Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oTX	17186	2024-12-31	2023-04-21	3.08	3.75	3.14	3.5	0.003	0.44	0.0	0.04	17.93	0.00	2.057	35.10	0.00	6.1	93.9	0.0	2.35	0.74	0.84	1.46	3.6	0.005	0.98	2.0	0.04	17.97	0.00	2.432	8.00	3.07	4.6	95.3	0.1	2.26	0.33	0.76	0.86	1.22	15966	2108	6	0	4	2	0	logfile
✔	8J57	35982	2024-12-27	2023-04-21	2.85	3.16	2.85	3.2	0.013	1.67	0.0	0.09	13.66	0.01	2.397	6.43	0.00	3.0	97.0	0.0	-0.42	0.63	0.88	4.02	3.2	0.003	0.65	0.0	0.04	15.09	0.00	2.587	7.35	1.10	1.4	98.6	0.0	4.42	0.87	0.51	0.84	1.85	7007	943	17	0	7	0	0	logfile
✔	8oTS	17183	2024-12-30	2023-04-21	3.3	4.05	3.44	3.6	0.009	1.03	0.0	0.06	25.59	0.01	2.508	0.66	0.63	0.3	99.7	0.0	1.70	0.89	0.85	2.32	3.7	0.004	0.56	0.0	0.03	25.67	0.00	2.447	5.86	1.58	1.7	98.3	0.0	4.82	0.61	0.89	0.87	1.40	13160	985	18	254	8	0	0	logfile
✔	8oTi	17180	2024-12-27	2023-04-20	2.7	2.46	2.62	2.8	0.012	1.63	0.0	0.10	13.67	0.01	2.388	3.56	5.30	2.7	97.3	0.0	-3.63	0.41	0.92	6.96	2.8	0.004	0.66	0.0	0.05	17.28	0.00	2.598	3.13	4.29	1.8	98.2	0.0	-1.97	1.26	0.38	0.90	5.67	3444	450	6	0	0	0	0	logfile
✔	8oT3	17167	2024-12-27	2023-04-20	2.73	3.21	2.60	3.2	0.014	2.33	0.0	0.13	16.88	0.01	2.559	0.00	0.00	0.0	100.0	0.0	-3.27	0.52	0.76	7.19	3.2	0.004	0.78	0.0	0.05	16.53	0.00	2.543	6.44	2.78	3.8	96.2	0.0	-3.36	1.85	0.42	0.79	7.31	2460	336	12	0	0	0	0	logfile
✔	8SKR	40565	2024-12-29	2023-04-20	2.99	3.74	3.11	3.5	0.004	0.57	0.0	0.04	10.59	0.00	2.219	7.13	0.00	2.4	97.6	0.0	2.30	0.81	0.85	2.93	3.6	0.003	0.50	0.0	0.04	12.45	0.00	2.566	5.07	1.65	2.1	97.9	0.0	2.52	0.39	0.80	0.85	3.20	6332	804	4	0	2	0	0	logfile
✔	8SL1	40571	2024-12-27	2023-04-20	3.13	3.37	3.20	3.4	0.003	0.61	0.0	0.06	16.40	0.00	2.223	8.71	0.68	5.0	95.0	0.0	-0.41	0.64	0.73	2.11	3.4	0.003	0.59	0.0	0.04	16.74	0.00	2.273	7.85	2.59	4.9	95.1	0.0	0.07	0.36	0.63	0.73	2.20	6608	843	3	0	6	1	0	logfile
✔	8oT1	17166	2024-12-27	2023-04-20	2.59	3.30	2.25	3.4	0.013	2.40	0.0	0.13	17.35	0.01	2.477	0.00	0.00	0.0	100.0	0.0	-3.37	0.47	0.69	6.48	3.4	0.004	0.93	0.0	0.05	16.54	0.00	2.643	9.86	2.78	5.1	94.9	0.0	-1.78	1.53	0.38	0.72	5.29	2460	336	12	0	0	0	0	logfile
✔	8oTH	17179	2024-12-27	2023-04-20	3.4	3.31	3.19	3.4	0.009	1.55	0.0	0.09	14.03	0.01	2.287	8.71	1.52	9.6	90.4	0.0	-4.34	0.37	0.85	6.61	3.4	0.003	0.69	0.0	0.05	16.00	0.00	2.596	5.29	3.33	3.6	96.4	0.0	-2.25	1.37	0.36	0.82	5.11	2870	375	5	0	0	0	0	logfile
✔	8oT9	17173	2024-12-27	2023-04-20	3.4	3.23	3.29	3.4	0.009	1.75	0.0	0.10	15.35	0.01	2.415	3.56	6.82	4.1	95.9	0.0	-5.00	0.43	0.90	6.48	3.3	0.003	0.72	0.0	0.05	15.62	0.00	2.588	5.27	1.26	0.9	99.1	0.0	-2.17	1.00	0.40	0.88	5.63	3444	450	6	0	0	0	0	logfile
✘	8oTD	17175	2024-12-27	2023-04-20	2.6	2.53	2.39	2.8	0.008	1.48	4.0	0.10	16.82	0.01	2.073	4.15	4.76	8.3	91.7	0.0	-3.89	0.48	0.88	6.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4340	540	4	0	0	0	0	logfile
✔	8oTF	17177	2024-12-27	2023-04-20	3.3	3.19	3.03	3.4	0.010	1.53	0.0	0.10	16.15	0.01	2.614	4.72	4.35	6.9	93.1	0.0	-4.64	0.49	0.92	5.83	3.4	0.005	0.62	0.0	0.05	16.00	0.00	2.525	5.08	0.72	0.0	100.0	0.0	-1.06	0.45	0.43	0.90	5.83	1350	186	6	0	0	0	0	logfile
✔	8oT4	17168	2024-12-27	2023-04-20	2.97	3.23	2.90	3.5	0.012	2.30	0.0	0.13	15.19	0.01	2.527	0.00	0.00	0.0	100.0	0.0	-3.85	0.61	0.76	5.14	3.5	0.007	0.83	0.0	0.05	18.26	0.00	2.607	9.86	2.87	4.3	95.7	0.0	-2.73	1.34	0.61	0.80	4.38	3444	444	12	0	0	0	0	logfile
✔	8SKS	40566	2024-12-27	2023-04-20	2.91	3.52	2.94	3.4	0.004	0.55	0.0	0.04	11.98	0.00	1.880	7.37	0.00	3.1	96.9	0.0	0.81	0.82	0.84	5.54	3.4	0.004	0.59	0.0	0.04	15.05	0.00	1.990	4.91	3.16	3.6	96.4	0.0	1.05	1.15	0.82	0.84	5.20	6232	792	8	0	4	0	0	logfile
✔	8oTJ	17181	2024-12-27	2023-04-20	3.3	3.37	3.07	3.5	0.008	1.80	7.0	0.11	16.48	0.01	2.400	7.78	4.48	12.4	87.6	0.0	-5.06	0.42	0.87	4.78	3.5	0.005	0.74	0.0	0.05	16.27	0.00	2.553	5.39	1.92	6.1	93.9	0.0	-2.93	0.62	0.38	0.83	5.04	4109	539	7	0	0	0	0	logfile
✔	8oST	17164	2024-12-28	2023-04-20	3.69	3.89	3.67	3.9	0.002	0.52	0.0	0.04	22.67	0.01	2.203	5.42	0.27	1.2	98.8	0.0	0.21	0.55	0.52	0.26	3.9	0.003	0.54	0.0	0.04	22.35	0.00	2.304	5.64	2.13	2.8	97.2	0.0	0.20	1.45	0.61	0.62	0.23	8955	432	4	69	2	0	4058	logfile
✔	8oTE	17176	2024-12-28	2023-04-20	3.6	3.19	3.39	4.1	0.009	1.70	8.0	0.10	18.70	0.01	2.378	5.19	6.35	15.8	84.2	0.0	-4.51	0.44	0.82	5.34	4.1	0.005	0.82	0.0	0.05	17.19	0.00	2.423	11.54	4.86	9.9	90.1	0.0	-3.99	1.05	0.39	0.77	4.34	8680	1080	8	0	0	0	0	logfile
✘	8SL0	40570	2024-12-27	2023-04-20	3.3	4.17	3.09	3.8	0.003	0.62	0.0	0.05	16.00	0.00	2.201	7.96	0.00	8.4	91.2	0.4	-1.67	0.42	0.83	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1737	228	1	0	0	0	0	logfile
✔	8oTG	17178	2024-12-27	2023-04-20	2.1	2.26	2.03	2.1	0.009	1.12	0.0	0.07	11.34	0.01	2.479	1.02	3.03	2.7	97.3	0.0	-2.90	0.45	0.91	7.89	2.1	0.004	0.69	0.0	0.05	14.60	0.00	2.636	1.88	1.52	1.6	98.4	0.0	-1.70	1.39	0.46	0.93	7.10	2870	375	5	0	0	0	0	logfile
✔	8oTC	17174	2024-12-27	2023-04-20	3.2	3.09	3.11	3.2	0.009	1.34	0.0	0.08	12.55	0.01	2.536	1.99	1.52	4.1	95.9	0.0	-3.28	0.40	0.83	5.98	3.2	0.004	0.67	0.0	0.05	14.60	0.00	2.415	6.40	1.77	1.8	98.2	0.0	-1.88	1.49	0.34	0.81	5.11	3444	450	6	0	0	0	0	logfile

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