0	0.03	27.16	0.00	2.445	4.92	3.22	2.1	97.9	0.0	0.89	0.55	0.90	0.92	2.22	13001	886	14	292	4	0	0	logfile
✔	8T3S	41010	2024-12-28	2023-06-07	3.07	3.44	3.18	3.4	0.005	0.75	1.0	0.05	15.22	0.00	2.185	9.29	0.53	2.5	97.5	0.0	0.78	0.63	0.85	2.72	3.4	0.004	0.57	0.0	0.04	15.57	0.00	2.367	7.86	3.84	2.2	97.8	0.0	1.35	0.91	0.60	0.85	2.78	8769	1119	6	0	4	0	0	logfile
✔	8JoL	36459	2024-12-28	2023-06-07	3.0	3.98	2.98	3.4	0.009	1.46	0.0	0.07	18.20	0.01	2.214	35.79	16.43	12.3	86.8	0.8	-4.77	0.56	0.70	0.79	3.4	0.003	0.82	0.0	0.04	16.66	0.00	2.003	7.62	1.43	3.6	96.4	0.0	0.69	2.15	0.62	0.87	1.21	8513	1087	5	0	4	0	0	logfile
✔	8T2R	40985	2024-12-31	2023-06-06	3.1	3.34	3.14	3.3	0.006	0.96	0.0	0.05	25.03	0.01	2.174	4.24	1.15	3.1	96.3	0.5	-2.13	0.68	0.83	2.96	3.3	0.003	0.62	0.0	0.03	24.53	0.00	2.166	8.23	4.32	3.1	96.3	0.5	1.03	0.40	0.74	0.86	2.90	15063	388	4	552	15	0	0	logfile
✔	8T2T	40987	2024-12-31	2023-06-06	3.0	3.39	3.19	9.5	0.006	0.97	0.0	0.05	24.84	0.01	1.982	4.25	0.00	4.5	95.0	0.5	-1.78	0.45	0.06	0.14	3.0	0.007	1.14	0.0	0.05	26.47	0.01	1.703	28.77	2.93	6.3	93.7	0.0	-2.26	2.53	0.74	0.69	1.62	14876	387	5	546	12	0	0	logfile
✔	8T2S	40986	2024-12-31	2023-06-06	3.0	3.20	3.02	3.2	0.004	0.89	0.0	0.04	24.68	0.01	2.251	3.85	2.04	2.9	97.1	0.0	-2.71	0.64	0.82	3.11	3.2	0.003	0.61	0.0	0.03	24.25	0.00	2.108	7.73	3.50	5.0	95.0	0.0	-0.08	0.93	0.70	0.86	2.76	14998	389	3	551	13	0	0	logfile
✔	8JNJ	36449	2024-12-30	2023-06-06	3.3	3.66	3.37	3.6	0.004	0.49	0.0	0.04	10.55	0.00	2.292	7.26	1.45	1.6	98.4	0.0	-0.38	0.63	0.84	3.60	3.6	0.002	0.55	0.0	0.04	13.95	0.00	2.631	7.30	1.77	1.8	98.2	0.0	1.42	0.95	0.58	0.83	2.52	11736	1516	2	0	0	0	0	logfile
✔	8T2V	40989	2024-12-30	2023-06-06	3.4	4.28	3.49	3.7	0.016	1.93	1.0	0.10	20.17	0.01	1.751	11.21	5.50	9.1	90.0	1.0	-1.99	0.91	0.84	2.12	3.7	0.003	0.72	0.0	0.05	16.67	0.00	2.008	7.03	1.97	6.2	93.6	0.2	-0.62	1.15	0.91	0.84	2.41	13134	1664	10	0	34	6	0	logfile
✔	8T2E	40981	2024-12-31	2023-06-05	3.5	3.64	3.46	3.6	0.023	1.67	0.0	0.14	11.27	0.01	2.373	0.73	0.14	1.8	98.1	0.1	0.66	0.63	0.82	3.24	3.6	0.003	0.63	0.0	0.04	14.15	0.00	2.434	5.89	1.99	2.4	97.6	0.0	0.30	1.92	0.58	0.81	2.53	15021	1632	20	0	295	0	0	logfile
✔	8JMT	36426	2024-12-27	2023-06-05	3.3	3.55	3.41	3.7	0.003	0.74	0.0	0.04	14.38	0.00	2.204	8.56	0.00	3.5	96.5	0.0	-0.01	0.35	0.59	1.38	3.7	0.004	0.60	0.0	0.04	16.68	0.00	2.634	9.60	2.46	3.5	96.5	0.0	1.69	1.17	0.33	0.61	0.53	1894	234	1	0	0	0	0	logfile
✔	8T25	40980	2024-12-29	2023-06-05	3.62	3.81	3.74	3.8	0.003	0.63	0.0	0.04	18.09	0.01	2.200	10.48	0.44	4.0	96.0	0.0	-0.27	0.62	0.60	0.80	3.8	0.003	0.67	0.0	0.04	18.35	0.00	2.567	8.88	4.94	5.9	94.1	0.0	-0.70	0.35	0.64	0.63	0.88	6408	787	2	0	0	0	0	logfile
✔	8T23	40979	2024-12-27	2023-06-05	3.87	4.12	4.24	7.5	0.005	1.00	0.0	0.05	19.22	0.01	2.136	16.85	0.59	11.9	88.1	0.0	-3.06	0.59	0.48	0.19	7.5	0.003	0.80	0.0	0.05	18.15	0.01	2.558	14.86	4.98	11.4	88.6	0.0	-2.36	0.88	0.62	0.54	0.19	6451	781	6	0	6	0	0	logfile

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