Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JLQ	36404	2024-12-28	2023-06-02	2.84	3.01	2.88	3.1	0.005	0.78	1.0	0.05	13.14	0.00	2.203	18.53	0.41	4.0	96.0	0.0	-0.45	0.59	0.69	2.82	3.1	0.003	0.70	0.0	0.04	15.95	0.00	2.496	13.51	2.44	4.2	95.8	0.0	0.11	0.51	0.57	0.72	1.97	9033	1140	6	0	1	0	0	logfile
✔	8JKZ	36384	2024-12-28	2023-06-02	3.6	3.43	3.51	3.4	0.007	0.74	0.0	0.04	17.97	0.00	2.219	10.00	1.00	10.0	89.9	0.1	-1.21	0.72	0.84	2.29	3.4	0.003	0.60	0.0	0.04	17.89	0.00	2.514	7.80	3.32	9.0	90.8	0.2	-0.50	0.37	0.75	0.84	1.98	8444	1053	3	0	1	0	0	logfile
✔	8T1i	40968	2024-12-27	2023-06-02	4.68	7.67	5.02	4.6	0.008	0.63	0.0	0.04	11.37	0.00	1.958	12.22	0.00	12.2	87.7	0.1	-3.42	0.87	0.77	—	4.6	0.008	0.68	1.0	0.04	11.42	0.00	2.063	9.42	0.00	10.7	89.3	0.0	-0.87	0.48	0.89	0.80	—	49568	7857	27	0	20	0	0	logfile
✔	8JLG	36396	2024-12-27	2023-06-02	2.87	3.10	2.94	3.1	0.011	1.11	0.0	0.08	13.81	0.01	2.213	8.78	0.00	4.7	95.3	0.0	-1.01	0.54	0.83	4.44	3.1	0.003	0.55	0.0	0.05	15.79	0.00	2.451	5.58	3.07	3.6	96.4	0.0	-0.65	0.92	0.59	0.84	3.86	4426	531	4	0	5	0	0	logfile
✔	8JLK	36400	2024-12-28	2023-06-02	3.22	3.56	3.28	3.6	0.005	0.84	0.0	0.05	14.64	0.01	2.213	11.02	0.95	6.2	93.8	0.0	-0.94	0.61	0.67	0.98	3.5	0.003	0.67	0.0	0.04	16.58	0.00	2.460	6.14	2.21	4.2	95.8	0.0	0.04	1.08	0.67	0.79	1.85	8824	1129	6	0	1	0	0	logfile
✔	8JLA	36390	2024-12-30	2023-06-02	3.44	2.77	3.38	3.0	0.006	0.88	0.0	0.05	28.21	0.01	1.607	3.59	0.16	1.4	98.6	0.0	0.68	0.78	0.82	1.24	2.9	0.004	0.61	0.0	0.03	28.28	0.00	2.117	7.22	3.87	1.6	98.4	0.0	3.37	0.58	0.82	0.85	1.31	12314	748	10	312	0	0	0	logfile
✔	8JLD	36393	2024-12-29	2023-06-02	2.48	2.34	2.40	2.8	0.004	0.71	0.0	0.04	29.74	0.01	1.941	4.35	0.32	1.4	98.6	0.0	0.65	0.78	0.87	3.08	2.7	0.004	0.60	0.0	0.03	28.29	0.00	2.194	4.45	2.92	1.5	98.5	0.0	3.17	0.34	0.78	0.88	2.47	11844	746	10	290	0	0	0	logfile
✔	8T1K	40970	2024-12-28	2023-06-02	3.14	3.28	3.06	3.3	0.012	1.46	1.0	0.07	12.82	0.01	2.350	1.24	0.00	2.6	97.4	0.0	0.05	0.79	0.85	4.33	3.3	0.004	0.97	1.0	0.04	15.41	0.00	1.782	4.37	1.86	2.0	98.0	0.0	0.93	1.68	0.78	0.88	4.07	6973	840	5	0	5	0	0	logfile
✔	8JLR	36405	2024-12-28	2023-06-02	3.0	3.35	3.14	3.3	0.003	0.61	0.0	0.04	14.18	0.00	2.200	15.48	0.21	4.3	95.7	0.0	-0.20	0.64	0.75	2.21	3.3	0.004	0.68	0.0	0.04	16.28	0.00	2.499	11.80	1.85	4.5	95.5	0.0	-0.07	0.49	0.61	0.77	1.79	8934	1130	6	0	1	0	0	logfile
✔	8T1L	40971	2024-12-27	2023-06-02	4.83	5.18	4.88	4.8	0.003	0.80	0.0	0.04	12.13	0.00	2.161	9.56	0.00	11.4	88.5	0.1	-3.93	0.79	0.75	—	4.8	0.004	0.79	0.0	0.04	11.92	0.01	2.285	13.91	0.00	15.7	84.3	0.0	-1.73	1.33	0.80	0.79	—	49460	7823	26	0	20	0	0	logfile
✔	8T13	40953	2024-12-29	2023-06-01	3.45	3.82	3.47	3.7	0.002	0.53	0.0	0.04	18.19	0.00	2.200	7.19	0.10	4.8	95.2	0.0	0.32	0.65	0.67	1.71	3.7	0.002	0.55	0.0	0.04	18.91	0.00	2.436	5.73	1.60	5.1	94.9	0.0	0.31	0.42	0.75	0.79	1.80	9304	1167	3	0	2	0	0	logfile
✔	8T0M	40944	2024-12-27	2023-06-01	2.4	2.53	2.44	2.5	0.003	0.56	0.0	0.04	16.14	0.00	2.184	5.34	1.17	1.4	98.6	0.0	1.20	0.77	0.86	4.07	2.6	0.004	0.59	0.0	0.04	16.87	0.00	2.134	5.99	2.36	1.5	98.5	0.0	1.42	1.10	0.75	0.85	3.95	47538	6102	28	0	0	0	0	logfile
✘	8T0R	40946	2024-12-26	2023-06-01	3.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45214	2784	12	4	4	0	22670	logfile
✔	8T12	40952	2024-12-29	2023-06-01	3.34	3.81	3.37	3.7	0.004	0.69	0.0	0.04	17.59	0.00	2.147	9.16	0.60	5.6	94.0	0.4	0.31	0.70	0.73	1.49	3.7	0.003	0.63	0.0	0.04	18.14	0.00	2.488	5.49	3.06	5.5	94.4	0.2	0.37	1.67	0.80	0.84	1.68	10813	1343	3	0	2	0	0	logfile
✔	8JKD	36368	2024-12-29	2023-06-01	2.6	2.72	2.55	2.8	0.003	0.63	0.0	0.05	14.09	0.00	2.206	7.36	0.00	6.7	93.3	0.0	-0.71	0.73	0.83	3.91	2.8	0.003	0.68	0.0	0.05	16.95	0.00	2.509	5.88	1.83	6.2	93.8	0.0	-0.72	0.35	0.73	0.85	3.89	10960	1403	3	0	0	0	0	logfile
✘	8T0K	40942	2024-12-26	2023-06-01	3.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45218	2784	12	4	4	0	22674	logfile
✔	8T0Q	40945	2024-12-30	2023-06-01	3.06	2.84	3.09	3.3	0.008	1.06	1.0	0.28	18.27	0.01	1.734	38.90	3.74	3.9	95.8	0.3	1.56	0.86	0.86	3.43	3.3	0.005	1.26	2.0	0.10	17.26	0.01	2.071	11.13	3.27	3.3	96.6	0.1	1.31	1.55	0.85	0.86	3.07	12355	1547	8	0	6	0	0	logfile
✔	8P7W	17537	2024-12-31	2023-05-31	3.04	3.33	3.02	3.3	0.004	0.72	0.0	0.04	15.99	0.00	2.206	9.76	0.45	6.1	93.9	0.0	-1.44	0.65	0.86	2.29	3.4	0.004	0.67	1.0	0.04	16.52	0.00	2.274	8.19	3.18	6.0	94.0	0.0	-0.36	0.95	0.66	0.87	2.35	14380	1852	8	0	0	0	0	logfile
✔	8T06	40936	2024-12-27	2023-05-31	3.32	3.61	3.29	3.6	0.014	1.73	0.0	0.08	13.20	0.00	2.510	0.67	0.96	3.2	96.8	0.0	-0.80	0.50	0.74	3.51	3.5	0.003	0.63	0.0	0.04	15.19	0.00	2.511	6.42	1.23	2.6	97.4	0.0	2.01	0.68	0.64	0.85	1.97	6712	852	8	0	2	0	0	logfile
✔	8P8A	17543	2024-12-30	2023-05-31	3.2	3.30	3.14	3.3	0.006	1.01	0.0	0.06	17.65	0.01	2.213	4.01	10.55	7.2	92.7	0.1	-3.83	0.61	0.84	3.07	3.3	0.003	0.63	0.0	0.04	16.57	0.00	2.535	4.84	3.79	6.4	93.5	0.1	-0.21	1.57	0.61	0.87	2.82	13337	1709	9	0	4	0	0	logfile

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