Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oP2	17038	2024-12-29	2023-04-06	2.8	2.98	2.90	3.0	0.017	1.06	0.0	0.05	16.53	0.00	2.165	8.68	5.19	3.0	97.0	0.0	0.82	0.75	0.83	2.44	3.0	0.012	0.69	0.0	0.04	17.71	0.00	2.426	5.47	2.05	2.6	97.4	0.0	1.81	1.24	0.75	0.84	2.38	60280	7380	22	140	0	0	0	logfile
✔	8iZ8	35835	2024-12-29	2023-04-06	3.13	3.49	3.24	3.4	0.002	0.50	0.0	0.04	14.07	0.00	2.264	6.14	0.00	1.9	98.1	0.0	-0.97	0.55	0.71	0.44	3.4	0.003	0.59	0.0	0.04	16.36	0.00	2.567	7.55	1.77	2.8	97.2	0.0	1.49	1.23	0.60	0.82	1.41	9805	1230	1	0	0	0	0	logfile
✔	8SD0	40348	2024-12-27	2023-04-06	3.8	3.94	3.78	3.9	0.004	0.86	0.0	0.05	18.36	0.01	2.276	9.69	0.52	6.8	93.2	0.0	-1.62	0.73	0.79	1.64	3.9	0.003	0.68	0.0	0.04	18.72	0.00	1.470	11.63	3.65	7.0	93.0	0.0	-0.25	0.47	0.73	0.79	1.90	5829	636	3	31	2	0	0	logfile
✔	8iYQ	35827	2024-12-30	2023-04-05	2.46	2.22	2.69	2.0	0.003	0.52	0.0	0.04	18.29	0.00	2.305	4.17	0.54	4.4	95.6	0.0	0.39	0.70	0.73	3.86	2.0	0.005	0.58	0.0	0.04	19.19	0.00	2.449	4.70	1.54	4.6	95.3	0.1	0.03	0.41	0.83	0.83	3.70	13081	1198	4	147	0	0	0	logfile
✔	8SCX	40346	2024-12-27	2023-04-05	2.7	3.26	2.76	3.1	0.006	0.70	0.0	0.04	14.97	0.00	2.240	5.56	0.18	1.9	98.1	0.0	1.27	0.69	0.85	4.05	3.1	0.003	0.57	0.0	0.04	16.53	0.00	2.398	5.30	1.97	2.1	97.9	0.0	2.51	0.42	0.64	0.83	3.12	5753	760	7	0	2	0	0	logfile
✔	8ooT	17028	2024-12-27	2023-04-05	2.85	3.10	2.87	2.8	0.003	0.64	0.0	0.05	13.62	0.01	1.743	2.03	0.00	3.5	96.5	0.0	-0.61	0.89	0.87	5.43	2.8	0.004	0.67	0.0	0.04	15.22	0.00	1.953	4.97	1.93	2.4	97.6	0.0	0.81	0.76	0.89	0.88	4.40	4479	556	3	0	2	0	0	logfile
✔	8ooF	17012	2024-12-27	2023-04-05	2.9	1.91	3.05	2.8	0.004	0.71	0.0	0.05	13.65	0.01	2.043	2.60	0.00	2.9	97.1	0.0	-0.80	0.84	0.83	4.92	2.8	0.003	0.64	0.0	0.04	16.34	0.00	1.995	5.08	2.36	3.1	96.9	0.0	0.59	1.96	0.85	0.84	4.32	4479	556	3	0	2	0	0	logfile
✔	8ooS	17027	2024-12-30	2023-04-05	3.29	1.76	3.20	3.1	0.007	1.29	0.0	0.05	24.79	0.01	1.879	4.57	0.00	3.2	96.8	0.0	-2.38	0.71	0.73	2.66	3.1	0.004	0.79	0.0	0.04	25.72	0.00	1.061	8.30	1.79	3.1	96.9	0.0	0.87	1.59	0.74	0.74	1.64	12307	966	10	217	3	0	0	logfile
✔	8iY9	35817	2024-12-28	2023-04-04	3.37	3.65	3.39	3.7	0.005	0.90	1.0	0.05	12.94	0.01	2.123	3.88	1.07	3.1	96.9	0.0	-0.48	0.70	0.79	3.58	3.7	0.003	0.60	0.0	0.04	14.29	0.00	2.536	4.40	2.93	2.3	97.7	0.0	0.51	0.44	0.70	0.82	3.01	8121	1130	6	0	1	0	0	logfile
✔	8SC6	40339	2024-12-27	2023-04-04	3.13	3.36	3.12	3.4	0.003	0.50	0.0	0.03	8.71	0.00	2.273	3.28	0.81	0.9	99.1	0.0	2.80	0.58	0.82	2.08	3.4	0.002	0.48	0.0	0.04	12.50	0.00	2.625	3.28	2.43	0.9	99.1	0.0	3.08	0.47	0.53	0.80	2.18	3479	447	2	0	1	0	0	logfile
✔	8SC3	40336	2024-12-27	2023-04-04	3.24	3.44	3.19	3.4	0.005	0.64	0.0	0.04	11.84	0.01	2.206	2.15	0.00	1.6	98.4	0.0	-0.54	0.59	0.78	2.69	3.4	0.004	0.69	0.0	0.04	15.60	0.00	2.449	10.05	3.25	1.8	98.2	0.0	2.60	2.23	0.58	0.80	2.64	3463	445	2	0	1	0	0	logfile
✔	8iY6	35815	2024-12-27	2023-04-04	3.13	3.04	3.19	3.1	0.003	0.55	0.0	0.04	12.05	0.00	2.168	6.91	0.00	2.3	97.7	0.0	1.84	0.42	0.61	2.08	3.1	0.003	0.65	0.0	0.04	14.66	0.00	2.530	9.47	1.77	1.3	98.7	0.0	2.40	0.53	0.42	0.63	1.34	2495	314	2	0	0	0	0	logfile
✔	8ooA	17008	2024-12-28	2023-04-04	3.18	1.83	3.09	2.8	0.008	1.08	0.0	0.06	27.96	0.01	2.299	5.05	0.00	1.5	98.5	0.0	-2.10	0.75	0.76	3.22	2.8	0.004	0.60	0.0	0.04	28.26	0.00	2.558	8.11	2.03	1.2	98.8	0.0	2.01	1.03	0.77	0.76	2.63	8405	529	8	204	0	0	0	logfile
✔	8SC1	40334	2024-12-27	2023-04-04	2.92	3.14	2.89	3.2	0.003	0.68	0.0	0.04	10.47	0.01	2.266	1.15	0.00	2.5	97.5	0.0	-0.78	0.58	0.81	2.42	3.2	0.002	0.56	0.0	0.03	13.85	0.00	2.555	2.45	2.16	1.1	98.9	0.0	2.62	1.98	0.60	0.82	1.11	3447	446	1	0	0	0	0	logfile
✔	8iYD	35818	2024-12-27	2023-04-04	3.1	3.64	3.35	3.5	0.004	0.81	1.0	0.05	17.22	0.01	2.090	19.17	0.98	9.5	89.8	0.8	-2.30	0.73	0.77	2.04	3.5	0.004	0.75	1.0	0.05	17.32	0.01	2.285	11.50	6.61	7.0	92.6	0.4	-1.76	0.32	0.73	0.78	1.86	49344	6639	30	0	0	0	0	logfile
✔	8SC2	40335	2024-12-27	2023-04-04	3.36	3.56	3.32	3.5	0.003	0.55	0.0	0.04	8.52	0.00	2.258	3.93	0.00	1.3	98.7	0.0	2.79	0.58	0.81	1.97	3.5	0.003	0.66	0.0	0.04	13.56	0.00	2.537	6.74	2.12	2.0	98.0	0.0	2.70	1.03	0.58	0.82	1.19	3534	453	2	0	1	0	0	logfile
✔	8SC4	40337	2024-12-27	2023-04-04	3.46	3.65	3.43	3.6	0.004	0.68	0.0	0.04	10.98	0.03	2.296	2.80	0.00	2.9	97.1	0.0	-0.96	0.57	0.77	2.57	3.6	0.003	0.77	0.0	0.04	15.26	0.00	2.536	10.08	3.42	2.2	97.8	0.0	2.66	1.20	0.57	0.79	2.93	3544	456	2	0	1	0	0	logfile
✔	8iY5	35814	2024-12-29	2023-04-04	2.8	2.81	2.81	3.0	0.003	0.68	0.0	0.04	13.17	0.00	2.166	11.68	0.00	3.9	95.9	0.3	-0.34	0.47	0.57	1.96	3.0	0.003	0.74	0.0	0.05	15.64	0.00	2.209	9.76	1.89	4.1	95.6	0.3	0.06	0.49	0.46	0.65	1.91	9176	1177	6	0	0	0	0	logfile
✔	8oo9	17007	2024-12-27	2023-04-04	3.2	2.32	3.17	3.1	0.010	1.70	0.0	0.06	20.61	0.01	1.879	4.84	0.00	2.3	97.7	0.0	-2.21	0.81	0.78	3.72	3.1	0.004	1.04	0.0	0.04	22.24	0.00	1.232	6.46	1.76	2.6	97.4	0.0	-0.67	1.37	0.83	0.81	2.20	4516	439	4	42	3	0	0	logfile
✔	8iYH	35822	2024-12-28	2023-04-04	3.3	3.51	3.29	3.5	0.004	0.72	0.0	0.05	13.48	0.01	2.204	5.25	1.08	2.3	97.7	0.0	0.53	0.69	0.80	3.40	3.5	0.004	0.59	0.0	0.04	14.78	0.00	2.518	4.20	4.33	2.3	97.7	0.0	0.57	0.39	0.69	0.82	3.38	8035	1119	6	0	1	0	0	logfile

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