Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J23	35943	2024-12-28	2023-04-14	3.2	2.25	3.17	2.1	0.002	0.57	2.0	0.06	17.34	0.01	2.116	7.78	0.43	3.3	96.5	0.2	0.73	0.74	0.74	1.18	2.1	0.004	0.63	0.0	0.04	17.31	0.01	2.583	8.45	4.53	3.8	96.2	0.0	0.59	1.65	0.75	0.76	1.96	8596	1101	5	0	0	0	0	logfile
✔	8SHS	40493	2024-12-31	2023-04-14	2.66	3.50	2.78	3.3	0.002	0.42	0.0	0.04	8.94	0.00	2.309	5.02	0.50	1.2	98.8	0.0	1.56	0.85	0.81	3.60	3.3	0.003	0.49	0.0	0.04	13.66	0.00	2.491	3.09	0.32	1.9	98.1	0.0	1.61	0.46	0.78	0.84	3.63	15156	1976	4	0	0	0	0	logfile
✔	8J2F	35948	2024-12-27	2023-04-14	3.07	3.19	2.97	3.2	0.005	1.21	2.0	0.09	10.87	0.00	2.473	2.70	0.63	1.6	98.4	0.0	3.43	0.66	0.86	4.25	3.2	0.004	0.59	0.0	0.04	14.91	0.00	2.462	3.84	2.19	1.6	98.4	0.0	2.50	1.84	0.68	0.90	3.98	6164	768	4	0	6	0	0	logfile
✔	8SiB	40505	2024-12-27	2023-04-14	2.62	3.44	2.68	3.3	0.007	1.30	0.0	0.06	11.70	0.01	2.265	4.20	0.78	12.9	85.8	1.3	-5.28	0.73	0.84	3.54	3.3	0.003	0.90	0.0	0.05	15.76	0.00	2.459	9.52	2.33	13.1	86.2	0.7	-1.44	2.03	0.71	0.83	2.66	3544	454	1	0	0	0	0	logfile
✔	8oRM	17129	2024-12-27	2023-04-14	1.9	1.83	1.88	1.9	0.004	0.58	0.0	0.04	16.75	0.00	2.236	3.99	0.90	1.6	98.2	0.2	1.88	0.70	0.81	5.96	1.9	0.003	0.61	0.0	0.04	16.69	0.01	2.606	4.68	1.62	1.1	98.7	0.2	1.66	0.21	0.70	0.82	5.77	5341	632	7	0	2	210	0	logfile
✔	8J20	35940	2024-12-28	2023-04-14	3.2	2.23	3.26	2.1	0.006	0.71	2.0	0.06	17.90	0.00	2.197	10.83	0.62	4.4	95.0	0.5	0.12	0.74	0.73	1.15	2.0	0.004	0.72	0.0	0.05	18.03	0.00	2.460	11.25	6.35	5.4	94.2	0.4	-0.53	1.15	0.75	0.76	1.58	8832	1125	6	0	2	0	0	logfile
✔	8SHN	40489	2024-12-31	2023-04-14	2.8	3.49	2.91	3.2	0.004	0.53	0.0	0.04	13.80	0.00	1.936	7.01	0.00	3.0	97.0	0.0	1.72	0.86	0.89	2.67	3.2	0.002	0.57	0.0	0.04	15.21	0.00	1.425	5.88	0.70	3.2	96.8	0.0	1.82	0.27	0.83	0.86	2.36	66003	8578	49	0	48	19	0	logfile
✔	8J21	35941	2024-12-28	2023-04-14	3.3	2.25	3.32	2.0	0.002	0.62	0.0	0.04	17.79	0.00	2.140	9.82	0.42	4.7	94.8	0.5	0.09	0.73	0.72	1.69	2.0	0.004	0.71	0.0	0.04	18.20	0.00	2.457	11.63	6.97	5.4	94.2	0.4	-0.54	1.14	0.75	0.76	2.27	8803	1125	6	0	1	0	0	logfile
✔	8J28	35947	2024-12-27	2023-04-14	3.7	4.43	3.42	4.2	0.006	0.92	0.0	0.04	17.63	0.00	2.213	16.94	2.28	6.3	93.7	0.0	-1.56	0.53	0.75	0.95	4.3	0.004	0.93	0.0	0.05	18.58	0.00	2.336	14.74	4.18	4.0	96.0	0.0	-0.35	2.56	0.51	0.76	1.45	2499	315	5	0	1	0	0	logfile
✔	8J1R	35931	2024-12-27	2023-04-13	3.52	3.54	3.52	3.4	0.004	0.57	0.0	0.04	12.84	0.00	2.200	14.16	6.09	4.7	95.2	0.1	0.26	0.79	0.74	1.50	3.3	0.003	0.66	0.0	0.04	14.99	0.00	2.494	10.99	3.04	3.6	96.4	0.0	0.29	1.16	0.79	0.73	0.55	6497	823	2	0	0	0	0	logfile
✔	8SHA	40482	2024-12-31	2023-04-13	3.0	3.49	3.11	3.3	0.006	0.60	0.0	0.04	14.84	0.00	1.897	7.05	0.00	4.1	95.9	0.0	1.34	0.84	0.89	2.68	3.3	0.004	0.67	1.0	0.04	15.97	0.00	0.882	6.36	0.99	3.7	96.3	0.0	1.37	1.08	0.83	0.89	2.49	67155	8717	50	0	48	19	0	logfile
✔	8SH9	40481	2024-12-31	2023-04-13	2.7	3.31	2.75	3.1	0.004	0.52	0.0	0.04	14.49	0.00	1.955	6.08	0.00	3.4	96.6	0.0	1.77	0.83	0.88	3.18	3.0	0.003	0.59	1.0	0.04	15.64	0.00	0.986	5.47	0.51	3.2	96.8	0.0	1.74	0.26	0.82	0.87	2.98	67197	8725	50	0	48	19	0	logfile
✔	8SHD	40484	2024-12-31	2023-04-13	2.9	3.43	2.96	3.2	0.004	0.54	0.0	0.04	13.80	0.00	1.928	6.69	0.00	3.3	96.7	0.0	1.61	0.84	0.88	3.07	3.2	0.004	0.59	0.0	0.04	15.43	0.00	0.929	6.08	1.01	3.3	96.7	0.0	1.64	0.29	0.84	0.90	2.77	66069	8588	49	0	48	19	0	logfile
✔	8SH3	40479	2024-12-29	2023-04-13	2.8	3.07	2.82	3.1	0.004	0.65	0.0	0.17	21.60	0.01	2.186	10.80	0.00	4.8	95.2	0.0	1.02	0.59	0.79	4.25	3.1	0.003	0.60	0.0	0.04	15.62	0.00	2.387	9.32	2.01	4.8	95.0	0.2	1.09	0.38	0.61	0.82	3.88	10386	1226	4	0	38	0	0	logfile
✔	8SGR	40465	2024-12-30	2023-04-13	2.84	3.51	2.98	3.3	0.006	0.61	0.0	0.04	11.94	0.00	2.143	5.61	0.64	2.0	98.0	0.0	2.16	0.80	0.78	4.42	3.4	0.004	0.51	0.0	0.04	13.91	0.00	2.565	4.63	0.24	2.6	97.4	0.0	2.52	0.93	0.78	0.88	3.85	12252	1572	8	0	4	0	0	logfile
✔	8SGT	40467	2024-12-28	2023-04-13	3.6	3.99	3.64	3.7	0.005	0.75	0.0	0.05	13.35	0.01	2.090	4.53	0.00	2.2	97.8	0.0	-1.14	0.57	0.67	1.72	3.7	0.008	0.74	0.0	0.05	15.65	0.01	2.128	11.83	2.22	4.0	96.0	0.0	0.38	1.49	0.59	0.76	1.68	7119	918	4	0	6	0	0	logfile
✔	8oRD	17120	2024-12-31	2023-04-13	3.9	4.04	3.89	4.1	0.005	0.92	0.0	0.05	17.82	0.01	2.109	19.32	0.58	2.3	97.7	0.0	-0.41	0.55	0.81	1.69	4.0	0.004	0.82	0.0	0.05	18.01	0.01	2.463	14.86	4.50	2.5	97.5	0.0	0.14	1.56	0.56	0.82	1.50	14590	1850	10	0	10	0	0	logfile
✔	8J1J	35926	2024-12-29	2023-04-13	2.91	2.61	2.94	2.8	0.004	0.53	0.0	0.04	18.68	0.00	2.228	6.59	1.43	2.9	96.9	0.3	-1.23	0.84	0.85	3.09	2.8	0.004	0.60	0.0	0.04	20.21	0.00	2.502	7.37	1.71	3.6	96.1	0.3	0.75	0.55	0.84	0.85	2.92	9793	811	8	151	4	0	0	logfile
✔	8oR4	17117	2024-12-31	2023-04-13	3.8	2.76	3.68	2.2	0.003	0.59	1.0	0.04	16.20	0.00	1.930	10.19	0.31	6.0	94.0	0.0	0.05	0.70	0.66	0.53	2.2	0.003	0.76	0.0	0.04	17.31	0.00	2.153	9.58	4.74	6.1	93.9	0.0	-0.23	1.63	0.72	0.69	0.74	15036	1988	7	0	0	0	0	logfile
✔	8J1N	35928	2024-12-27	2023-04-13	2.51	2.65	2.47	2.7	0.009	1.01	0.0	0.05	15.98	0.00	2.219	8.99	0.00	2.9	97.1	0.0	1.72	0.60	0.79	3.77	2.7	0.003	0.59	0.0	0.04	17.31	0.00	2.489	6.71	2.37	2.2	97.8	0.0	3.15	0.49	0.64	0.88	3.42	3292	414	3	0	4	0	0	logfile

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