Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JiA	36304	2024-12-29	2023-05-26	3.9	3.78	3.74	3.3	0.005	1.06	0.0	0.06	12.52	0.01	2.306	6.26	0.33	7.1	92.6	0.2	-3.20	0.75	0.78	0.95	3.3	0.003	0.74	0.0	0.04	14.24	0.00	2.276	11.09	1.87	7.1	92.7	0.2	-0.85	0.53	0.75	0.80	0.95	9587	1327	7	0	2	0	0	logfile
✔	8SZ4	40901	2024-12-27	2023-05-26	2.86	3.08	2.87	3.2	0.003	0.57	0.0	0.04	9.74	0.00	2.230	2.07	0.00	2.0	98.0	0.0	-0.45	0.18	0.26	2.84	3.1	0.003	0.64	0.0	0.04	13.62	0.00	2.493	3.68	1.26	2.8	97.2	0.0	1.66	2.06	0.43	0.67	0.96	4346	259	1	0	0	0	2184	logfile
✔	8SYo	40886	2024-12-29	2023-05-25	2.94	2.44	—	2.1	0.004	0.62	0.0	0.04	13.19	0.00	2.182	9.38	0.00	2.7	97.3	0.0	0.88	0.77	0.76	2.68	2.0	0.005	0.78	0.0	0.05	17.10	0.00	2.472	11.26	2.30	3.2	96.8	0.0	1.14	1.29	0.78	0.78	2.79	10069	1259	3	0	0	0	0	logfile
✔	8Ji0	36303	2024-12-27	2023-05-25	3.0	3.17	2.87	3.1	0.009	1.20	8.0	0.09	16.50	0.01	1.905	10.06	6.46	8.9	90.4	0.6	-1.71	0.66	0.72	3.00	3.1	0.003	0.72	0.0	0.05	17.23	0.01	2.327	7.84	2.39	7.1	92.9	0.0	-0.82	0.60	0.66	0.73	2.97	3934	498	2	0	0	0	0	logfile
✔	8SYM	40884	2024-12-27	2023-05-25	3.2	2.36	3.28	1.9	0.004	0.54	0.0	0.04	13.67	0.00	2.253	8.35	0.00	1.8	98.2	0.0	1.78	0.77	0.78	2.57	1.9	0.005	0.61	0.0	0.04	16.60	0.00	2.456	8.68	1.40	2.0	98.0	0.0	1.67	0.41	0.78	0.79	2.40	4486	560	2	0	0	0	0	logfile
✔	8JHR	36285	2024-12-27	2023-05-25	3.52	3.75	3.52	3.7	0.007	0.74	0.0	0.05	17.69	0.00	2.208	10.96	0.29	2.6	97.4	0.0	1.78	0.61	0.82	1.53	3.7	0.004	0.71	0.0	0.04	17.38	0.00	2.448	8.86	4.62	2.8	97.2	0.0	2.08	0.33	0.61	0.82	0.84	3302	430	2	0	1	0	0	logfile
✔	8SYP	40889	2024-12-31	2023-05-25	2.6	3.28	2.65	3.1	0.006	0.98	0.0	0.05	27.37	0.01	2.273	4.40	0.59	3.1	96.9	0.0	-0.62	0.85	0.88	2.66	3.1	0.003	0.61	0.0	0.04	27.55	0.00	2.062	6.80	1.87	3.1	96.9	0.0	1.61	0.39	0.83	0.86	2.70	15472	1199	12	294	0	0	0	logfile
✔	8SYN	40885	2024-12-29	2023-05-25	2.94	2.38	2.98	2.0	0.004	0.62	0.0	0.04	13.19	0.00	2.182	9.38	0.00	2.7	97.3	0.0	0.88	0.71	0.70	2.87	2.0	0.005	0.74	0.0	0.05	16.33	0.00	2.468	9.98	1.42	2.2	97.8	0.0	1.35	1.16	0.74	0.75	2.78	10069	1259	3	0	0	0	0	logfile
✔	8JHU	36294	2024-12-27	2023-05-25	3.1	3.30	3.08	3.3	0.003	0.59	0.0	0.04	15.64	0.01	2.200	10.88	0.82	5.4	94.1	0.5	-0.27	0.69	0.84	2.83	3.3	0.003	0.56	0.0	0.04	16.01	0.00	2.507	7.91	1.23	6.2	93.8	0.0	0.03	0.35	0.70	0.86	3.08	6554	811	1	0	0	0	0	logfile
✔	8P62	17458	2024-12-28	2023-05-25	3.9	3.96	3.95	3.6	0.002	0.54	0.0	0.04	14.34	0.00	1.945	7.04	0.00	4.1	95.8	0.0	0.16	0.84	0.77	0.94	3.6	0.002	0.58	0.0	0.04	15.86	0.00	1.989	6.12	0.99	4.3	95.7	0.0	0.50	0.38	0.84	0.78	1.09	53042	6631	21	9	16	0	0	logfile
✔	8P63	17459	2024-12-28	2023-05-25	3.7	3.60	3.73	3.6	0.002	0.54	0.0	0.04	14.17	0.00	1.983	6.75	0.00	3.6	96.4	0.0	0.08	0.79	0.78	1.30	3.6	0.003	0.60	0.0	0.04	16.01	0.00	1.940	6.43	1.64	4.2	95.8	0.1	0.29	1.86	0.79	0.79	1.29	52960	6620	21	9	16	0	0	logfile
✘	8JHY	36300	2024-12-28	2023-05-25	2.87	2.15	—	2.8	0.007	0.96	0.0	0.05	13.90	0.01	2.078	10.20	0.00	5.7	94.3	0.0	-2.25	0.75	0.77	3.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9073	1144	6	0	2	0	0	logfile
✔	8P6A	17462	2024-12-27	2023-05-25	3.63	3.93	3.43	3.9	0.003	0.66	0.0	0.04	17.40	0.00	2.161	10.48	0.29	2.4	97.6	0.0	2.80	0.57	0.81	1.41	3.9	0.004	0.66	0.0	0.04	17.65	0.00	2.568	9.01	5.19	3.1	96.9	0.0	2.79	0.86	0.58	0.82	1.06	3337	432	1	0	0	0	0	logfile
✔	8SXT	40858	2024-12-27	2023-05-24	3.3	2.61	3.32	3.0	0.003	0.60	0.0	0.04	17.79	0.00	2.039	11.35	0.45	3.7	96.1	0.1	0.31	0.74	0.76	2.14	2.2	0.003	0.65	0.0	0.04	18.41	0.00	2.016	9.63	3.47	4.2	95.8	0.0	0.66	0.62	0.75	0.79	2.16	6382	726	5	18	2	0	0	logfile
✔	8P5T	17452	2024-12-28	2023-05-24	2.17	2.19	2.21	1.9	0.011	1.21	0.0	0.08	13.97	0.01	2.125	1.04	0.42	3.2	96.8	0.0	-2.13	0.91	0.92	5.21	1.9	0.005	0.64	0.0	0.05	16.51	0.00	1.948	1.85	0.89	2.5	97.5	0.0	1.12	0.39	0.89	0.89	4.39	52590	6714	12	0	18	0	0	logfile
✘	8P5U	17453	2024-12-28	2023-05-24	2.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52878	6714	12	0	24	0	0	logfile
✔	8SXU	40859	2024-12-27	2023-05-24	3.66	2.81	3.70	3.8	0.003	0.57	0.0	0.04	18.38	0.00	2.187	15.99	0.15	5.4	94.6	0.0	-0.09	0.64	0.66	0.42	2.0	0.003	0.74	0.0	0.04	18.18	0.00	2.409	14.15	3.92	4.7	95.3	0.0	-0.25	0.64	0.65	0.64	0.42	6207	726	2	10	0	0	0	logfile
✘	8SXZ	40861	2024-12-26	2023-05-24	3.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45263	2783	12	4	4	0	22723	logfile
✔	8P5E	17449	2024-12-28	2023-05-24	3.9	4.01	3.97	3.7	0.003	0.55	0.0	0.04	14.56	0.00	1.929	7.86	0.00	4.7	95.2	0.0	-0.06	0.86	0.79	1.15	3.6	0.005	0.67	0.0	0.04	16.28	0.00	1.907	8.36	1.36	5.6	94.3	0.0	0.00	0.46	0.86	0.80	1.06	53414	6633	22	26	16	0	0	logfile
✔	8JHF	36264	2024-12-31	2023-05-23	3.68	3.48	3.63	3.5	0.004	0.61	0.0	0.03	27.23	0.00	2.111	8.03	0.70	4.8	95.2	0.0	0.59	0.80	0.82	1.35	3.5	0.004	0.59	0.0	0.03	27.72	0.00	2.477	7.20	2.11	4.7	95.3	0.0	1.01	0.39	0.80	0.83	0.98	14703	1029	12	320	2	0	0	logfile

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