Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SFJ	40443	2024-12-29	2023-04-11	3.6	4.77	3.67	4.0	0.005	1.19	0.0	0.07	22.09	0.01	2.182	7.41	0.22	2.3	97.7	0.0	-0.53	0.87	0.72	1.68	4.0	0.003	0.66	0.0	0.04	22.33	0.00	2.493	9.98	2.02	2.6	97.4	0.0	0.92	0.98	0.92	0.86	1.80	10207	1001	4	97	0	0	0	logfile
✔	8SFR	40449	2024-12-30	2023-04-11	3.5	4.95	3.63	4.0	0.006	1.03	0.0	0.06	20.28	0.00	2.210	8.73	0.18	3.2	96.8	0.0	-0.36	0.91	0.88	1.56	4.0	0.003	0.65	0.0	0.04	20.16	0.00	2.508	9.42	2.44	3.1	96.9	0.0	1.30	0.34	0.91	0.87	1.51	12045	1240	4	92	0	0	0	logfile
✔	8oQ8	17108	2024-12-31	2023-04-11	2.9	2.64	2.80	2.8	0.014	0.97	0.0	0.08	11.03	0.01	2.175	2.36	0.84	2.3	97.7	0.0	1.82	0.64	0.87	4.88	2.8	0.004	0.86	1.0	0.05	15.22	0.00	2.013	2.33	2.65	2.5	97.5	0.0	1.62	0.81	0.64	0.88	4.23	14432	1680	15	0	46	132	0	logfile
✔	8oQA	17110	2024-12-30	2023-04-11	2.9	2.48	2.90	2.9	0.003	0.59	0.0	0.06	10.52	0.00	2.070	3.88	0.61	0.9	99.1	0.0	2.11	0.68	0.85	4.55	2.8	0.004	0.88	1.0	0.05	15.97	0.00	2.052	3.47	3.03	1.2	98.8	0.0	1.28	1.72	0.67	0.86	4.33	13762	1650	10	0	36	0	0	logfile
✔	8SG4	40451	2024-12-30	2023-04-11	3.11	3.67	3.27	3.6	0.004	0.66	0.0	0.04	12.03	0.01	2.302	0.80	0.00	1.9	98.1	0.0	0.44	0.61	0.78	2.80	3.6	0.003	0.53	0.0	0.04	14.17	0.00	2.395	4.18	0.70	2.3	97.7	0.0	2.05	1.59	0.64	0.81	2.22	11715	1469	1	0	0	0	0	logfile
✔	8SG8	40452	2024-12-31	2023-04-11	3.0	3.47	3.09	3.3	0.004	0.54	0.0	0.04	14.66	0.00	1.943	7.29	0.00	3.5	96.5	0.0	1.72	0.82	0.88	2.61	3.3	0.005	0.62	0.0	0.04	15.78	0.00	0.952	6.65	0.66	3.7	96.3	0.0	1.61	0.27	0.82	0.89	2.48	66839	8678	50	0	48	19	0	logfile
✔	8SFL	40444	2024-12-30	2023-04-11	3.3	4.44	3.39	3.8	0.005	1.00	0.0	0.06	21.89	0.01	2.236	5.08	0.69	3.4	96.6	0.0	-0.87	0.88	0.77	2.17	3.8	0.004	0.65	0.0	0.04	21.85	0.00	2.516	9.87	3.79	3.7	96.3	0.0	1.61	0.97	0.91	0.89	2.33	12971	1296	4	114	0	0	0	logfile
✔	8SFP	40447	2024-12-30	2023-04-11	3.8	5.18	3.86	4.2	0.005	1.19	0.0	0.06	20.76	0.01	2.256	7.46	0.54	2.8	97.2	0.0	-0.93	0.89	0.78	1.19	4.2	0.003	0.72	0.0	0.04	20.72	0.00	2.474	11.91	2.98	2.3	97.7	0.0	1.15	0.56	0.90	0.87	1.00	12062	1240	4	93	0	0	0	logfile
✔	8SFQ	40448	2024-12-30	2023-04-11	3.5	4.90	3.55	4.0	0.005	1.11	0.0	0.07	20.08	0.01	2.220	6.61	0.72	2.0	98.0	0.0	0.23	0.89	0.80	1.78	4.0	0.004	0.64	0.0	0.04	19.99	0.00	2.436	10.84	1.99	1.6	98.4	0.0	2.10	0.48	0.91	0.87	1.82	12045	1240	4	92	0	0	0	logfile
✔	8SFo	40446	2024-12-30	2023-04-11	3.3	4.59	3.46	3.8	0.004	0.86	0.0	0.06	20.07	0.01	2.057	3.67	0.18	2.5	97.5	0.0	-0.41	0.88	0.80	2.87	3.8	0.003	0.58	0.0	0.04	20.15	0.00	1.224	7.33	0.99	2.8	97.2	0.0	2.38	1.05	0.93	0.87	2.67	12606	1240	5	119	2	0	0	logfile
✔	8J0F	35901	2024-12-28	2023-04-10	3.3	4.15	3.22	3.8	0.009	1.06	0.0	0.05	18.09	0.01	2.242	17.62	2.13	1.8	98.2	0.0	0.30	0.81	0.82	1.63	3.8	0.004	0.74	0.0	0.04	17.65	0.00	2.021	8.59	1.49	1.5	98.5	0.0	1.63	1.26	0.81	0.85	1.59	8932	1144	12	0	8	0	0	logfile
✔	8SFE	40439	2024-12-30	2023-04-10	3.36	3.93	3.53	3.6	0.003	0.65	0.0	0.04	14.92	0.00	2.072	15.02	0.00	6.6	93.4	0.1	-0.39	0.80	0.80	0.82	3.6	0.003	0.69	0.0	0.04	16.29	0.00	2.163	11.50	1.51	5.7	94.2	0.1	-0.24	0.39	0.80	0.81	0.53	60512	7881	32	0	16	0	0	logfile
✔	8SEL	40421	2024-12-27	2023-04-10	3.8	4.20	3.61	4.2	0.026	2.25	0.0	0.13	12.89	0.01	2.474	1.85	0.00	4.3	92.8	2.9	-1.59	0.59	0.73	3.09	4.2	0.005	1.02	0.0	0.06	18.59	0.00	2.495	25.02	7.50	16.2	83.8	0.0	-3.60	2.58	0.57	0.72	1.53	5500	730	20	0	0	0	0	logfile
✘	8SEK	40419	2024-12-27	2023-04-10	3.5	3.55	3.07	3.8	0.032	2.39	0.0	0.14	10.43	0.01	2.397	1.27	0.00	20.0	80.0	0.0	-3.19	0.49	0.76	4.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2380	320	10	0	0	0	0	logfile
✔	8SEH	40411	2024-12-27	2023-04-10	2.9	2.68	2.71	3.1	0.026	2.09	10.0	0.12	10.93	0.01	2.507	0.00	0.00	7.0	93.0	0.0	-2.29	0.52	0.80	4.20	3.0	0.005	0.75	0.0	0.05	17.15	0.00	2.585	7.39	4.38	6.8	93.2	0.0	-3.20	1.33	0.44	0.82	3.03	5570	730	10	0	0	0	0	logfile
✔	8iZZ	35878	2024-12-27	2023-04-09	3.75	3.60	3.46	3.7	0.017	3.95	17.0	0.34	16.30	0.00	1.847	34.96	0.00	15.2	84.8	0.0	-5.84	0.28	0.51	1.98	3.8	0.023	3.52	1.0	0.14	26.99	0.01	2.261	37.55	25.00	54.5	42.4	3.0	-6.96	3.53	0.30	0.53	-0.29	1342	198	22	0	0	0	0	logfile
✔	8SEB	40409	2024-12-29	2023-04-08	3.24	3.49	3.29	3.4	0.005	0.58	0.0	0.04	12.08	0.00	2.213	7.32	1.74	4.4	95.5	0.1	0.67	0.65	0.72	1.85	3.4	0.003	0.64	0.0	0.04	14.66	0.00	1.044	7.95	2.22	3.9	95.9	0.2	0.43	0.57	0.72	0.81	2.03	9609	1223	4	0	1	0	0	logfile
✔	8SEA	40408	2024-12-29	2023-04-08	3.4	3.67	3.45	3.7	0.005	0.57	0.0	0.04	11.77	0.00	1.270	8.65	3.00	4.0	96.0	0.0	0.54	0.71	0.76	1.96	3.6	0.005	0.66	0.0	0.04	14.52	0.00	2.522	9.68	3.54	5.3	94.7	0.0	0.23	0.41	0.76	0.85	1.69	10208	1299	5	0	1	0	0	logfile
✔	8oPS	17086	2024-12-28	2023-04-08	3.82	3.04	3.82	2.8	0.003	0.57	0.0	0.04	21.45	0.01	1.982	6.28	0.78	0.7	99.3	0.0	1.99	0.64	0.50	0.99	1.9	0.004	0.62	0.0	0.04	21.90	0.01	2.384	14.18	1.30	3.4	96.6	0.0	0.36	0.93	0.69	0.60	0.77	9241	445	4	69	1	0	4258	logfile
✔	8oPT	17087	2024-12-31	2023-04-08	3.65	2.57	3.54	3.6	0.002	0.48	0.0	0.04	19.51	0.00	1.982	7.07	0.14	2.4	97.6	0.0	1.92	0.69	0.60	0.79	3.6	0.003	0.58	0.0	0.04	19.70	0.00	2.168	9.20	1.63	3.6	96.4	0.0	0.50	0.39	0.71	0.62	0.79	14971	825	5	54	2	0	7197	logfile

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