Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JD1	36172	2024-12-29	2023-05-12	3.7	3.87	3.63	3.8	0.002	0.50	0.0	0.04	12.60	0.00	2.228	6.47	0.21	6.8	93.2	0.0	-0.72	0.66	0.71	1.21	3.8	0.004	0.67	0.0	0.04	14.58	0.00	2.535	9.75	2.55	7.2	92.7	0.1	-0.69	0.57	0.65	0.69	1.42	10766	1508	5	0	7	0	0	logfile
✔	8JCY	36169	2024-12-29	2023-05-12	2.9	3.07	2.88	3.1	0.003	0.53	0.0	0.17	12.99	0.00	2.200	6.04	0.00	4.2	95.8	0.0	0.76	0.64	0.71	2.52	3.1	0.003	0.57	0.0	0.04	13.24	0.00	2.187	4.78	2.18	4.5	95.5	0.0	0.62	0.37	0.68	0.78	2.31	10874	1525	4	0	11	0	0	logfile
✔	8JCW	36167	2024-12-29	2023-05-12	3.0	3.17	2.95	3.1	0.003	0.61	0.0	0.17	13.68	0.00	2.218	5.90	0.22	5.5	94.5	0.0	0.47	0.69	0.77	1.98	3.1	0.005	0.68	0.0	0.04	14.26	0.01	2.513	6.80	3.70	7.1	92.9	0.0	0.17	1.15	0.72	0.85	2.72	10760	1527	4	0	6	0	0	logfile
✔	8JCZ	36170	2024-12-29	2023-05-12	3.0	3.18	2.98	3.2	0.003	0.57	0.0	0.18	14.97	0.00	2.247	9.10	0.22	4.4	95.6	0.0	0.07	0.65	0.75	2.15	3.2	0.004	0.60	0.0	0.04	14.02	0.00	2.538	6.83	1.62	6.3	93.7	0.0	-0.06	0.37	0.67	0.81	2.23	10540	1504	4	0	4	0	0	logfile
✔	8JD0	36171	2024-12-29	2023-05-12	3.3	3.56	3.24	3.5	0.004	0.49	0.0	0.04	13.56	0.00	2.278	5.98	0.10	4.3	95.7	0.0	0.18	0.66	0.69	1.55	3.5	0.003	0.57	0.0	0.04	14.06	0.00	2.449	7.42	2.59	5.4	94.6	0.0	-0.24	0.37	0.71	0.78	2.06	11264	1532	5	0	12	0	0	logfile
✔	8JD3	36174	2024-12-31	2023-05-12	3.3	3.50	3.27	3.5	0.004	0.53	0.0	0.10	13.40	0.00	2.210	6.60	0.13	4.0	96.0	0.0	-0.23	0.62	0.64	1.75	3.5	0.006	0.72	0.0	0.04	15.10	0.00	2.469	8.37	3.33	6.6	93.4	0.0	-0.68	0.55	0.66	0.70	1.94	15770	2148	8	0	5	0	0	logfile
✔	8JCU	36165	2024-12-29	2023-05-12	2.8	3.00	2.76	3.2	0.003	0.54	0.0	0.18	14.09	0.00	2.268	5.39	0.00	4.1	95.9	0.0	0.18	0.63	0.74	2.60	3.1	0.003	0.59	0.0	0.04	14.29	0.00	2.473	4.90	1.79	4.4	95.6	0.0	0.20	0.42	0.66	0.80	2.51	10830	1527	4	0	4	0	0	logfile
✔	8JCV	36166	2024-12-29	2023-05-12	3.4	3.66	3.32	3.6	0.003	0.56	0.0	0.19	14.87	0.00	2.300	7.05	0.11	4.5	95.5	0.0	1.15	0.67	0.72	1.48	3.6	0.004	0.61	0.0	0.04	14.69	0.00	2.502	7.30	1.61	5.2	94.8	0.0	0.81	0.50	0.69	0.79	1.64	10667	1514	4	0	4	0	0	logfile
✔	8JCH	36162	2024-12-26	2023-05-11	2.7	3.42	2.84	3.2	0.002	0.54	0.0	0.04	18.22	0.00	2.031	8.60	2.29	4.3	95.7	0.0	0.88	0.81	0.82	1.90	3.1	0.003	0.64	0.0	0.04	18.24	0.00	1.970	7.28	2.33	5.0	95.0	0.0	0.44	0.48	0.79	0.82	2.13	42732	5119	26	99	11	0	0	logfile
✔	8JCE	36159	2024-12-26	2023-05-11	2.41	2.93	2.39	2.7	0.005	0.75	0.0	0.05	20.04	0.00	2.023	2.67	0.59	1.9	98.1	0.0	-0.35	0.83	0.91	4.82	2.7	0.003	0.57	0.0	0.04	18.23	0.00	1.988	1.70	0.44	2.9	97.1	0.0	1.07	0.88	0.84	0.91	4.03	44304	5448	36	0	36	588	0	logfile
✔	8SUB	40763	2024-12-30	2023-05-11	2.89	3.11	3.05	3.1	0.005	0.70	0.0	0.05	15.08	0.00	1.948	2.94	0.00	5.8	94.2	0.0	-1.48	0.71	0.84	3.31	3.2	0.003	0.61	0.0	0.04	17.14	0.00	2.002	2.87	1.23	4.8	95.2	0.0	-0.42	1.29	0.70	0.84	2.59	61226	7611	34	0	22	0	0	logfile
✔	8JCD	36158	2024-12-29	2023-05-11	3.14	4.04	3.34	3.7	0.003	0.57	0.0	0.04	28.68	0.00	2.208	9.70	0.69	2.6	97.2	0.1	1.81	0.86	0.85	1.25	3.7	0.004	0.64	0.0	0.04	28.81	0.00	2.392	9.64	2.74	3.6	96.2	0.1	2.68	0.49	0.86	0.84	0.60	10506	704	10	240	0	0	0	logfile
✔	8SU9	40762	2024-12-30	2023-05-11	2.83	3.05	2.96	3.1	0.003	0.56	1.0	0.04	14.79	0.00	2.013	2.16	0.00	4.0	96.0	0.0	-0.97	0.70	0.81	3.05	3.1	0.003	0.58	0.0	0.04	17.02	0.00	1.987	1.97	1.40	4.3	95.7	0.0	-0.43	1.63	0.69	0.83	2.61	65385	8134	35	0	22	0	0	logfile
✔	8P12	17343	2024-12-29	2023-05-11	3.21	3.94	3.16	3.4	0.008	1.11	0.0	0.05	15.14	0.01	2.114	17.30	0.09	3.9	96.1	0.0	-0.37	0.75	0.68	0.72	3.4	0.004	0.75	0.0	0.05	15.81	0.00	2.547	16.27	2.29	5.5	94.5	0.0	-0.27	1.36	0.76	0.69	1.00	10266	1316	6	0	0	0	0	logfile
✔	8P0T	17337	2024-12-27	2023-05-10	2.65	2.76	2.65	2.7	0.004	0.63	0.0	0.05	13.92	0.00	1.840	11.98	1.21	2.1	97.9	0.0	0.11	0.67	0.86	4.52	2.7	0.006	0.71	0.0	0.05	17.17	0.01	2.410	18.29	2.40	2.1	97.9	0.0	0.16	0.86	0.69	0.88	4.17	47778	6130	32	0	4	0	0	logfile
✔	8JC0	36149	2024-12-27	2023-05-10	3.4	3.92	3.63	3.9	0.003	0.65	0.0	0.04	15.87	0.00	2.236	7.32	0.00	5.3	94.7	0.0	-1.74	0.35	0.55	1.77	3.9	0.002	0.54	0.0	0.04	16.43	0.00	2.544	3.92	2.87	4.9	95.1	0.0	-0.51	0.33	0.56	0.75	1.41	4691	589	9	0	1	0	0	logfile
✔	8JCC	36157	2024-12-29	2023-05-10	3.42	4.56	3.52	3.8	0.005	0.60	0.0	0.04	28.83	0.00	2.246	11.14	0.34	2.9	97.1	0.0	1.53	0.85	0.77	1.27	3.8	0.004	0.77	0.0	0.04	28.54	0.01	2.146	14.69	4.10	3.3	96.7	0.0	0.78	1.28	0.89	0.86	0.77	10358	707	10	232	0	0	0	logfile
✔	8P0A	17331	2024-12-27	2023-05-10	3.67	3.86	3.69	3.9	0.003	0.65	0.0	0.05	16.31	0.00	2.036	19.63	0.00	5.7	94.3	0.0	-1.96	0.67	0.69	1.79	3.9	0.003	0.77	0.0	0.05	17.83	0.00	2.035	17.64	2.91	6.4	93.6	0.0	-1.75	0.48	0.66	0.68	1.57	5764	718	5	0	4	0	0	logfile
✔	8P0U	17338	2024-12-29	2023-05-10	2.92	3.55	3.03	2.9	0.002	0.46	0.0	0.04	17.81	0.00	1.895	5.14	3.00	2.5	97.5	0.1	0.72	0.92	0.87	3.28	3.0	0.003	0.58	0.0	0.04	17.74	0.00	2.029	6.80	1.37	2.2	97.8	0.0	1.18	1.00	0.93	0.91	3.17	10912	1310	6	18	1	0	0	logfile
✔	8P0G	17333	2024-12-29	2023-05-10	3.17	3.78	3.18	3.2	0.002	0.42	0.0	0.04	16.06	0.00	1.965	5.02	0.17	3.7	96.2	0.1	0.93	0.91	0.84	2.75	3.3	0.003	0.56	0.0	0.04	17.04	0.00	2.016	6.84	1.90	3.9	96.1	0.0	0.87	0.62	0.93	0.90	2.67	11331	1356	6	19	1	0	0	logfile

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