Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JLZ	36409	2024-12-28	2023-06-04	3.09	2.32	3.33	2.1	0.005	0.71	0.0	0.04	13.33	0.01	2.170	6.28	0.12	3.7	96.3	0.0	-0.56	0.78	0.77	2.77	2.1	0.004	0.62	0.0	0.04	15.22	0.00	2.525	4.90	1.48	3.3	96.7	0.0	0.72	0.35	0.79	0.80	2.43	7730	1015	6	0	1	0	0	logfile
✔	8JLW	36406	2024-12-27	2023-06-03	3.0	3.23	2.87	3.2	0.005	0.69	0.0	0.04	14.61	0.01	2.255	11.03	0.00	9.3	90.7	0.0	-1.71	0.58	0.71	4.14	3.2	0.004	0.71	0.0	0.04	16.81	0.01	2.544	8.87	1.29	7.0	93.0	0.0	-1.42	0.37	0.55	0.72	3.69	2157	280	3	0	0	0	0	logfile
✔	8JLX	36407	2024-12-27	2023-06-03	3.0	3.13	2.80	3.1	0.004	0.75	0.0	0.05	14.32	0.01	2.247	12.73	0.00	11.9	88.1	0.0	-2.27	0.54	0.71	2.31	3.1	0.004	0.76	0.0	0.05	17.69	0.00	2.471	7.95	5.88	9.8	90.2	0.0	-2.13	0.43	0.53	0.73	2.44	2277	293	3	0	0	0	0	logfile
✔	8JLP	36403	2024-12-28	2023-06-02	3.23	3.50	3.28	3.6	0.003	0.63	0.0	0.04	14.93	0.00	2.209	10.42	0.00	4.8	95.2	0.0	-0.31	0.60	0.71	2.06	3.6	0.004	0.99	1.0	0.04	16.71	0.00	2.469	8.16	2.14	5.0	95.0	0.0	0.34	0.38	0.57	0.74	1.53	7343	921	5	0	1	0	0	logfile
✔	8JLJ	36399	2024-12-28	2023-06-02	3.1	2.95	2.70	3.0	0.008	0.99	3.0	0.06	13.60	0.01	2.256	8.09	0.82	3.9	96.1	0.0	-0.40	0.65	0.81	3.07	3.0	0.004	0.67	0.0	0.04	15.90	0.00	2.525	3.56	1.55	4.3	95.7	0.0	0.73	0.56	0.72	0.88	3.60	8918	1132	6	0	1	0	0	logfile
✘	8JL4	36388	2024-12-29	2023-06-02	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9588	1066	8	0	86	0	0	logfile
✔	8JLo	36402	2024-12-28	2023-06-02	3.52	3.78	3.53	3.7	0.003	0.69	0.0	0.04	14.26	0.00	2.257	7.12	0.25	4.5	95.5	0.0	-0.64	0.59	0.79	2.09	3.7	0.003	0.61	0.0	0.04	16.40	0.00	2.343	6.09	1.26	4.1	95.9	0.0	0.28	0.41	0.63	0.81	1.60	7343	922	5	0	1	0	0	logfile
✔	8JLB	36391	2024-12-29	2023-06-02	2.36	2.12	2.25	2.5	0.004	0.69	0.0	0.04	29.91	0.01	1.988	3.26	0.16	1.5	98.5	0.0	0.69	0.76	0.85	3.59	1.7	0.004	0.59	0.0	0.04	28.20	0.00	2.207	3.64	1.79	1.1	98.9	0.0	2.96	1.10	0.77	0.85	3.23	11844	746	10	290	0	0	0	logfile
✔	8JLE	36394	2024-12-27	2023-06-02	2.82	2.99	2.87	3.0	0.010	1.21	0.0	0.10	12.34	0.01	2.204	13.50	0.00	5.3	94.5	0.2	-0.99	0.49	0.77	3.45	3.0	0.004	0.60	0.0	0.05	15.56	0.00	2.568	6.18	3.70	4.4	95.6	0.0	-0.22	1.06	0.63	0.86	3.92	4408	528	4	0	5	0	0	logfile
✔	8JLC	36392	2024-12-28	2023-06-02	2.88	3.12	2.97	3.2	0.011	1.18	0.0	0.09	13.04	0.01	2.195	10.44	0.00	3.7	96.3	0.0	-0.12	0.48	0.74	2.44	3.2	0.003	0.60	0.0	0.04	15.77	0.00	2.414	6.20	2.28	2.5	97.5	0.0	0.72	1.05	0.56	0.81	2.13	8189	1012	4	0	6	0	0	logfile
✔	8JL1	36386	2024-12-29	2023-06-02	2.8	3.06	2.79	3.1	0.007	0.61	0.0	0.04	15.09	0.00	2.226	4.15	0.00	2.4	97.6	0.0	1.13	0.68	0.89	4.20	3.1	0.005	0.52	0.0	0.04	15.19	0.00	2.468	4.25	1.20	1.8	98.2	0.0	2.40	0.25	0.63	0.87	3.94	9384	1054	8	0	80	0	0	logfile
✔	8JLi	36398	2024-12-28	2023-06-02	3.38	3.66	3.38	3.7	0.008	1.00	1.0	0.06	12.67	0.01	2.021	10.57	0.00	2.9	97.1	0.0	0.78	0.51	0.70	0.97	3.6	0.003	0.60	0.0	0.04	16.24	0.00	2.415	6.97	1.64	2.8	97.2	0.0	1.67	1.17	0.56	0.72	0.96	9248	1172	4	0	2	0	0	logfile
✔	8JL0	36385	2024-12-29	2023-06-02	3.1	2.70	3.09	3.1	0.008	0.73	0.0	0.05	20.61	0.01	2.233	8.69	0.79	8.3	91.3	0.4	-1.51	0.77	0.85	2.48	3.1	0.002	0.54	0.0	0.04	20.44	0.00	2.531	6.90	3.38	6.9	93.1	0.1	-0.51	0.28	0.75	0.85	2.51	9244	1042	5	44	1	0	0	logfile
✔	8JL3	36387	2024-12-29	2023-06-02	2.59	2.77	2.59	2.8	0.006	0.63	0.0	0.04	15.27	0.01	2.231	4.60	0.00	1.3	98.7	0.0	1.16	0.70	0.89	4.64	2.8	0.004	0.57	0.0	0.04	15.75	0.00	2.589	3.54	1.53	1.3	98.7	0.0	2.21	0.24	0.67	0.88	4.11	9408	1054	8	0	82	0	0	logfile
✔	8JLF	36395	2024-12-28	2023-06-02	3.01	3.25	3.07	3.3	0.011	1.11	0.0	0.08	13.11	0.01	2.246	8.30	0.00	3.3	96.7	0.0	-0.19	0.50	0.76	2.96	3.3	0.003	0.49	0.0	0.04	14.58	0.00	2.426	6.95	1.59	2.1	97.9	0.0	1.03	0.97	0.58	0.83	2.64	8177	1012	4	0	5	0	0	logfile
✔	8JLH	36397	2024-12-30	2023-06-02	2.9	3.15	3.12	3.2	0.004	0.63	0.0	0.04	15.50	0.00	2.162	9.38	1.39	3.3	96.7	0.0	0.04	0.52	0.78	2.93	3.2	0.003	0.60	0.0	0.04	15.86	0.00	2.399	7.19	3.00	2.9	97.1	0.0	0.36	0.32	0.60	0.83	2.85	12610	1542	8	0	11	0	0	logfile
✔	8JKV	36376	2024-12-28	2023-06-02	2.87	3.16	2.86	3.2	0.007	0.65	0.0	0.05	15.12	0.00	2.253	5.12	0.00	2.3	97.7	0.0	0.73	0.65	0.85	4.23	3.2	0.005	0.58	0.0	0.04	14.66	0.00	2.612	4.51	1.20	1.6	98.4	0.0	1.62	0.86	0.65	0.86	3.99	9266	1054	8	0	76	0	0	logfile
✔	8T1J	40969	2024-12-28	2023-06-02	2.7	2.99	2.81	3.0	0.012	1.45	0.0	0.07	12.84	0.01	2.502	0.95	0.00	2.4	97.6	0.0	0.15	0.76	0.80	4.27	3.0	0.003	0.60	0.0	0.04	16.61	0.00	2.504	5.10	1.20	2.0	98.0	0.0	1.23	0.67	0.72	0.83	4.02	6973	840	5	0	5	0	0	logfile
✔	8JL9	36389	2024-12-30	2023-06-02	2.65	2.16	2.47	2.0	0.005	0.86	1.0	0.05	28.86	0.01	1.865	2.36	0.00	1.9	98.1	0.0	0.24	0.60	0.65	2.76	1.8	0.004	0.59	0.0	0.04	28.22	0.00	2.467	3.58	1.77	1.4	98.6	0.0	2.95	1.16	0.80	0.85	3.52	12314	753	10	310	0	0	0	logfile
✔	8JLN	36401	2024-12-28	2023-06-02	3.24	3.56	3.30	3.6	0.002	0.64	0.0	0.04	14.36	0.00	2.216	9.18	0.00	5.0	95.0	0.0	-0.14	0.54	0.74	1.32	3.6	0.003	0.64	0.0	0.04	16.57	0.00	2.577	7.08	1.92	6.2	93.8	0.0	-0.26	1.54	0.57	0.79	1.52	9117	1152	6	0	1	0	0	logfile

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