Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SKR	40565	2024-12-29	2023-04-20	2.99	3.74	3.11	3.5	0.004	0.57	0.0	0.04	10.59	0.00	2.219	7.13	0.00	2.4	97.6	0.0	2.30	0.81	0.85	2.93	3.6	0.003	0.50	0.0	0.04	12.45	0.00	2.566	5.07	1.65	2.1	97.9	0.0	2.52	0.39	0.80	0.85	3.20	6332	804	4	0	2	0	0	logfile
✔	8J47	35972	2024-12-27	2023-04-19	2.5	2.05	2.32	2.2	0.004	0.74	0.0	0.06	18.27	0.00	2.518	4.26	2.38	9.3	90.7	0.0	-2.51	0.30	0.75	4.89	2.2	0.002	0.66	0.0	0.05	17.68	0.00	2.613	2.60	7.62	11.1	88.9	0.0	-3.15	0.47	0.44	0.85	4.56	2080	290	10	0	0	0	0	logfile
✔	8oSK	17157	2024-12-30	2023-04-19	3.6	4.91	—	3.0	0.009	1.12	0.0	0.06	24.39	0.01	2.263	0.52	0.00	0.3	99.7	0.0	1.80	0.86	0.79	0.46	3.0	0.004	0.75	0.0	0.04	26.26	0.00	2.411	7.25	1.56	2.2	97.8	0.0	1.47	1.21	0.87	0.82	0.44	13995	1343	12	248	0	0	0	logfile
✔	8oSL	17160	2024-12-30	2023-04-19	4.9	8.34	6.27	6.8	0.005	0.80	0.0	0.05	28.01	0.00	2.363	2.30	0.00	1.1	98.9	0.0	-0.07	0.81	0.71	—	6.9	0.007	0.78	0.0	0.04	35.40	0.01	2.259	99.58	0.00	10.5	89.5	0.0	-0.63	3.47	0.87	0.82	—	13541	1441	14	294	0	0	301	logfile
✔	8J46	35971	2024-12-27	2023-04-19	3.66	4.32	3.59	4.1	0.004	0.77	0.0	0.05	9.52	0.01	2.463	0.54	0.00	0.9	99.1	0.0	2.69	0.47	0.72	2.69	4.1	0.003	0.59	0.0	0.04	11.16	0.00	2.480	4.05	3.85	2.3	97.7	0.0	3.39	1.08	0.49	0.77	2.07	2158	362	1	0	0	0	0	logfile
✔	8oSG	17152	2024-12-31	2023-04-18	3.8	4.13	3.92	4.0	0.004	0.74	0.0	0.04	18.75	0.00	2.009	9.70	0.19	8.1	91.8	0.1	-1.30	0.80	0.83	0.89	4.0	0.003	0.65	0.0	0.04	18.73	0.00	1.993	6.42	3.95	6.4	93.6	0.0	-1.00	0.36	0.80	0.82	0.75	14536	1833	12	0	10	0	0	logfile
✔	8SK6	40556	2024-12-30	2023-04-18	2.96	3.57	3.01	3.4	0.002	0.44	0.0	0.04	8.10	0.00	2.218	5.79	0.86	0.4	99.6	0.0	0.87	0.84	0.88	4.80	3.4	0.005	0.61	0.0	0.04	12.68	0.00	2.515	5.40	1.15	1.4	98.6	0.0	0.81	0.46	0.83	0.88	4.30	12858	1686	6	0	0	0	0	logfile
✔	8oSH	17153	2024-12-27	2023-04-18	4.9	5.59	5.45	4.9	0.006	0.94	0.0	0.06	3.38	0.00	2.299	5.83	0.00	11.2	88.7	0.1	-0.55	0.82	0.82	—	4.9	0.003	0.63	0.0	0.04	4.47	0.00	2.431	3.78	0.00	14.2	85.8	0.0	-0.91	0.54	0.83	0.85	—	6770	1372	5	0	0	0	0	logfile
✔	8J3W	35967	2024-12-29	2023-04-18	3.07	3.28	3.11	3.3	0.004	0.68	0.0	0.04	13.93	0.00	1.891	16.07	0.00	3.8	96.2	0.0	-1.89	0.58	0.76	2.14	3.3	0.004	0.64	0.0	0.04	15.50	0.00	2.527	9.73	1.69	1.4	98.6	0.0	0.52	1.24	0.56	0.78	1.35	9739	1218	2	0	1	0	0	logfile
✘	8oRS	17131	2024-12-29	2023-04-17	4.3	3.48	3.31	3.3	0.003	0.55	0.0	0.05	13.61	0.00	2.121	7.43	0.00	4.5	95.5	0.0	0.02	0.49	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10124	1298	4	0	2	0	0	logfile
✔	8SiY	40522	2024-12-31	2023-04-17	2.9	3.59	2.98	3.2	0.006	0.64	0.0	0.05	26.20	0.01	1.993	5.69	1.38	2.8	97.2	0.0	1.37	0.87	0.83	3.33	3.2	0.003	0.64	0.0	0.04	27.08	0.00	2.507	8.19	2.44	3.4	96.5	0.1	2.02	0.64	0.87	0.89	2.37	14844	1118	12	294	0	0	0	logfile
✔	8SiE	40507	2024-12-29	2023-04-16	2.7	2.88	2.78	2.9	0.005	0.67	0.0	0.17	21.89	0.01	1.491	5.47	0.19	3.7	96.3	0.0	1.29	0.63	0.84	2.81	2.9	0.003	0.54	0.0	0.04	16.08	0.00	2.385	5.09	1.91	3.6	96.4	0.0	1.40	0.33	0.62	0.86	2.66	10398	1226	4	0	38	0	0	logfile
✔	8SiK	40508	2024-12-31	2023-04-16	2.9	3.14	2.92	3.2	0.003	0.51	0.0	0.04	15.67	0.00	2.206	6.55	0.96	1.7	98.3	0.0	2.43	0.56	0.79	4.00	3.2	0.004	0.54	0.0	0.04	16.09	0.00	2.232	4.97	2.53	1.8	98.2	0.0	2.29	0.21	0.64	0.85	3.77	15832	1984	12	0	8	0	0	logfile
✘	8J26	35945	2024-12-27	2023-04-14	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5406	427	6	90	1	0	0	logfile
✔	8oRJ	17127	2024-12-27	2023-04-14	3.3	4.22	3.35	3.9	0.012	1.75	1.0	0.10	16.33	0.01	1.914	5.39	3.16	2.3	97.7	0.0	-0.70	0.86	0.78	2.17	3.8	0.003	0.75	0.0	0.05	17.28	0.00	2.034	11.72	2.48	2.3	97.7	0.0	0.18	2.31	0.85	0.83	1.60	6930	882	4	0	4	0	0	logfile
✔	8J27	35946	2024-12-27	2023-04-14	3.6	4.45	3.51	4.3	0.006	0.90	0.0	0.05	17.19	0.00	2.233	25.16	4.72	6.8	93.2	0.0	-1.70	0.53	0.72	0.93	4.3	0.003	0.88	0.0	0.04	18.12	0.00	2.487	12.48	3.94	7.2	92.8	0.0	-0.52	1.41	0.51	0.76	1.17	2393	307	5	0	1	0	0	logfile
✔	8J24	35944	2024-12-28	2023-04-14	2.6	2.10	2.66	1.8	0.002	0.55	2.0	0.06	18.15	0.00	2.131	6.42	3.11	1.9	97.9	0.2	1.18	0.80	0.79	2.75	1.6	0.002	0.56	0.0	0.04	18.15	0.00	2.417	6.31	3.76	3.6	96.4	0.0	1.29	1.10	0.81	0.82	2.80	8626	1105	6	0	1	0	0	logfile
✔	8J23	35943	2024-12-28	2023-04-14	3.2	2.25	3.17	2.1	0.002	0.57	2.0	0.06	17.34	0.01	2.116	7.78	0.43	3.3	96.5	0.2	0.73	0.74	0.74	1.18	2.1	0.004	0.63	0.0	0.04	17.31	0.01	2.583	8.45	4.53	3.8	96.2	0.0	0.59	1.65	0.75	0.76	1.96	8596	1101	5	0	0	0	0	logfile
✔	8SiB	40505	2024-12-27	2023-04-14	2.62	3.44	2.68	3.3	0.007	1.30	0.0	0.06	11.70	0.01	2.265	4.20	0.78	12.9	85.8	1.3	-5.28	0.73	0.84	3.54	3.3	0.003	0.90	0.0	0.05	15.76	0.00	2.459	9.52	2.33	13.1	86.2	0.7	-1.44	2.03	0.71	0.83	2.66	3544	454	1	0	0	0	0	logfile
✔	8J2F	35948	2024-12-27	2023-04-14	3.07	3.19	2.97	3.2	0.005	1.21	2.0	0.09	10.87	0.00	2.473	2.70	0.63	1.6	98.4	0.0	3.43	0.66	0.86	4.25	3.2	0.004	0.59	0.0	0.04	14.91	0.00	2.462	3.84	2.19	1.6	98.4	0.0	2.50	1.84	0.68	0.90	3.98	6164	768	4	0	6	0	0	logfile

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