Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oWK	17239	2024-12-27	2023-04-28	3.86	3.20	3.47	4.0	0.013	3.09	0.0	0.12	7.40	0.01	2.508	14.24	3.23	0.0	100.0	0.0	0.74	0.46	0.67	5.30	4.0	0.006	0.85	0.0	0.05	14.40	0.00	2.462	17.09	0.97	6.3	93.7	0.0	-3.39	1.71	0.49	0.74	6.86	3050	400	10	0	0	0	0	logfile
✔	8J77	36030	2024-12-27	2023-04-27	3.7	3.92	3.74	4.0	0.006	1.03	0.0	0.06	15.39	0.01	2.149	13.42	0.27	8.6	91.4	0.0	-0.89	0.59	0.78	2.99	4.0	0.003	0.67	0.0	0.04	15.32	0.00	2.578	7.57	2.65	6.8	93.2	0.0	0.61	0.51	0.55	0.76	2.20	3778	493	3	0	4	0	0	logfile
✔	8SNo	40631	2024-12-27	2023-04-27	2.78	3.06	2.77	3.0	0.004	0.71	0.0	0.04	12.79	0.00	2.127	9.82	0.00	5.5	94.5	0.0	-0.11	0.64	0.83	2.65	3.1	0.004	0.59	0.0	0.04	15.79	0.00	2.292	4.64	2.06	4.5	95.5	0.0	0.54	1.27	0.63	0.86	2.39	5685	718	3	0	1	0	0	logfile
✔	8J76	36029	2024-12-27	2023-04-27	3.7	3.88	3.80	3.9	0.007	1.24	4.0	0.09	15.61	0.00	1.926	14.52	0.27	7.0	93.0	0.0	-1.36	0.50	0.72	1.35	4.0	0.003	0.75	0.0	0.04	16.05	0.00	2.535	10.93	3.45	5.1	94.9	0.0	0.43	0.55	0.49	0.72	1.47	3771	493	2	0	3	0	0	logfile
✔	8J74	36025	2024-12-28	2023-04-27	3.6	3.95	3.85	3.9	0.004	0.73	0.0	0.05	24.91	0.00	2.203	15.84	0.00	6.0	94.0	0.0	0.74	0.63	0.81	1.38	3.9	0.003	0.68	0.0	0.04	16.95	0.00	2.410	12.85	2.89	5.2	94.8	0.0	0.98	0.40	0.62	0.81	1.56	8288	1030	6	0	14	0	0	logfile
✘	8SNL	40628	2024-12-28	2023-04-27	2.78	3.35	2.84	3.3	0.004	0.73	0.0	0.05	13.03	0.01	2.183	10.77	0.00	5.7	94.3	0.0	-0.70	0.61	0.78	3.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9098	1147	3	0	2	0	0	logfile
✔	8SNE	40624	2024-12-28	2023-04-27	3.0	3.23	3.07	3.3	0.008	0.74	0.0	0.05	17.69	0.00	2.108	5.84	0.63	4.7	95.2	0.1	0.12	0.62	0.80	2.80	3.3	0.003	0.55	0.0	0.04	17.31	0.00	2.180	5.01	2.69	4.1	95.7	0.1	0.62	0.30	0.60	0.81	2.26	6025	735	6	1	6	0	0	logfile
✔	8SNM	40629	2024-12-28	2023-04-27	3.84	4.11	3.83	4.0	0.004	0.74	0.0	0.05	13.05	0.01	2.183	11.42	0.00	5.6	94.4	0.0	-0.67	0.68	0.78	2.04	4.0	0.003	0.67	0.0	0.04	16.06	0.00	2.254	8.48	1.92	5.0	95.0	0.0	0.11	0.98	0.71	0.82	0.96	8986	1134	4	0	2	0	0	logfile
✔	8J7M	36042	2024-12-28	2023-04-27	3.1	3.57	3.19	3.5	0.011	1.24	6.0	0.08	18.14	0.01	2.124	16.26	1.27	8.3	91.7	0.0	-2.26	0.63	0.80	4.42	3.5	0.003	0.58	0.0	0.04	16.45	0.00	2.443	7.00	1.74	5.1	94.9	0.0	0.70	0.44	0.64	0.83	3.68	8806	1028	8	0	14	0	0	logfile
✔	8SNH	40625	2024-12-26	2023-04-27	2.7	2.39	2.83	2.4	0.007	0.82	1.0	0.06	18.28	0.00	1.908	10.56	1.04	2.9	97.0	0.1	0.51	0.73	0.83	4.22	2.4	0.005	0.68	0.0	0.04	17.22	0.00	2.095	12.44	1.29	3.2	96.8	0.0	0.90	0.36	0.74	0.85	4.09	43557	2992	24	0	24	0	19392	logfile
✔	8oWE	17235	2024-12-27	2023-04-27	3.75	3.64	3.54	3.8	0.014	2.47	20.0	0.17	22.52	0.03	1.831	11.09	18.33	1.4	98.6	0.0	-2.67	0.41	0.73	5.00	3.7	0.003	0.81	0.0	0.05	18.24	0.00	2.593	13.52	6.33	7.4	92.6	0.0	-3.82	1.48	0.43	0.76	5.27	2940	385	10	0	0	0	0	logfile
✔	8SND	40623	2024-12-27	2023-04-27	3.1	3.43	3.22	3.5	0.007	0.59	0.0	0.04	17.17	0.00	2.254	4.23	0.00	1.6	98.2	0.1	1.20	0.60	0.80	2.97	3.4	0.003	0.48	0.0	0.04	16.97	0.00	2.234	3.56	3.80	2.6	97.3	0.1	1.28	0.30	0.62	0.81	2.98	6090	742	4	0	6	8	0	logfile
✔	8J75	36027	2024-12-27	2023-04-27	3.6	3.91	3.75	3.9	0.004	0.72	0.0	0.04	20.25	0.00	2.261	16.76	0.00	8.0	91.8	0.2	0.40	0.57	0.69	1.64	3.9	0.003	0.69	0.0	0.04	15.99	0.00	2.439	12.19	5.09	6.4	93.4	0.2	0.59	0.35	0.54	0.71	1.24	3956	515	3	0	4	0	0	logfile
✔	8J7P	36045	2024-12-27	2023-04-27	3.4	3.38	2.86	3.4	0.009	0.81	0.0	0.06	12.54	0.00	2.025	16.13	0.00	15.0	85.0	0.0	-5.75	0.35	0.87	6.32	3.5	0.003	0.65	0.0	0.05	15.35	0.00	2.534	7.68	2.38	8.5	91.5	0.0	-4.93	0.51	0.33	0.87	5.60	3258	405	3	0	0	0	0	logfile
✔	8oWD	17234	2024-12-27	2023-04-27	3.28	3.36	1.89	3.4	0.012	2.44	0.0	0.12	21.08	0.00	2.506	5.03	16.13	0.0	100.0	0.0	-0.81	0.49	0.81	4.66	3.4	0.006	0.77	0.0	0.05	17.46	0.00	2.567	12.73	7.74	2.1	97.9	0.0	-3.48	0.71	0.46	0.79	6.23	1525	200	5	0	0	0	0	logfile
✔	8J7F	36039	2024-12-29	2023-04-27	2.6	2.84	2.57	2.9	0.009	1.12	1.0	0.07	16.63	0.00	1.812	21.63	0.40	4.5	95.4	0.1	-2.36	0.56	0.74	3.35	2.9	0.003	0.59	0.0	0.04	15.58	0.00	2.454	7.93	1.71	3.2	96.8	0.0	1.41	1.15	0.57	0.76	2.60	9961	1176	13	0	20	10	0	logfile
✔	8J7N	36043	2024-12-27	2023-04-27	3.0	3.05	2.62	3.0	0.008	0.82	0.0	0.06	12.26	0.00	2.025	16.74	0.00	13.5	86.5	0.0	-5.22	0.42	0.90	5.56	3.0	0.003	0.69	0.0	0.05	15.66	0.00	2.557	6.91	3.17	10.0	90.0	0.0	-4.12	1.29	0.40	0.91	4.55	3258	405	3	0	0	0	0	logfile
✔	8J73	36024	2024-12-27	2023-04-27	4.16	4.47	4.31	3.9	0.002	0.46	0.0	0.04	12.68	0.00	2.241	9.90	0.20	1.6	98.4	0.0	1.65	0.68	0.44	—	3.9	0.003	0.64	0.0	0.04	12.17	0.00	2.325	11.96	0.00	2.9	97.1	0.0	0.48	1.49	0.81	0.70	—	49152	6396	12	0	0	0	0	logfile
✔	8J7H	36041	2024-12-29	2023-04-27	3.3	3.45	3.16	3.5	0.004	0.75	0.0	0.05	13.74	0.01	2.232	13.20	0.10	4.4	95.6	0.0	0.52	0.56	0.73	3.80	3.6	0.004	0.58	0.0	0.04	15.42	0.00	2.481	10.68	1.12	4.0	96.0	0.0	0.47	0.46	0.58	0.77	3.14	9457	1180	6	0	0	1	0	logfile
✔	8SMP	40598	2024-12-27	2023-04-26	3.4	3.42	3.22	3.4	0.002	0.53	0.0	0.04	16.40	0.00	2.186	6.37	0.30	4.1	95.7	0.1	1.14	0.61	0.79	2.42	3.4	0.004	0.61	0.0	0.04	16.89	0.00	1.931	5.62	3.94	4.8	95.0	0.1	0.92	2.17	0.69	0.85	2.38	6097	757	5	1	1	0	0	logfile

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