Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JGG	36233	2024-12-28	2023-05-20	3.0	3.29	3.17	3.2	0.006	0.94	0.0	0.05	14.77	0.00	2.288	9.81	1.05	5.8	94.2	0.0	-1.51	0.60	0.81	3.17	3.2	0.003	0.57	0.0	0.04	15.53	0.00	2.543	3.93	3.29	2.9	97.1	0.0	0.18	0.38	0.62	0.83	2.71	7889	1076	6	0	0	0	0	logfile
✔	8JFW	36218	2024-12-27	2023-05-19	3.64	3.84	3.69	3.9	0.003	0.60	0.0	0.04	15.17	0.00	2.029	6.16	0.15	2.7	97.3	0.0	1.30	0.69	0.81	1.84	3.9	0.003	0.54	0.0	0.04	16.07	0.00	2.006	4.16	1.21	2.8	97.2	0.0	1.20	0.30	0.69	0.81	1.86	6076	758	3	0	2	0	0	logfile
✔	8SWW	40823	2024-12-31	2023-05-19	3.4	3.55	3.37	3.5	0.021	1.69	0.0	0.12	10.73	0.01	2.231	0.95	0.00	2.7	97.3	0.0	0.60	0.60	0.80	3.83	3.5	0.003	0.65	0.0	0.04	14.42	0.00	2.414	6.65	2.78	3.3	96.7	0.0	-0.22	1.63	0.58	0.82	2.66	14799	1657	20	0	267	0	0	logfile
✔	8SWX	40824	2024-12-31	2023-05-19	3.9	4.01	3.79	4.0	0.022	1.69	0.0	0.14	11.07	0.01	2.272	1.27	0.41	2.4	97.5	0.1	0.79	0.59	0.80	2.83	4.0	0.003	0.70	0.0	0.05	14.95	0.00	2.526	6.54	4.26	3.9	96.0	0.1	-0.08	0.81	0.56	0.81	1.99	15170	1658	20	0	278	0	0	logfile
✔	8JFY	36219	2024-12-30	2023-05-19	2.79	3.07	2.94	3.1	0.003	0.61	0.0	0.04	15.45	0.00	2.127	7.01	0.39	1.9	97.8	0.3	1.14	0.61	0.78	2.26	3.1	0.003	0.88	1.0	0.05	16.78	0.00	2.084	5.61	1.55	3.2	96.7	0.1	0.75	0.43	0.68	0.84	2.41	11870	1472	8	0	18	0	0	logfile
✔	8SWV	40822	2024-12-31	2023-05-19	3.37	3.49	3.26	3.5	0.022	1.65	0.0	0.13	11.21	0.01	2.201	0.94	0.21	2.0	97.9	0.1	0.72	0.64	0.82	3.79	3.5	0.003	0.61	0.0	0.04	13.88	0.00	2.495	4.17	1.87	3.0	97.0	0.0	0.31	2.18	0.57	0.81	3.01	14870	1626	21	0	290	0	0	logfile
✔	8SX3	40825	2024-12-27	2023-05-19	4.0	4.24	4.01	4.2	0.010	1.45	0.0	0.07	14.59	0.01	2.144	2.53	0.00	1.8	98.2	0.0	0.92	0.77	0.76	—	4.1	0.004	0.79	0.0	0.04	15.66	0.00	2.496	14.75	3.49	3.1	96.9	0.0	0.47	1.56	0.78	0.80	—	4816	614	6	0	2	0	0	logfile
✔	8SWH	40814	2024-12-27	2023-05-18	3.88	4.03	3.87	3.9	0.021	1.93	0.0	0.12	12.95	0.01	2.378	1.51	0.27	3.2	96.8	0.0	-0.15	0.61	0.66	2.42	3.9	0.005	0.91	0.0	0.05	16.07	0.01	2.458	20.47	4.92	8.4	91.4	0.2	-1.93	2.56	0.63	0.69	1.88	3390	422	5	0	5	0	0	logfile
✔	8SWF	40811	2024-12-28	2023-05-18	3.39	3.71	3.54	3.6	0.012	1.17	1.0	0.07	10.73	0.00	2.263	1.39	0.00	3.7	95.6	0.7	-0.95	0.75	0.78	2.43	3.6	0.003	0.70	0.0	0.04	14.43	0.00	2.475	9.33	1.01	6.8	93.2	0.0	-0.54	1.61	0.74	0.81	2.30	53244	6676	8	0	0	0	0	logfile
✔	8JFT	36217	2024-12-29	2023-05-18	3.31	4.08	3.58	3.9	0.008	1.27	2.0	0.09	18.18	0.01	2.264	11.41	0.90	2.9	97.1	0.0	0.00	0.70	0.72	2.30	3.9	0.003	0.57	0.0	0.04	18.64	0.00	2.520	8.35	1.99	2.4	97.6	0.0	0.78	1.21	0.66	0.69	2.01	11176	1151	3	86	0	0	0	logfile
✔	8JFL	36213	2024-12-31	2023-05-18	2.9	2.17	3.05	1.9	0.014	1.87	213.0	0.13	16.11	0.01	1.101	28.45	3.87	3.9	96.1	0.0	-0.63	0.68	0.66	1.90	1.9	0.004	0.72	0.0	0.04	17.80	0.01	2.409	12.71	2.99	3.3	96.7	0.0	0.44	1.28	0.75	0.79	2.48	65884	8204	20	0	12	0	0	logfile
✔	8SW7	40810	2024-12-31	2023-05-17	3.37	3.85	3.96	3.9	0.022	1.72	0.0	0.13	11.37	0.01	2.188	1.14	0.14	2.2	97.8	0.1	0.77	0.58	0.77	2.95	3.8	0.007	1.02	1.0	0.05	14.81	0.01	2.171	11.56	4.54	4.6	95.4	0.0	-0.52	1.31	0.52	0.79	2.26	15133	1664	17	0	289	0	0	logfile
✔	8P34	17383	2024-12-27	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.005	0.64	0.0	0.05	13.81	0.00	2.682	0.69	1.23	4.3	95.7	0.0	-1.79	0.21	0.28	0.88	6.57	711	94	1	0	0	0	0	logfile
✔	8P36	17384	2024-12-27	2023-05-17	2.51	3.15	2.51	3.0	0.005	0.63	0.0	0.04	18.62	0.00	2.195	6.55	5.51	2.5	97.5	0.0	1.15	0.34	0.90	2.74	3.0	0.002	0.51	0.0	0.04	18.14	0.00	2.636	5.73	2.36	4.4	95.6	0.0	1.44	0.51	0.30	0.87	2.95	1223	161	2	0	2	0	0	logfile
✔	8JEX	36202	2024-12-27	2023-05-16	3.1	3.05	2.75	3.3	0.012	1.13	0.0	0.06	12.57	0.00	2.505	7.63	0.00	3.8	96.2	0.0	-4.98	0.45	0.83	2.64	3.2	0.004	0.56	0.0	0.05	14.06	0.00	2.607	1.37	2.14	3.5	96.5	0.0	-3.09	0.94	0.47	0.87	3.07	2616	330	18	0	60	0	0	logfile
✔	8SVF	40789	2024-12-31	2023-05-16	3.2	4.13	3.32	3.5	0.003	0.53	0.0	0.03	24.96	0.00	2.220	6.36	1.28	1.6	98.4	0.0	2.82	0.85	0.83	1.74	3.5	0.003	0.58	0.0	0.03	26.24	0.00	2.412	6.93	2.14	2.5	97.5	0.0	2.71	0.64	0.86	0.85	1.33	15254	1189	13	295	0	0	0	logfile
✔	8P2S	17373	2024-12-29	2023-05-16	2.4	2.06	2.43	1.8	0.003	0.54	0.0	0.04	12.82	0.00	2.120	8.76	3.01	4.7	95.2	0.1	0.29	0.79	0.75	4.06	1.8	0.004	0.68	0.0	0.05	16.47	0.00	1.996	10.22	1.65	6.0	93.9	0.1	0.26	0.54	0.80	0.79	3.74	9694	1201	4	0	6	0	0	logfile
✔	8JEK	36191	2024-12-28	2023-05-16	2.7	2.98	2.75	3.0	0.031	1.34	0.0	0.49	17.13	0.01	2.178	7.68	1.69	5.0	95.0	0.0	0.19	0.66	0.87	4.50	3.0	0.004	1.09	0.0	0.06	16.81	0.01	1.798	6.26	2.26	5.1	94.8	0.1	0.45	0.21	0.71	0.88	4.17	8623	1089	5	0	6	0	0	logfile
✔	8JEJ	36190	2024-12-28	2023-05-16	2.5	2.72	2.51	2.8	0.030	1.34	0.0	0.49	18.65	0.01	2.165	7.23	2.60	4.3	95.7	0.0	0.11	0.69	0.88	5.00	2.8	0.004	1.10	0.0	0.06	17.79	0.01	1.802	6.46	2.14	4.2	95.7	0.1	0.71	0.25	0.69	0.88	4.91	8604	1089	5	0	6	0	0	logfile
✔	8P2M	17370	2024-12-27	2023-05-16	3.82	5.95	4.51	4.2	0.012	1.85	111.0	0.14	13.83	0.01	2.190	2.42	1.90	4.5	95.5	0.0	-1.71	0.87	0.76	-0.22	4.2	0.003	0.78	0.0	0.04	15.17	0.00	2.127	12.48	0.87	2.6	97.4	0.0	1.63	1.18	0.87	0.75	0.07	46702	5819	9	0	0	0	0	logfile

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