Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JF0	36205	2024-12-27	2023-05-16	3.5	3.90	3.44	3.7	0.015	1.80	0.0	0.08	12.10	0.01	2.235	9.31	0.28	6.8	93.2	0.0	-2.70	0.74	0.78	2.30	3.7	0.004	0.90	0.0	0.05	15.65	0.00	2.423	13.52	2.96	2.3	97.7	0.0	1.23	1.49	0.72	0.75	1.66	6578	872	2	0	0	0	0	logfile
✔	8P2Z	17380	2024-12-27	2023-05-16	3.5	3.69	3.44	3.7	0.004	0.62	0.0	0.04	14.81	0.01	2.219	7.40	0.42	2.7	97.3	0.0	1.32	0.54	0.79	2.49	3.7	0.004	0.55	0.0	0.04	15.37	0.00	2.627	6.42	3.99	2.7	97.3	0.0	2.35	0.41	0.53	0.79	1.99	4641	603	4	0	3	0	0	logfile
✔	8JEZ	36204	2024-12-28	2023-05-16	2.6	2.34	2.58	2.6	0.016	1.79	0.0	0.10	17.04	0.02	2.325	6.13	0.48	2.2	97.8	0.0	-0.01	0.64	0.80	3.85	2.6	0.003	0.64	0.0	0.04	16.40	0.00	2.453	8.08	2.26	1.6	98.4	0.0	2.46	2.04	0.70	0.82	3.21	8282	1026	6	0	16	0	0	logfile
✔	8JEK	36191	2024-12-28	2023-05-16	2.7	2.98	2.75	3.0	0.031	1.34	0.0	0.49	17.13	0.01	2.178	7.68	1.69	5.0	95.0	0.0	0.19	0.66	0.87	4.50	3.0	0.004	1.09	0.0	0.06	16.81	0.01	1.798	6.26	2.26	5.1	94.8	0.1	0.45	0.21	0.71	0.88	4.17	8623	1089	5	0	6	0	0	logfile
✔	8P2E	17362	2024-12-30	2023-05-16	3.2	4.02	3.24	3.7	0.018	1.79	0.0	0.09	10.29	0.01	1.972	5.06	0.14	1.9	97.7	0.4	1.22	0.82	0.72	1.85	3.7	0.004	0.81	0.0	0.04	14.81	0.01	2.514	13.45	2.85	3.8	96.2	0.0	0.12	2.00	0.83	0.75	2.21	12786	1691	8	0	0	0	0	logfile
✔	8JEW	36201	2024-12-28	2023-05-16	2.49	2.22	2.40	2.4	0.015	1.79	0.0	0.08	15.57	0.01	1.932	6.25	0.48	3.0	97.0	0.0	-0.48	0.62	0.79	4.58	2.4	0.003	0.66	0.0	0.04	16.03	0.01	2.213	6.49	2.02	1.7	98.3	0.0	2.25	1.07	0.73	0.84	3.41	8284	1024	4	0	20	6	0	logfile
✘	8JF1	36206	2024-12-31	2023-05-16	2.85	2.80	2.83	3.0	0.015	1.88	0.0	0.08	14.78	0.01	0.001	6.41	0.71	2.6	97.4	0.0	-1.90	0.66	0.83	4.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16884	2052	8	0	32	8	0	logfile
✔	8JE2	36183	2024-12-30	2023-05-15	3.63	4.61	3.88	3.9	0.004	0.71	1.0	0.05	12.66	0.00	2.215	13.17	0.39	2.8	97.2	0.1	1.29	0.82	0.79	1.08	3.9	0.003	0.67	0.0	0.04	14.34	0.00	2.043	11.93	0.68	3.7	96.2	0.1	1.63	0.96	0.82	0.82	1.27	9271	1147	6	0	1	0	0	logfile
✔	8SV1	40781	2024-12-27	2023-05-15	3.5	3.48	2.74	3.8	0.003	0.75	0.0	0.05	16.02	0.01	2.219	10.35	0.70	6.2	93.4	0.4	-1.32	0.52	0.70	1.98	3.8	0.003	0.75	0.0	0.05	17.68	0.00	2.431	12.74	3.76	4.8	95.2	0.0	-1.45	0.69	0.47	0.69	1.83	6330	792	6	0	0	0	0	logfile
✔	8SV8	40782	2024-12-29	2023-05-15	3.38	3.59	—	3.5	0.004	0.72	0.0	0.04	16.38	0.01	2.199	10.96	0.54	5.5	94.4	0.1	-0.43	0.82	0.85	1.72	3.5	0.003	0.61	0.0	0.04	17.02	0.00	2.384	8.06	2.45	4.5	95.4	0.1	0.36	0.95	0.83	0.87	1.66	10208	1299	5	0	1	0	0	logfile
✔	8P2D	17361	2024-12-28	2023-05-15	2.59	2.21	2.59	2.0	0.002	0.51	0.0	0.04	12.79	0.00	1.968	10.26	4.79	8.1	91.9	0.0	-1.58	0.71	0.64	2.46	1.9	0.004	0.71	0.0	0.05	16.14	0.00	1.945	11.99	2.45	8.5	91.5	0.0	-1.50	1.31	0.73	0.68	1.73	8793	1087	4	0	4	0	0	logfile
✔	8P27	17358	2024-12-28	2023-05-15	2.73	2.25	2.73	2.1	0.004	0.55	0.0	0.04	12.49	0.00	1.936	6.22	5.43	8.3	91.7	0.0	-2.06	0.79	0.77	3.73	2.1	0.004	0.68	0.0	0.05	16.57	0.00	1.883	7.02	4.47	7.8	92.2	0.0	-1.30	0.50	0.81	0.79	3.04	8810	1089	4	0	4	0	0	logfile
✔	8JEF	36186	2024-12-28	2023-05-15	2.96	3.46	3.06	3.3	0.007	1.63	23.0	0.09	13.88	0.01	1.435	10.40	1.89	5.6	94.0	0.5	-0.30	0.66	0.84	3.06	3.3	0.003	0.63	0.0	0.04	15.85	0.00	2.567	4.37	2.00	6.1	93.9	0.0	-0.01	0.48	0.68	0.87	2.86	8615	1125	6	0	1	0	0	logfile
✔	8P23	17357	2024-12-29	2023-05-14	3.17	2.45	3.19	2.2	0.004	0.69	2.0	0.05	13.20	0.01	2.090	5.91	4.71	5.8	93.7	0.5	-0.94	0.75	0.75	3.06	2.2	0.003	0.67	0.0	0.04	15.45	0.00	2.125	5.42	4.21	6.4	93.2	0.4	-0.48	0.56	0.78	0.79	2.60	11399	1401	4	0	6	0	0	logfile
✔	8JDA	36076	2024-12-27	2023-05-13	3.67	3.84	3.41	3.8	0.004	0.78	0.0	0.04	14.02	0.00	2.176	14.34	0.14	5.7	94.2	0.1	-1.44	0.58	0.70	0.59	3.8	0.003	0.71	0.0	0.04	15.93	0.00	2.377	13.36	1.86	4.6	95.4	0.0	-0.05	0.45	0.56	0.70	0.59	6526	848	2	0	0	0	0	logfile
✔	8SUW	40778	2024-12-29	2023-05-13	3.15	3.47	3.37	3.5	0.002	0.50	0.0	0.04	15.08	0.00	2.072	3.17	0.00	4.2	95.8	0.0	-0.75	0.72	0.78	2.66	3.5	0.002	0.52	0.0	0.04	16.48	0.00	2.089	2.95	0.98	4.0	96.0	0.0	-0.23	1.19	0.74	0.83	2.16	56577	7035	31	0	18	0	0	logfile
✔	8JD9	36077	2024-12-31	2023-05-13	2.87	3.05	2.89	3.1	0.002	0.56	0.0	0.04	13.88	0.01	2.162	9.02	0.06	5.2	94.4	0.3	1.03	0.64	0.78	1.95	3.1	0.003	0.62	0.0	0.04	16.60	0.01	2.217	10.39	1.48	4.4	95.2	0.3	1.33	1.58	0.64	0.80	1.31	14725	1870	3	0	2	0	0	logfile
✔	8P1U	17356	2024-12-28	2023-05-12	3.3	3.59	3.29	3.7	0.003	0.56	0.0	0.04	15.31	0.00	2.269	10.25	0.21	4.1	95.9	0.0	0.73	0.63	0.74	1.66	3.6	0.003	0.56	0.0	0.04	16.09	0.00	2.411	8.31	2.63	3.7	96.3	0.0	0.93	0.40	0.60	0.75	1.88	9149	1179	5	0	0	0	0	logfile
✔	8P1K	17352	2024-12-30	2023-05-12	3.24	3.51	3.35	3.5	0.003	0.53	0.0	0.04	12.48	0.00	2.156	6.55	0.00	3.0	97.0	0.0	1.65	0.54	0.70	2.48	3.5	0.002	0.52	0.0	0.04	14.28	0.00	2.609	5.78	0.59	2.6	97.3	0.1	1.84	1.92	0.65	0.82	2.31	12261	1518	1	0	0	0	0	logfile
✔	8P1i	17350	2024-12-27	2023-05-12	2.97	3.40	3.11	3.3	0.005	0.55	0.0	0.04	13.76	0.00	1.885	4.52	0.00	3.3	96.7	0.0	1.24	0.55	0.82	4.03	3.3	0.004	0.54	0.0	0.04	15.48	0.00	2.319	3.10	0.52	2.4	97.6	0.0	1.39	0.30	0.55	0.84	3.77	47270	3076	6	0	4	0	23762	logfile

• ← previous
• Page 120 of 436
• next →