Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SQB	40701	2024-12-30	2023-05-04	3.8	4.16	3.90	4.1	0.008	0.84	0.0	0.05	14.86	0.00	1.936	33.89	1.02	19.3	80.6	0.1	-5.64	0.69	0.70	1.35	4.0	0.003	0.73	0.0	0.04	16.71	0.00	2.461	11.09	3.86	9.6	90.4	0.0	-2.83	2.51	0.75	0.79	1.26	12991	1676	6	0	0	0	0	logfile
✔	8J9o	36112	2024-12-28	2023-05-04	3.4	2.47	3.47	2.1	0.003	0.75	0.0	0.04	13.17	0.01	2.192	7.33	0.00	5.6	94.4	0.0	-1.72	0.73	0.72	2.33	2.1	0.003	0.68	0.0	0.04	15.85	0.01	2.109	9.27	3.97	6.2	93.8	0.0	-0.75	0.95	0.74	0.75	2.00	7441	999	4	0	0	0	0	logfile
✔	8J9N	36111	2024-12-28	2023-05-04	3.5	2.42	3.55	2.2	0.004	0.87	0.0	0.05	13.71	0.01	2.245	6.81	0.00	6.0	94.0	0.0	-1.50	0.74	0.72	2.30	2.2	0.004	0.73	0.0	0.04	16.10	0.00	2.527	9.10	3.21	6.2	93.8	0.0	-0.70	0.40	0.74	0.73	2.14	8483	1107	5	0	0	0	0	logfile
✔	8SQL	40709	2024-12-29	2023-05-04	3.1	3.40	3.18	3.5	0.005	0.75	0.0	0.04	14.01	0.00	1.781	7.73	0.16	3.0	97.0	0.0	0.23	0.65	0.80	3.07	3.4	0.004	0.65	0.0	0.04	15.86	0.00	2.499	7.16	2.06	3.2	96.8	0.0	1.32	1.14	0.57	0.77	1.89	11218	1396	3	0	15	0	0	logfile
✔	8SQH	40705	2024-12-30	2023-05-04	3.69	4.64	3.73	4.1	0.005	1.12	1.0	0.06	19.15	0.01	1.955	3.72	0.17	4.0	96.0	0.0	-1.51	0.91	0.86	2.12	4.1	0.003	0.58	0.0	0.04	19.41	0.00	1.937	7.80	1.65	3.5	96.5	0.0	0.96	1.92	0.92	0.87	1.78	14101	1341	7	147	4	0	0	logfile
✔	8J9P	36114	2024-12-31	2023-05-04	3.4	4.20	3.32	3.8	0.003	0.62	0.0	0.04	19.68	0.00	2.020	10.67	0.26	7.0	93.0	0.0	-1.61	0.86	0.82	1.76	3.8	0.004	0.68	0.0	0.05	19.94	0.00	1.910	8.72	4.56	8.5	91.5	0.0	-1.72	0.33	0.86	0.82	1.73	16013	1743	10	83	2	0	0	logfile
✔	8SQN	40711	2024-12-29	2023-05-04	3.89	4.20	3.98	4.1	0.003	0.60	0.0	0.05	15.80	0.01	1.927	12.10	0.29	4.5	95.5	0.0	-0.99	0.65	0.72	1.62	4.1	0.003	0.60	0.0	0.04	16.13	0.00	2.199	8.56	2.82	5.8	94.2	0.0	-1.03	0.45	0.66	0.73	1.68	56304	3677	18	0	9	0	27807	logfile
✘	8SQA	40700	2024-12-30	2023-05-04	4.2	4.55	4.26	4.3	0.007	0.81	0.0	0.05	14.35	0.00	2.058	26.55	0.39	18.8	81.2	0.1	-5.75	0.78	0.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12156	1563	6	0	0	0	0	logfile
✔	8SQU	40713	2024-12-28	2023-05-04	3.28	4.37	3.34	4.0	0.003	0.63	0.0	0.05	18.10	0.00	1.967	11.66	0.00	6.3	93.7	0.0	-0.59	0.75	0.62	1.04	4.0	0.003	0.73	0.0	0.04	19.90	0.00	2.039	12.72	1.33	5.1	94.9	0.0	-0.30	2.15	0.78	0.69	1.08	7761	841	5	41	1	0	0	logfile
✔	8J9K	36110	2024-12-27	2023-05-03	3.5	3.73	3.69	3.9	0.004	0.76	0.0	0.05	15.32	0.00	2.247	7.50	0.95	8.8	91.2	0.0	-2.39	0.76	0.79	2.35	3.9	0.004	0.68	0.0	0.04	15.65	0.00	2.496	7.26	3.10	6.2	93.6	0.2	-1.46	0.44	0.77	0.80	2.37	4284	590	3	0	0	0	0	logfile
✔	8J9G	36095	2024-12-28	2023-05-03	3.5	4.24	3.47	4.0	0.003	0.52	0.0	0.04	19.06	0.00	1.995	16.89	0.25	5.7	94.3	0.0	-1.46	0.82	0.74	1.02	4.0	0.003	0.72	0.0	0.05	19.54	0.00	1.934	15.60	3.86	7.2	92.8	0.0	-1.24	0.52	0.82	0.73	1.11	7868	898	5	24	1	0	0	logfile
✔	8SPQ	40681	2024-12-30	2023-05-03	3.26	3.88	3.41	3.6	0.005	0.94	0.0	0.05	19.59	0.01	2.037	4.86	0.33	2.5	97.5	0.0	-1.26	0.84	0.86	2.37	3.6	0.004	0.58	0.0	0.04	19.37	0.00	1.878	6.26	1.57	2.9	97.1	0.0	0.82	1.58	0.85	0.88	2.36	14147	1341	7	149	4	0	0	logfile
✔	8SPR	40682	2024-12-31	2023-05-03	3.9	4.25	3.99	4.1	0.007	0.88	0.0	0.05	15.12	0.01	2.032	21.51	0.32	17.6	82.2	0.2	-5.91	0.74	0.82	2.09	4.1	0.003	0.72	0.0	0.04	16.61	0.00	2.449	10.54	2.27	9.7	90.2	0.1	-2.73	1.22	0.72	0.79	1.33	15032	1932	6	0	0	0	0	logfile
✔	8SPS	40683	2024-12-31	2023-05-03	3.0	3.64	3.06	3.4	0.008	0.88	3.0	0.05	27.01	0.01	0.574	10.67	0.53	4.6	95.3	0.1	-0.87	0.84	0.82	2.70	3.4	0.005	0.71	0.0	0.04	26.96	0.00	2.444	9.48	2.67	4.6	95.4	0.0	1.33	0.69	0.85	0.86	2.51	16515	1334	14	294	0	0	0	logfile
✔	8oXZ	17269	2024-12-28	2023-05-03	3.7	2.53	3.77	3.3	0.005	0.82	0.0	0.05	18.24	0.01	2.167	15.48	1.23	7.0	93.0	0.0	-1.59	0.70	0.66	0.85	2.2	0.005	0.83	0.0	0.05	16.98	0.00	2.361	13.28	4.46	7.0	93.0	0.0	-1.54	1.07	0.72	0.71	1.95	8324	1078	4	0	8	0	0	logfile
✔	8SPU	40686	2024-12-31	2023-05-03	2.8	3.51	2.94	3.2	0.008	0.91	3.0	0.05	27.15	0.01	1.874	10.56	0.47	4.4	95.6	0.1	-0.88	0.87	0.86	3.01	3.2	0.008	0.72	0.0	0.04	27.32	0.01	2.431	7.47	2.70	4.7	95.3	0.0	1.54	1.63	0.86	0.88	3.10	16181	1285	13	298	0	0	0	logfile
✔	8J8M	36074	2024-12-28	2023-05-02	3.58	4.41	3.60	4.1	0.005	0.68	0.0	0.05	20.77	0.02	2.203	8.97	0.89	4.7	95.3	0.0	0.67	0.65	0.79	1.13	4.1	0.003	0.71	0.0	0.04	17.67	0.00	2.399	7.62	0.89	4.6	95.4	0.0	1.46	0.49	0.65	0.82	0.89	7362	933	7	0	8	0	0	logfile
✔	8J97	36090	2024-12-27	2023-05-02	3.2	2.37	3.18	1.6	0.007	0.92	1.0	0.05	13.20	0.01	2.266	9.42	0.28	5.8	94.2	0.0	-1.02	0.73	0.71	3.94	1.7	0.004	0.71	0.0	0.05	14.72	0.01	2.558	7.92	2.25	6.2	93.8	0.0	-0.44	0.43	0.73	0.71	2.78	3863	544	4	0	0	0	0	logfile
✔	8SP8	40676	2024-12-26	2023-05-02	2.79	3.19	3.00	3.2	0.014	1.17	0.0	0.06	16.36	0.01	2.073	2.78	0.00	8.2	91.8	0.0	-4.84	0.53	0.77	4.48	3.2	0.004	0.66	0.0	0.04	16.24	0.00	2.147	11.42	1.84	7.3	92.7	0.0	-0.18	1.39	0.52	0.80	3.56	40942	2448	8	0	50	0	19860	logfile
✔	8SPB	40678	2024-12-27	2023-05-02	3.2	3.73	1.22	3.6	0.003	0.73	0.0	0.05	17.30	0.00	2.227	10.41	1.18	6.9	93.1	0.0	-1.37	0.55	0.77	1.49	3.6	0.003	0.68	0.0	0.04	18.08	0.00	2.481	11.23	4.34	6.7	93.2	0.1	-1.11	0.98	0.48	0.75	1.02	6726	828	6	0	0	0	0	logfile

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