Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SMP	40598	2024-12-27	2023-04-26	3.4	3.42	3.22	3.4	0.002	0.53	0.0	0.04	16.40	0.00	2.186	6.37	0.30	4.1	95.7	0.1	1.14	0.61	0.79	2.42	3.4	0.004	0.61	0.0	0.04	16.89	0.00	1.931	5.62	3.94	4.8	95.0	0.1	0.92	2.17	0.69	0.85	2.38	6097	757	5	1	1	0	0	logfile
✔	8J6M	36008	2024-12-29	2023-04-26	2.77	2.98	2.81	3.0	0.008	1.10	5.0	0.08	16.07	0.01	1.857	12.21	1.59	2.3	97.6	0.1	0.97	0.60	0.79	4.07	3.0	0.004	0.58	0.0	0.04	16.06	0.00	1.822	7.00	3.18	2.0	98.0	0.0	1.76	1.11	0.65	0.83	3.87	10599	1282	5	0	13	2	0	logfile
✔	8SN2	40610	2024-12-30	2023-04-26	3.6	3.75	3.64	3.8	0.003	0.53	0.0	0.03	25.92	0.00	2.058	7.23	0.00	1.8	98.2	0.0	2.22	0.75	0.83	1.35	3.8	0.003	0.59	0.0	0.03	26.84	0.00	2.134	6.76	1.99	2.9	97.1	0.0	1.99	0.37	0.73	0.84	0.85	13992	1000	13	294	2	0	0	logfile
✔	8SMW	40604	2024-12-30	2023-04-26	3.3	3.47	3.30	3.5	0.003	0.53	0.0	0.03	26.23	0.00	2.124	5.51	0.00	2.6	97.4	0.0	1.72	0.73	0.85	3.28	3.5	0.003	0.55	0.0	0.03	26.47	0.00	2.164	5.39	0.82	2.4	97.6	0.0	2.18	1.35	0.72	0.86	2.69	13998	1000	13	294	2	0	0	logfile
✔	8SN4	40612	2024-12-30	2023-04-26	3.7	3.82	3.66	3.7	0.003	0.55	0.0	0.03	25.75	0.00	2.136	8.20	0.00	2.3	97.7	0.0	1.84	0.82	0.85	1.24	3.7	0.007	0.83	1.0	0.04	26.74	0.01	2.052	9.13	3.03	3.8	96.2	0.0	1.62	0.37	0.82	0.86	1.22	14600	1076	14	294	2	0	0	logfile
✘	8J6i	36005	2024-12-28	2023-04-26	2.92	2.81	2.83	3.0	0.006	0.63	0.0	0.04	16.60	0.01	2.167	8.17	0.00	3.7	96.2	0.1	1.37	0.53	0.71	2.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8801	1131	6	0	1	0	0	logfile
✔	8SN3	40611	2024-12-30	2023-04-26	3.8	3.89	3.81	3.8	0.003	0.55	0.0	0.03	25.55	0.00	2.164	8.86	0.00	2.6	97.4	0.0	1.98	0.83	0.84	1.28	3.8	0.003	0.62	0.0	0.04	26.46	0.00	2.096	8.19	2.38	2.9	97.1	0.0	1.75	1.39	0.82	0.84	0.97	14612	1078	14	294	2	0	0	logfile
✔	8SMK	40589	2024-12-31	2023-04-26	3.5	3.69	3.50	3.6	0.011	1.38	0.0	0.06	11.02	0.01	2.043	0.39	0.00	1.5	98.5	0.0	1.26	0.68	0.80	3.28	3.6	0.003	0.64	0.0	0.04	14.29	0.00	2.207	5.26	1.45	2.2	97.8	0.0	1.34	1.45	0.73	0.84	2.63	15298	1982	8	0	8	0	0	logfile
✔	8J6S	36013	2024-12-29	2023-04-26	3.8	5.06	3.99	3.8	0.004	0.79	0.0	0.04	29.58	0.01	1.907	22.08	1.06	3.9	96.1	0.0	-0.40	0.83	0.73	1.29	3.9	0.005	1.04	0.0	0.04	29.86	0.00	1.961	21.50	5.29	2.9	97.1	0.0	0.22	0.74	0.88	0.84	0.57	10030	933	12	197	0	0	0	logfile
✔	8J6R	36012	2024-12-28	2023-04-26	2.76	2.15	2.84	2.0	0.004	0.62	0.0	0.06	13.55	0.01	2.116	6.13	0.00	2.6	97.4	0.0	0.52	0.76	0.75	3.17	2.0	0.003	0.57	0.0	0.04	16.13	0.00	2.568	5.75	2.51	2.4	97.6	0.0	0.87	1.08	0.78	0.79	3.25	9120	1151	6	0	2	1	0	logfile
✔	8SN6	40614	2024-12-30	2023-04-26	3.7	3.89	3.71	3.8	0.004	0.57	0.0	0.03	25.93	0.00	2.084	7.45	0.11	2.5	97.5	0.0	1.99	0.85	0.86	1.06	3.8	0.004	0.66	0.0	0.04	26.30	0.00	2.108	8.20	1.52	3.1	96.9	0.0	2.06	1.39	0.84	0.86	0.70	14600	1076	14	294	2	0	0	logfile
✔	8SNA	40618	2024-12-30	2023-04-26	4.0	4.05	3.94	3.9	0.004	0.59	0.0	0.03	25.68	0.00	2.125	10.00	0.00	3.3	96.7	0.0	1.91	0.85	0.86	—	3.9	0.004	0.63	0.0	0.04	26.38	0.00	2.070	9.47	2.71	3.7	96.3	0.0	1.70	0.40	0.85	0.86	—	14591	1076	14	294	2	0	0	logfile
✔	8SN8	40616	2024-12-30	2023-04-26	3.7	3.84	3.67	3.7	0.003	0.54	0.0	0.03	25.62	0.00	2.185	8.31	0.00	2.1	97.9	0.0	2.06	0.84	0.86	0.82	3.7	0.003	0.60	0.0	0.04	26.39	0.00	2.090	7.41	2.92	2.6	97.4	0.0	1.94	0.33	0.83	0.85	0.61	14600	1076	14	294	2	0	0	logfile
✔	8SMZ	40607	2024-12-30	2023-04-26	3.2	3.42	3.24	3.4	0.004	0.57	0.0	0.04	26.57	0.00	2.227	5.43	0.00	2.8	97.2	0.0	1.15	0.73	0.84	3.11	3.4	0.004	0.57	0.0	0.04	26.79	0.00	2.191	4.30	0.82	2.8	97.2	0.0	1.52	0.19	0.70	0.85	2.62	13998	1000	13	294	2	0	0	logfile
✔	8J6J	36006	2024-12-28	2023-04-26	2.8	2.60	2.74	2.9	0.004	0.62	0.0	0.04	14.73	0.00	2.098	8.22	0.21	2.6	97.4	0.0	1.70	0.45	0.63	1.61	2.8	0.003	1.01	1.0	0.04	16.30	0.00	2.347	8.50	3.23	3.6	96.4	0.0	0.73	1.06	0.61	0.78	2.60	8979	1151	6	0	1	0	0	logfile
✔	8J6Q	36011	2024-12-29	2023-04-26	2.6	2.86	2.68	2.8	0.005	0.69	0.0	0.05	13.24	0.00	2.191	7.12	0.00	2.7	97.3	0.0	0.40	0.69	0.81	4.26	2.8	0.003	0.57	0.0	0.04	15.50	0.00	2.491	7.67	1.51	3.0	97.0	0.0	0.87	0.39	0.68	0.84	4.14	9187	1151	6	0	5	1	0	logfile
✔	8oVX	17225	2024-12-27	2023-04-26	3.4	4.18	3.32	3.7	0.004	0.98	0.0	0.05	13.53	0.00	2.209	6.80	0.00	4.8	95.2	0.0	-1.04	0.80	0.70	1.05	3.8	0.003	0.76	0.0	0.04	15.90	0.00	2.398	14.36	2.85	4.5	95.5	0.0	0.75	0.64	0.81	0.72	1.11	6763	885	6	0	0	0	0	logfile
✔	8oVK	17218	2024-12-27	2023-04-26	2.88	3.04	1.81	3.2	0.012	1.80	0.0	0.11	14.99	0.01	2.386	4.35	12.90	5.3	94.7	0.0	-1.83	0.53	0.84	5.68	3.1	0.003	0.67	0.0	0.05	18.10	0.00	2.546	9.87	4.84	2.4	97.6	0.0	-3.00	0.65	0.53	0.85	5.87	3060	400	10	0	0	0	0	logfile
✔	8oVM	17223	2024-12-27	2023-04-26	3.24	3.35	1.89	3.4	0.007	0.99	0.0	0.09	11.00	0.00	2.447	9.68	0.00	2.9	97.1	0.0	-3.60	0.43	0.78	4.59	3.4	0.003	0.75	0.0	0.05	14.25	0.00	2.611	7.82	5.71	6.5	93.5	0.0	-3.33	1.51	0.45	0.80	3.88	1360	180	5	0	0	0	0	logfile
✔	8SMV	40603	2024-12-28	2023-04-26	2.74	3.28	2.72	3.2	0.004	0.65	0.0	0.04	12.72	0.00	2.162	1.85	0.00	3.0	97.0	0.0	0.53	0.76	0.85	3.47	3.2	0.004	0.64	0.0	0.05	15.67	0.00	2.403	4.06	2.62	3.1	96.9	0.0	0.82	1.30	0.72	0.88	2.83	8169	1034	6	0	1	0	0	logfile

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