Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JBG	36145	2024-12-28	2023-05-08	2.8	2.88	2.76	2.9	0.002	0.54	0.0	0.04	17.54	0.00	2.106	9.23	4.36	3.9	96.1	0.0	-0.10	0.67	0.82	2.97	2.9	0.003	0.60	0.0	0.04	17.61	0.00	2.470	7.08	2.94	4.4	95.6	0.0	0.81	0.30	0.65	0.83	2.90	8750	1139	6	0	0	0	0	logfile
✔	8JAS	36133	2024-12-26	2023-05-07	3.54	3.87	3.64	3.8	0.002	0.54	0.0	0.04	14.77	0.00	2.033	8.47	0.02	3.3	96.7	0.0	-1.27	0.75	0.76	1.64	3.8	0.003	0.65	0.0	0.04	17.05	0.00	2.154	12.97	1.75	3.5	96.5	0.0	0.17	0.66	0.76	0.81	1.11	39287	4842	25	0	8	0	0	logfile
✔	8JAV	36135	2024-12-26	2023-05-07	3.44	3.78	3.50	3.7	0.004	0.53	0.0	0.04	14.99	0.00	2.067	7.56	0.00	4.1	95.9	0.0	-1.39	0.76	0.78	1.97	3.7	0.004	0.64	0.0	0.04	17.04	0.00	2.203	11.37	1.82	4.1	95.9	0.0	0.22	0.98	0.79	0.83	1.44	39339	4846	26	0	8	0	0	logfile
✔	8JAJ	36127	2024-12-27	2023-05-06	3.9	4.09	3.79	3.8	0.002	0.51	0.0	0.04	12.66	0.00	2.064	6.03	0.00	3.2	96.6	0.2	0.70	0.52	0.74	0.61	3.8	0.004	0.64	0.0	0.04	15.01	0.00	2.546	6.31	1.51	4.8	94.7	0.5	-0.14	1.70	0.56	0.86	1.45	47664	6312	12	0	0	0	0	logfile
✔	8SRS	40740	2024-12-30	2023-05-06	2.79	3.33	2.87	3.1	0.004	0.83	0.0	0.05	19.79	0.01	2.029	3.26	0.58	3.0	97.0	0.0	-1.01	0.82	0.89	3.34	3.1	0.004	0.52	0.0	0.04	19.70	0.00	1.883	4.49	0.99	2.7	97.3	0.0	0.70	0.96	0.84	0.90	3.62	14148	1341	7	149	4	1	0	logfile
✔	8JAG	36113	2024-12-29	2023-05-06	3.55	3.73	3.59	3.7	0.020	1.81	2.0	0.11	12.74	0.01	1.641	1.92	0.00	3.4	96.5	0.1	0.24	0.55	0.73	2.75	3.7	0.004	0.72	0.0	0.05	14.80	0.00	2.329	9.03	2.98	4.9	94.7	0.3	-0.39	0.87	0.54	0.74	2.40	9772	1244	4	0	5	0	0	logfile
✔	8SRE	40728	2024-12-26	2023-05-05	2.52	2.18	—	2.5	0.013	1.78	24.0	0.09	13.34	0.01	1.852	2.27	0.47	2.5	97.5	0.0	0.65	0.57	0.74	3.16	2.5	0.003	0.56	0.0	0.04	15.46	0.00	1.936	5.67	1.37	2.6	97.4	0.0	1.48	0.60	0.71	0.85	3.35	42781	5508	12	0	41	12	0	logfile
✔	8J9V	36116	2024-12-30	2023-05-05	2.71	3.58	2.71	3.1	0.003	0.59	0.0	0.04	15.16	0.00	2.053	8.83	0.00	4.1	95.9	0.0	0.57	0.90	0.87	3.12	3.1	0.005	0.62	0.0	0.04	16.23	0.00	2.003	8.17	0.88	4.4	95.6	0.0	0.82	0.89	0.90	0.88	3.05	13918	1556	10	60	4	0	0	logfile
✔	8J9X	36118	2024-12-30	2023-05-05	3.0	4.16	3.04	3.3	0.003	0.59	0.0	0.04	17.55	0.00	2.224	10.24	0.29	4.8	95.2	0.0	0.43	0.92	0.84	1.64	3.4	0.004	0.69	0.0	0.04	18.90	0.00	2.041	10.90	0.73	5.5	94.5	0.0	0.41	0.57	0.93	0.89	2.02	13890	1556	10	60	4	0	0	logfile
✔	8SRM	40735	2024-12-27	2023-05-05	4.46	5.07	4.47	4.4	0.003	0.51	0.0	0.03	4.38	0.00	2.233	4.32	0.00	4.0	96.0	0.0	2.57	0.82	0.84	—	4.3	0.006	0.60	0.0	0.04	5.02	0.00	2.434	1.56	0.00	6.0	94.0	0.0	0.75	1.59	0.83	0.86	—	5773	1163	6	0	0	0	0	logfile
✔	8SRD	40727	2024-12-26	2023-05-05	2.91	2.21	—	2.9	0.011	1.76	40.0	0.10	14.22	0.01	2.024	5.71	0.94	5.2	94.8	0.0	-0.34	0.60	0.73	2.61	2.7	0.004	0.65	0.0	0.04	16.19	0.00	1.893	6.39	2.00	4.3	95.6	0.1	1.15	0.68	0.74	0.84	3.31	42686	5472	12	0	41	9	0	logfile
✔	8JAF	36126	2024-12-27	2023-05-05	3.1	2.18	3.07	1.5	0.008	0.97	0.0	0.05	12.50	0.01	2.237	17.42	0.87	7.3	92.7	0.0	-2.04	0.64	0.56	4.02	1.9	0.003	0.70	0.0	0.04	14.19	0.01	2.375	9.74	2.33	5.2	94.8	0.0	-1.51	0.93	0.66	0.58	2.01	3862	549	4	0	0	0	0	logfile
✔	8JA7	36125	2024-12-30	2023-05-05	3.02	3.83	3.16	3.5	0.004	0.63	0.0	0.04	13.42	0.00	2.158	15.41	0.00	4.8	95.2	0.0	-3.10	0.71	0.86	2.48	3.5	0.003	0.66	0.0	0.04	14.95	0.00	2.424	10.13	1.27	3.9	96.1	0.0	-0.50	0.95	0.69	0.86	1.91	13601	1784	6	0	2	0	0	logfile
✔	8SRP	40737	2024-12-28	2023-05-05	3.7	3.93	3.67	3.7	0.004	0.66	0.0	0.03	28.75	0.01	2.262	9.34	0.47	6.5	93.5	0.0	-1.47	0.74	0.72	2.00	3.7	0.004	0.63	0.0	0.04	28.46	0.00	2.469	10.19	7.01	7.7	92.3	0.0	-0.41	1.24	0.74	0.72	2.58	9516	849	14	214	0	0	0	logfile
✔	8JA0	36123	2024-12-30	2023-05-05	3.52	3.71	3.53	3.6	0.002	0.57	0.0	0.04	20.78	0.00	2.187	9.41	0.00	5.6	93.7	0.6	-0.68	0.73	0.79	1.35	3.6	0.003	0.61	0.0	0.04	20.54	0.00	2.503	7.96	1.74	6.9	92.7	0.4	-0.28	0.32	0.73	0.80	1.54	11291	1114	3	115	0	0	0	logfile
✔	8SR0	40716	2024-12-29	2023-05-05	3.53	3.69	3.52	3.6	0.005	0.80	2.0	0.05	14.06	0.01	2.139	9.79	0.34	8.0	92.0	0.0	-2.68	0.70	0.72	2.32	3.6	0.003	0.60	0.0	0.04	14.76	0.00	2.371	4.90	1.19	6.7	93.3	0.0	-2.18	0.47	0.70	0.73	2.09	11414	816	8	0	2	0	5426	logfile
✔	8J9W	36117	2024-12-30	2023-05-05	2.76	3.63	2.76	3.1	0.005	0.84	3.0	0.05	18.06	0.01	2.175	8.03	0.07	4.3	95.7	0.0	-1.21	0.88	0.80	1.55	3.1	0.003	0.72	0.0	0.04	18.42	0.00	2.273	10.64	1.84	4.9	95.1	0.1	0.10	1.95	0.89	0.81	1.64	13841	1550	9	60	4	0	0	logfile
✔	8SRo	40736	2024-12-27	2023-05-05	3.3	3.43	3.26	3.4	0.003	0.56	0.0	0.03	26.26	0.02	2.348	8.41	0.90	5.3	94.7	0.0	-1.78	0.66	0.78	3.49	3.4	0.004	0.60	0.0	0.04	25.99	0.00	2.560	7.58	1.79	6.8	93.2	0.0	-0.93	0.91	0.65	0.79	3.09	4132	345	8	72	0	0	0	logfile
✔	8J9Z	36120	2024-12-30	2023-05-05	3.13	3.40	3.17	3.4	0.002	0.41	0.0	0.04	16.68	0.00	2.177	4.52	0.15	2.2	97.8	0.0	1.31	0.68	0.81	3.00	3.4	0.002	0.44	0.0	0.04	17.13	0.00	2.513	3.87	1.83	2.0	98.0	0.0	1.30	0.27	0.72	0.85	3.02	12154	1494	2	0	0	0	0	logfile
✔	8J9Y	36119	2024-12-30	2023-05-05	3.16	3.43	3.20	3.5	0.002	0.50	0.0	0.04	15.11	0.00	2.167	5.43	0.76	2.2	97.8	0.0	0.63	0.70	0.82	2.44	3.5	0.002	0.48	0.0	0.04	15.91	0.00	2.588	5.18	2.14	2.0	98.0	0.0	1.25	0.34	0.69	0.83	2.76	12154	1494	2	0	0	0	0	logfile

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