Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JJ8	36342	2024-12-27	2023-05-29	3.2	3.51	3.45	3.5	0.005	0.90	0.0	0.05	15.21	0.00	2.107	14.28	1.86	6.7	93.3	0.0	0.54	0.51	0.75	2.04	3.5	0.006	1.33	1.0	0.06	16.90	0.00	2.209	10.18	1.86	4.3	95.4	0.3	1.56	1.18	0.44	0.74	1.79	3023	375	2	0	1	0	0	logfile
✔	8JJ5	36340	2024-12-30	2023-05-29	3.5	3.74	3.51	3.7	0.021	2.18	39.0	0.19	17.07	0.02	2.397	1.75	1.22	8.9	91.0	0.1	-2.93	0.38	0.61	1.08	3.7	0.004	0.72	0.0	0.04	16.13	0.00	2.171	13.96	1.49	5.4	94.6	0.0	-0.36	1.07	0.40	0.64	0.81	13594	866	10	0	14	0	6679	logfile
✔	8SZA	40905	2024-12-27	2023-05-29	2.75	3.32	2.81	3.4	0.003	0.65	0.0	0.03	15.14	0.00	2.185	8.19	0.98	0.3	99.7	0.0	2.12	0.50	0.78	1.28	3.4	0.003	0.66	0.0	0.04	15.62	0.00	2.586	9.89	1.18	0.8	99.2	0.0	3.24	0.47	0.49	0.78	1.71	4800	606	11	0	6	0	0	logfile
✔	8SZF	40914	2024-12-30	2023-05-29	2.8	2.08	—	1.7	0.005	0.70	1.0	0.05	13.19	0.01	2.268	4.64	0.00	3.1	96.9	0.0	0.03	0.79	0.83	3.52	1.7	0.002	0.52	0.0	0.04	15.00	0.00	2.311	2.93	0.96	2.8	97.2	0.0	0.70	0.34	0.79	0.83	2.60	12813	1602	9	0	20	0	0	logfile
✔	8SZB	40907	2024-12-27	2023-05-29	3.07	3.36	3.01	3.5	0.003	0.51	0.0	0.03	16.77	0.00	2.154	9.22	0.37	1.5	98.5	0.0	2.06	0.49	0.73	0.50	3.5	0.003	0.57	0.0	0.04	16.70	0.00	2.500	7.47	4.07	1.3	98.7	0.0	4.41	0.95	0.51	0.79	1.41	4962	612	12	0	6	0	0	logfile
✘	8JiW	36332	2024-12-31	2023-05-28	2.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	68755	4412	37	1571	87	0	0	logfile
✔	8SZ7	40902	2024-12-27	2023-05-27	2.84	3.08	2.87	3.6	0.003	0.46	0.0	0.04	9.67	0.00	2.393	1.99	0.00	0.9	99.1	0.0	1.11	0.17	0.20	2.22	3.2	0.003	0.62	0.0	0.04	12.99	0.00	2.516	3.73	1.36	1.3	98.7	0.0	2.29	1.13	0.44	0.67	0.78	4026	240	1	0	0	0	2021	logfile
✘	8SZ8	40903	2024-12-26	2023-05-27	3.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45268	2783	12	4	4	0	22728	logfile
✔	8Jio	36322	2024-12-28	2023-05-27	3.3	2.64	3.35	2.1	0.002	0.52	0.0	0.04	8.53	0.00	2.220	9.16	3.78	8.5	91.4	0.1	-4.63	0.67	0.63	1.37	2.1	0.004	0.81	0.0	0.05	13.32	0.00	2.350	14.06	3.88	10.6	89.2	0.2	-2.92	1.22	0.70	0.69	1.60	8698	1120	3	0	0	0	0	logfile
✔	8JiR	36325	2024-12-28	2023-05-27	2.57	3.54	2.61	3.3	0.010	1.02	3.0	0.06	15.93	0.01	1.972	12.47	6.61	7.0	92.5	0.5	-1.76	0.67	0.77	3.14	3.3	0.003	0.67	0.0	0.04	16.28	0.00	2.475	6.91	1.84	4.2	95.8	0.0	0.45	0.56	0.67	0.79	2.72	9014	1167	7	0	1	0	0	logfile
✔	8JiU	36328	2024-12-28	2023-05-27	2.76	3.73	2.83	3.5	0.008	1.14	4.0	0.08	18.35	0.01	2.217	11.25	15.73	6.4	92.3	1.3	-2.62	0.69	0.80	2.29	3.5	0.003	0.82	0.0	0.04	16.12	0.00	2.491	8.88	1.94	4.1	95.6	0.3	-0.10	0.78	0.67	0.80	1.97	9075	1177	8	0	2	0	0	logfile
✔	8JiT	36327	2024-12-29	2023-05-27	2.91	3.75	2.95	3.5	0.005	0.79	1.0	0.05	14.72	0.00	2.204	30.83	4.69	5.5	94.0	0.5	-0.47	0.69	0.80	2.15	3.5	0.005	0.79	0.0	0.04	15.87	0.00	2.483	8.18	3.13	3.9	95.9	0.2	0.55	0.61	0.70	0.83	2.08	9193	1176	7	0	1	0	0	logfile
✔	8JiQ	36324	2024-12-28	2023-05-27	3.4	3.86	3.37	3.7	0.003	0.64	0.0	0.04	15.17	0.00	2.202	10.10	2.47	4.1	95.5	0.4	-0.03	0.82	0.80	2.08	3.7	0.003	0.62	0.0	0.04	16.05	0.00	2.478	8.04	1.68	3.8	96.2	0.0	0.41	0.42	0.82	0.83	1.53	8707	1134	6	0	0	0	0	logfile
✔	8JiP	36323	2024-12-29	2023-05-27	2.85	3.83	2.89	3.6	0.006	1.05	1.0	0.07	18.75	0.00	2.156	16.09	14.94	6.6	92.6	0.8	-2.27	0.68	0.75	2.00	3.6	0.003	0.73	0.0	0.04	16.78	0.00	2.403	6.01	1.50	3.9	96.1	0.0	0.18	0.80	0.66	0.81	1.69	9362	1180	7	0	1	0	0	logfile
✔	8JiS	36326	2024-12-28	2023-05-27	2.46	3.46	2.49	3.2	0.009	1.20	0.0	0.08	19.44	0.01	2.266	8.79	14.75	6.9	92.2	0.9	-1.22	0.66	0.77	2.14	3.2	0.004	0.68	0.0	0.04	17.24	0.00	2.429	7.07	3.74	4.5	95.4	0.1	1.01	0.57	0.66	0.78	2.28	9158	1174	6	0	0	0	0	logfile
✔	8JiN	36321	2024-12-27	2023-05-27	2.45	2.34	2.98	2.1	0.002	0.54	0.0	0.04	10.47	0.00	2.214	8.19	5.49	7.2	92.7	0.1	-3.97	0.74	0.77	3.74	2.1	0.003	0.76	0.0	0.05	14.86	0.00	2.490	9.85	3.19	6.4	93.4	0.1	-1.82	0.62	0.78	0.80	3.46	5249	681	3	0	0	0	0	logfile
✔	8JiM	36318	2024-12-28	2023-05-26	2.98	2.35	—	3.2	0.007	0.91	0.0	0.05	13.51	0.00	2.232	10.37	0.41	5.8	94.2	0.1	-1.91	0.75	0.79	2.75	3.2	0.003	0.64	0.0	0.04	16.26	0.00	2.554	5.10	2.23	3.4	96.6	0.0	-0.38	1.00	0.75	0.82	2.42	9051	1144	6	0	2	1	0	logfile
✔	8SZ4	40901	2024-12-27	2023-05-26	2.86	3.08	2.87	3.2	0.003	0.57	0.0	0.04	9.74	0.00	2.230	2.07	0.00	2.0	98.0	0.0	-0.45	0.18	0.26	2.84	3.1	0.003	0.64	0.0	0.04	13.62	0.00	2.493	3.68	1.26	2.8	97.2	0.0	1.66	2.06	0.43	0.67	0.96	4346	259	1	0	0	0	2184	logfile
✔	8JiA	36304	2024-12-29	2023-05-26	3.9	3.78	3.74	3.3	0.005	1.06	0.0	0.06	12.52	0.01	2.306	6.26	0.33	7.1	92.6	0.2	-3.20	0.75	0.78	0.95	3.3	0.003	0.74	0.0	0.04	14.24	0.00	2.276	11.09	1.87	7.1	92.7	0.2	-0.85	0.53	0.75	0.80	0.95	9587	1327	7	0	2	0	0	logfile
✔	8JiF	36311	2024-12-30	2023-05-26	2.28	3.16	2.24	2.8	0.005	1.14	0.0	0.05	17.82	0.01	1.676	18.52	12.43	8.7	88.5	2.9	-2.44	0.74	0.73	4.13	2.8	0.003	0.64	0.0	0.04	16.41	0.00	2.486	4.46	2.42	7.6	91.9	0.5	-0.71	0.73	0.76	0.89	4.61	14630	1831	5	0	1	0	0	logfile

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